Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Reverse (-)

1023083 .. 1026705

Gene Structure 3623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG012800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCAGCCGCAGCTCGGGCTTTCACTCTCTCTCGCCTCACCGACCTGTCACTCAAGCCCCTCCACCCACAACCACCACCGCTCTCTCGGTCTGCAACGAAGCACGCCATGTCTTCAGAGAGCTCTCCTCCTCTTATTGCAGCTCAGCTCAATCACCTCCCTCTGCTCGCTAAGGAGTACCCTCCTGGTGTTGTGCTTGTACCTATGGGAAGCAGGACAGGAAAACCTTTTCGTACAACAAACCTGATTGTTTTTGCACCTAAAAATGTTCCAAATGATTCTGGAAAGAATGGTTTTATCGCGTGTGGAGATGCGTTGATAGTGGATCCTGGGTGTCAGTCTAAATTCCATGAAGAGCTCAGACAAATTGTAGCTGCTTTGCTGAGAAAGTTAATTGTGTTTGTTACTCATCATCATCGCGATCATGTGGATGGTCTTTCAGTTATTCAACGTTGCAATCCTGAGGCTACATTATTAGCACATGAAAACACCATGCGACGCATTGGGAAAGATGACTGGTCTCTTGGCTTTACTGCTATTTCTGGAACTGAAGAGATTTGCATTGGCGGTCAGCGGTTGATTGCCATTTTCTCTCCGGGACATACAGATGGCCATATGGGACTGCTTCATGCCAGTACTCACTTATTGATTGTAGGTGATCATTGTGTGGGTCAAGGTAGTGCCATACTGGATGTTACTTCAGGAGGAAATATGACTGATTACTTTCAATCAACATACAAATTTATGGAGATTTCCCCACATGCTTTGATCCCCATGCATGGGAGAGTTAACCTCTGGCCAAAGCACATGCTTTGTGGATATCTCAGGAACCGTAGAGGTAGAGAAAGTTCCATCTTGAAAGCGATAGAAAATGGACCTGAAACATTATTTGATATAGTTGCAAATGTATATTCTGAGGTTGACCGTAGCTTTTGGATTCCTGCTGCATCAAATGTGAGGCTTCACGTGGATCATCTAAGCCAGCAAGATAAGTTGCCAAAGGTAAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

337

Amino Acids

36.97

Weight (kDa)

8.88

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	102 - 232	5.2e-08	Metallo-beta-lactamase superfamily
WHD_BLACT	PF17778	295 - 331	2.3e-06	Beta-lactamase associated winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	82
AccII	CGCG	2 cut(s)	302, 420
AciI	CCGC	4 cut(s)	9, 80, 567, 574
AclI	AACGTT	1 cut(s)	451
AclWI	GGATC	4 cut(s)	320, 333, 763, 978
AcoI	YGGCCR	2 cut(s)	610, 797
AcsI	RAATTY	2 cut(s)	344, 740
AcuI	CTGAAG	3 cut(s)	99, 570, 684
AcvI	CACGTG	1 cut(s)	967
AfaI	GTAC	4 cut(s)	179, 201, 235, 637
AfiI	CCNNNNNNNGG	3 cut(s)	15, 779, 780
AgsI	TTSAA	3 cut(s)	449, 728, 859
AjnI	CCWGG	2 cut(s)	184, 328
AluBI	AGCT	7 cut(s)	14, 123, 143, 148, 358, 374, 930
AluI	AGCT	7 cut(s)	14, 123, 143, 148, 358, 374, 930
Alw21I	GWGCWC	2 cut(s)	125, 360
Alw26I	GTCTC	1 cut(s)	525
AlwI	GGATC	4 cut(s)	320, 333, 763, 978
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	2 cut(s)	610, 797
ApeKI	GCWGC	5 cut(s)	5, 11, 140, 374, 944
ApoI	RAATTY	2 cut(s)	344, 740
AspS9I	GGNCC	1 cut(s)	875
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	3 cut(s)	31, 146, 668
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	875
AxyI	CCTNAGG	1 cut(s)	462
BalI	TGGCCA	2 cut(s)	612, 799
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	2 cut(s)	125, 360
BbrPI	CACGTG	1 cut(s)	967
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	125, 360
BbvI	GCAGC	5 cut(s)	17, 23, 152, 361, 931
BccI	CCATC	3 cut(s)	425, 602, 860
BciT130I	CCWGG	2 cut(s)	186, 330
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	1 cut(s)	597
BcoDI	GTCTC	1 cut(s)	525
BisI	GCNGC	6 cut(s)	6, 9, 12, 141, 375, 945
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	6 cut(s)	7, 10, 13, 142, 376, 946
BmcAI	AGTACT	1 cut(s)	637
Bme1390I	CCNGG	3 cut(s)	186, 330, 597
Bme18I	GGWCC	1 cut(s)	875
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	875
BmiI	GGNNCC	2 cut(s)	327, 830
BmrFI	CCNGG	3 cut(s)	186, 330, 597
BmsI	GCATC	2 cut(s)	301, 956
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	4 cut(s)	112, 144, 777, 809
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	967
BsaI	GGTCTC	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 779, 780
Bse1I	ACTGG	3 cut(s)	521, 633, 693
Bse21I	CCTNAGG	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	186, 330
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	2 cut(s)	436, 697
BseLI	CCNNNNNNNGG	3 cut(s)	15, 779, 780
BseMII	CTCAG	6 cut(s)	158, 373, 374, 453, 838, 906
BseNI	ACTGG	3 cut(s)	521, 633, 693
BseRI	GAGGAG	2 cut(s)	117, 120
BseXI	GCAGC	5 cut(s)	17, 23, 152, 361, 931
Bsh1236I	CGCG	2 cut(s)	302, 420
BshFI	GGCC	2 cut(s)	612, 799
BsiHKAI	GWGCWC	2 cut(s)	125, 360
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	596
BslFI	GGGAC	2 cut(s)	612, 633
BslI	CCNNNNNNNGG	3 cut(s)	15, 779, 780
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	2 cut(s)	612, 633
BsnI	GGCC	2 cut(s)	612, 799
Bso31I	GGTCTC	1 cut(s)	525
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	125, 360
Bsp143I	GATC	5 cut(s)	325, 421, 658, 768, 970
Bsp1720I	GCTNAGC	1 cut(s)	144
Bsp68I	TCGCGA	1 cut(s)	420
BspACI	CCGC	4 cut(s)	9, 80, 567, 574
BspANI	GGCC	2 cut(s)	612, 799
BspCNI	CTCAG	6 cut(s)	157, 372, 375, 454, 837, 907
BspFNI	CGCG	2 cut(s)	302, 420
BspLI	GGNNCC	2 cut(s)	327, 830
BspPI	GGATC	4 cut(s)	320, 333, 763, 978
BspQI	GCTCTTC	1 cut(s)	348
BspTNI	GGTCTC	1 cut(s)	525
BsrBI	CCGCTC	1 cut(s)	82
BsrI	ACTGG	3 cut(s)	521, 633, 693
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	5 cut(s)	325, 421, 658, 768, 970
Bst2UI	CCWGG	2 cut(s)	186, 330
Bst4CI	ACNGT	2 cut(s)	833, 926
Bst6I	CTCTTC	2 cut(s)	348, 546
BstBAI	YACGTR	1 cut(s)	967
BstC8I	GCNNGC	3 cut(s)	105, 168, 983
BstDEI	CTNAG	8 cut(s)	144, 171, 359, 383, 462, 824, 915, 977
BstF5I	GGATG	2 cut(s)	436, 697
BstFNI	CGCG	2 cut(s)	302, 420
BstKTI	GATC	5 cut(s)	328, 424, 661, 771, 973
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	5 cut(s)	325, 421, 658, 768, 970
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 17
BstNI	CCWGG	2 cut(s)	186, 330
BstNSI	RCATGY	2 cut(s)	764, 811
BstSCI	CCNGG	3 cut(s)	184, 328, 595
BstUI	CGCG	2 cut(s)	302, 420
BstV1I	GCAGC	5 cut(s)	17, 23, 152, 361, 931
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	612, 799
BtgZI	GCGATG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	436, 697
BtuMI	TCGCGA	1 cut(s)	420
Cac8I	GCNNGC	3 cut(s)	105, 168, 983
Cfr13I	GGNCC	1 cut(s)	875
CseI	GACGC	1 cut(s)	507
Csp6I	GTAC	4 cut(s)	178, 200, 234, 636
CspCI	CAANNNNNGTGG	2 cut(s)	747, 782
CviQI	GTAC	4 cut(s)	178, 200, 234, 636
DdeI	CTNAG	8 cut(s)	144, 171, 359, 383, 462, 824, 915, 977
DpnI	GATC	5 cut(s)	327, 423, 660, 770, 972
DpnII	GATC	5 cut(s)	325, 421, 658, 768, 970
EaeI	YGGCCR	2 cut(s)	610, 797
Eam1104I	CTCTTC	2 cut(s)	348, 546
EarI	CTCTTC	2 cut(s)	348, 546
Ecl136II	GAGCTC	2 cut(s)	123, 358
Eco24I	GRGCYC	2 cut(s)	125, 360
Eco31I	GGTCTC	1 cut(s)	525
Eco32I	GATATC	1 cut(s)	821
Eco47I	GGWCC	1 cut(s)	875
Eco53kI	GAGCTC	2 cut(s)	123, 358
Eco57I	CTGAAG	3 cut(s)	99, 570, 684
Eco72I	CACGTG	1 cut(s)	967
Eco81I	CCTNAGG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	2 cut(s)	123, 358
EcoRII	CCWGG	2 cut(s)	184, 328
EcoRV	GATATC	1 cut(s)	821
EcoT22I	ATGCAT	1 cut(s)	780
EcoT38I	GRGCYC	2 cut(s)	125, 360
FaqI	GGGAC	2 cut(s)	612, 633
FauNDI	CATATG	1 cut(s)	615
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	6 cut(s)	6, 9, 12, 141, 375, 945
FokI	GGATG	2 cut(s)	443, 704
FriOI	GRGCYC	2 cut(s)	125, 360
Fsp4HI	GCNGC	6 cut(s)	6, 9, 12, 141, 375, 945
GluI	GCNGC	6 cut(s)	6, 9, 12, 141, 375, 945
HaeIII	GGCC	2 cut(s)	612, 799
HapII	CCGG	1 cut(s)	596
HgaI	GACGC	1 cut(s)	507
HincII	GTYRAC	2 cut(s)	790, 922
HindII	GTYRAC	2 cut(s)	790, 922
HinfI	GANTC	2 cut(s)	278, 937
HpaI	GTTAAC	1 cut(s)	790
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	3 cut(s)	31, 146, 668
Hpy166II	GTNNAC	2 cut(s)	790, 922
Hpy188I	TCNGA	3 cut(s)	118, 362, 916
Hpy188III	TCNNGA	7 cut(s)	282, 419, 461, 543, 702, 826, 856
Hpy8I	GTNNAC	2 cut(s)	790, 922
Hpy99I	CGWCG	1 cut(s)	501
HpyCH4III	ACNGT	2 cut(s)	833, 926
HpyCH4IV	ACGT	2 cut(s)	451, 966
HpyCH4V	TGCA	8 cut(s)	95, 140, 257, 456, 561, 778, 902, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 17
HpyF3I	CTNAG	8 cut(s)	144, 171, 359, 383, 462, 824, 915, 977
HpySE526I	ACGT	2 cut(s)	451, 966
Ksp22I	TGATCA	1 cut(s)	658
KspAI	GTTAAC	1 cut(s)	790
Kzo9I	GATC	5 cut(s)	325, 421, 658, 768, 970
LguI	GCTCTTC	1 cut(s)	348
Lsp1109I	GCAGC	5 cut(s)	17, 23, 152, 361, 931
LweI	GCATC	2 cut(s)	301, 956
MaeII	ACGT	2 cut(s)	451, 966
MaeIII	GTNAC	3 cut(s)	48, 403, 694
MalI	GATC	5 cut(s)	327, 423, 660, 770, 972
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	5 cut(s)	325, 421, 658, 768, 970
MboII	GAAGA	3 cut(s)	105, 365, 563
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	125, 360
MlsI	TGGCCA	2 cut(s)	612, 799
MluCI	AATT	4 cut(s)	344, 366, 393, 740
MluNI	TGGCCA	2 cut(s)	612, 799
Mox20I	TGGCCA	2 cut(s)	612, 799
Mph1103I	ATGCAT	1 cut(s)	780
MscI	TGGCCA	2 cut(s)	612, 799
MseI	TTAA	3 cut(s)	392, 789, 1012
MslI	CAYNNNNRTG	2 cut(s)	429, 606
Msp20I	TGGCCA	2 cut(s)	612, 799
MspA1I	CMGCKG	1 cut(s)	574
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	3 cut(s)	186, 330, 597
MvaI	CCWGG	2 cut(s)	186, 330
MvnI	CGCG	2 cut(s)	302, 420
MwoI	GCNNNNNNNGC	2 cut(s)	11, 17
NciI	CCSGG	1 cut(s)	597
NdeI	CATATG	1 cut(s)	615
NdeII	GATC	5 cut(s)	325, 421, 658, 768, 970
NlaIV	GGNNCC	2 cut(s)	327, 830
NmuCI	GTSAC	1 cut(s)	48
NruI	TCGCGA	1 cut(s)	420
NsiI	ATGCAT	1 cut(s)	780
NspI	RCATGY	2 cut(s)	764, 811
PciSI	GCTCTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	278, 937
PfoI	TCCNGGA	1 cut(s)	595
PkrI	GCNGC	6 cut(s)	7, 10, 13, 142, 376, 946
PmaCI	CACGTG	1 cut(s)	967
PmlI	CACGTG	1 cut(s)	967
Ppu21I	YACGTR	1 cut(s)	967
Psp124BI	GAGCTC	2 cut(s)	125, 360
Psp1406I	AACGTT	1 cut(s)	451
Psp6I	CCWGG	2 cut(s)	184, 328
PspCI	CACGTG	1 cut(s)	967
PspGI	CCWGG	2 cut(s)	184, 328
PspN4I	GGNNCC	2 cut(s)	327, 830
PspPI	GGNCC	1 cut(s)	875
PsrI	GAACNNNNNNTAC	2 cut(s)	832, 864
PsuI	RGATCY	1 cut(s)	325
RruI	TCGCGA	1 cut(s)	420
RsaI	GTAC	4 cut(s)	179, 201, 235, 637
RsaNI	GTAC	4 cut(s)	178, 200, 234, 636
RseI	CAYNNNNRTG	2 cut(s)	429, 606
SacI	GAGCTC	2 cut(s)	125, 360
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	392, 789, 1012
SatI	GCNGC	6 cut(s)	6, 9, 12, 141, 375, 945
Sau3AI	GATC	5 cut(s)	325, 421, 658, 768, 970
Sau96I	GGNCC	1 cut(s)	875
ScaI	AGTACT	1 cut(s)	637
ScrFI	CCNGG	3 cut(s)	186, 330, 597
SduI	GDGCHC	2 cut(s)	125, 360
SfaNI	GCATC	2 cut(s)	301, 956
SinI	GGWCC	1 cut(s)	875
SmiMI	CAYNNNNRTG	2 cut(s)	429, 606
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	4 cut(s)	344, 366, 393, 740
SsiI	CCGC	4 cut(s)	9, 80, 567, 574
SstI	GAGCTC	2 cut(s)	125, 360
StyD4I	CCNGG	3 cut(s)	184, 328, 595
TaaI	ACNGT	2 cut(s)	833, 926
TaiI	ACGT	2 cut(s)	454, 969
TaqII	GACCGA	1 cut(s)	78
TasI	AATT	4 cut(s)	344, 366, 393, 740
TatI	WGTACW	1 cut(s)	635
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	278, 937
Tru1I	TTAA	3 cut(s)	392, 789, 1012
Tru9I	TTAA	3 cut(s)	392, 789, 1012
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	5 cut(s)	5, 11, 140, 374, 944
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	3 cut(s)	366, 498, 617
VpaK11BI	GGWCC	1 cut(s)	875
XapI	RAATTY	2 cut(s)	344, 740
XceI	RCATGY	2 cut(s)	764, 811
ZrmI	AGTACT	1 cut(s)	637
Zsp2I	ATGCAT	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.