Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Reverse (-)

16381953 .. 16383834

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23456

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGAAGCAGGACAGGAAAACCTTTTCGTACAACAAACCTGATTGTTTTTGCACCTAAAAATGTTCCAAATGATTCTGGAAAGAATGGTTTTATCGCGTGTGGAGATGCGTTGATAGTGGATCCTGGGTGTCAGTCTAAATTCCATGAAGAGCTCAGACAAATTGTAGCTGCTTTGCCGAGAAAGTTAATTGTGTTTGTTACTCATCATCATCGCGATCATGTGGATGATGACTGGTCTCTGGGCTTTACTGCTATTTCTGGAACTGAAGAGATTTGCATTGGCGAAGCTCACTTGTGTTTCAGTCAAGGTAGTGCCATACTGGATGTTACTTCCGGGGGAAATATGACTGATTACTTTCAATCAACATACAAATTTATGGAGATTTCCCCACATGCTTTGATCCCCATGCATGGGAGAGTTAACCTCTGGCCAAAGCACATGCTTTGTGGATATCTCAGGAACCGTAGAGGTAGAGAAAGTTCCATCTTGAAAGCGATAGAAAATGGAGCTGAAACATTATTTGATATAGTTGCAAATGTATATTCTAAGGTTGACCGTAGCTTTTGGATTCCTGCTACATCAAATGTGAGGCTTCACGTGGATCATCTAAGCCAGCAAGATAAGTTGCCAAAGGTAAAGGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

216

Amino Acids

24.12

Weight (kDa)

8.28

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_BLACT	PF17778	173 - 209	4e-06	Beta-lactamase associated winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	98, 216
AclWI	GGATC	4 cut(s)	116, 129, 397, 612
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	2 cut(s)	140, 374
AcuI	CTGAAG	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	601
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	413, 414
AgsI	TTSAA	2 cut(s)	362, 493
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	5 cut(s)	154, 170, 290, 512, 564
AluI	AGCT	5 cut(s)	154, 170, 290, 512, 564
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	4 cut(s)	116, 129, 397, 612
AoxI	GGCC	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	140, 374
AsuC2I	CCSGG	1 cut(s)	337
BalI	TGGCCA	1 cut(s)	433
BamHI	GGATCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	156
BbrPI	CACGTG	1 cut(s)	601
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	243
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	126, 337
BmiI	GGNNCC	2 cut(s)	123, 464
BmrFI	CCNGG	2 cut(s)	126, 337
BmsI	GCATC	1 cut(s)	97
BplI	GAGNNNNNCTC	2 cut(s)	411, 443
BpuMI	CCSGG	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	601
BsaI	GGTCTC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	125, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 414
Bse1I	ACTGG	2 cut(s)	239, 327
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	125, 336
BseGI	GGATG	2 cut(s)	232, 331
BseLI	CCNNNNNNNGG	2 cut(s)	413, 414
BseMII	CTCAG	2 cut(s)	169, 472
BseNI	ACTGG	2 cut(s)	239, 327
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	2 cut(s)	98, 216
BshFI	GGCC	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	336
BslI	CCNNNNNNNGG	2 cut(s)	413, 414
BsmAI	GTCTC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	433
Bso31I	GGTCTC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	4 cut(s)	121, 217, 402, 604
Bsp68I	TCGCGA	1 cut(s)	216
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	2 cut(s)	168, 471
BspFNI	CGCG	2 cut(s)	98, 216
BspHI	TCATGA	1 cut(s)	647
BspLI	GGNNCC	2 cut(s)	123, 464
BspPI	GGATC	4 cut(s)	116, 129, 397, 612
BspQI	GCTCTTC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	239, 327
BssECI	CCNNGG	2 cut(s)	125, 336
BssMI	GATC	4 cut(s)	121, 217, 402, 604
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	467, 560
Bst6I	CTCTTC	2 cut(s)	144, 264
BstBAI	YACGTR	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	4 cut(s)	155, 458, 549, 611
BstF5I	GGATG	2 cut(s)	232, 331
BstFNI	CGCG	2 cut(s)	98, 216
BstKTI	GATC	4 cut(s)	124, 220, 405, 607
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	4 cut(s)	121, 217, 402, 604
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	2 cut(s)	398, 445
BstSCI	CCNGG	2 cut(s)	124, 335
BstUI	CGCG	2 cut(s)	98, 216
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	433
BtgZI	GCGATG	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	232, 331
BtuMI	TCGCGA	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	617
CciI	TCATGA	1 cut(s)	647
Csp6I	GTAC	1 cut(s)	30
CspCI	CAANNNNNGTGG	2 cut(s)	381, 416
CviAII	CATG	7 cut(s)	146, 221, 395, 409, 413, 442, 648
CviJI	RGCY	9 cut(s)	154, 170, 246, 290, 433, 512, 564, 595, 615
CviKI_1	RGCY	9 cut(s)	154, 170, 246, 290, 433, 512, 564, 595, 615
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	4 cut(s)	155, 458, 549, 611
DpnI	GATC	4 cut(s)	123, 219, 404, 606
DpnII	GATC	4 cut(s)	121, 217, 402, 604
EaeI	YGGCCR	1 cut(s)	431
Eam1104I	CTCTTC	2 cut(s)	144, 264
EarI	CTCTTC	2 cut(s)	144, 264
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	455
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	288
Eco72I	CACGTG	1 cut(s)	601
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	455
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	7 cut(s)	149, 224, 398, 412, 416, 445, 651
FatI	CATG	7 cut(s)	145, 220, 394, 408, 412, 441, 647
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	2 cut(s)	239, 338
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	433
HapII	CCGG	1 cut(s)	336
Hin1II	CATG	7 cut(s)	149, 224, 398, 412, 416, 445, 651
HincII	GTYRAC	2 cut(s)	424, 556
HindII	GTYRAC	2 cut(s)	424, 556
HinfI	GANTC	2 cut(s)	74, 571
HpaI	GTTAAC	1 cut(s)	424
HpaII	CCGG	1 cut(s)	336
Hpy166II	GTNNAC	2 cut(s)	424, 556
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	6 cut(s)	78, 215, 261, 460, 490, 648
Hpy8I	GTNNAC	2 cut(s)	424, 556
HpyCH4III	ACNGT	2 cut(s)	467, 560
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	4 cut(s)	53, 279, 412, 536
HpyF3I	CTNAG	4 cut(s)	155, 458, 549, 611
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	7 cut(s)	149, 224, 398, 412, 416, 445, 651
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	121, 217, 402, 604
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	2 cut(s)	199, 328
MalI	GATC	4 cut(s)	123, 219, 404, 606
MboI	GATC	4 cut(s)	121, 217, 402, 604
MboII	GAAGA	2 cut(s)	161, 281
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	433
MluCI	AATT	4 cut(s)	140, 162, 189, 374
MluNI	TGGCCA	1 cut(s)	433
MnlI	CCTC	3 cut(s)	437, 464, 585
Mox20I	TGGCCA	1 cut(s)	433
Mph1103I	ATGCAT	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	433
MseI	TTAA	2 cut(s)	188, 423
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	433
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	2 cut(s)	126, 337
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	2 cut(s)	98, 216
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	4 cut(s)	121, 217, 402, 604
NlaIII	CATG	7 cut(s)	149, 224, 398, 412, 416, 445, 651
NlaIV	GGNNCC	2 cut(s)	123, 464
NmeAIII	GCCGAG	1 cut(s)	204
NruI	TCGCGA	1 cut(s)	216
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	2 cut(s)	398, 445
PagI	TCATGA	1 cut(s)	647
PciSI	GCTCTTC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	74, 571
PkrI	GCNGC	1 cut(s)	172
PmaCI	CACGTG	1 cut(s)	601
PmlI	CACGTG	1 cut(s)	601
Ppu21I	YACGTR	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	124
PspCI	CACGTG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	123, 464
PsrI	GAACNNNNNNTAC	2 cut(s)	466, 498
PsuI	RGATCY	1 cut(s)	121
RruI	TCGCGA	1 cut(s)	216
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	225
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	188, 423
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	4 cut(s)	121, 217, 402, 604
ScrFI	CCNGG	2 cut(s)	126, 337
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	4 cut(s)	140, 162, 189, 374
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	124, 335
TaaI	ACNGT	2 cut(s)	467, 560
TaiI	ACGT	1 cut(s)	603
TasI	AATT	4 cut(s)	140, 162, 189, 374
TfiI	GAWTC	2 cut(s)	74, 571
Tru1I	TTAA	2 cut(s)	188, 423
Tru9I	TTAA	2 cut(s)	188, 423
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	162, 636
XapI	RAATTY	2 cut(s)	140, 374
XceI	RCATGY	2 cut(s)	398, 445
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.