Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Reverse (-)

35686734 .. 35688013

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGATGTTCAACTACTGGTTCTGTTGTTTTATTTTACTGCACAATTTTTATCAAGCATTACAGATTGACATCTTTTTTTGTGGTCTTATAGAATTAAGGAGTAAAAATTTATTTTCAATTCAGGAGTACCCTCCTGGTGTTGTGCTTGTACCTATGGGAAGCAGGACAGGAAAACCTTTTCGTACAACAAACCTGATTGTTTTTGCACCTAAAACTGTTCCAAATGATTCTGGAAAGAATGGTTTTATCGCGTGTGGAGATGCGTTGATAGTGGATCCTAGGTGTCAGTCTAAATTCCATGAAGAGCTCAGACAAATTGTAGCTGCTTTGCCGAGAAAGTTAATTGTGTTTGTTACTCATCATCATCGCGATCATGTGGATGGTCTTTCAGTTATTCAACGTTGCAATCCTGAGGCTACATTATTAGCACATGAAAACACCATGCGACGCATTGGGAAAGATGACTGGTCTCTTGGCTTTACTGCTATTTCTGGAACTGAAGAGATTTGCATTGGCGGTCAGCGGTTGATTGCCATTTTCTCTCCGGTAGTTCTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

186

Amino Acids

20.99

Weight (kDa)

8.2

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	251, 369
AciI	CCGC	2 cut(s)	516, 523
AclI	AACGTT	1 cut(s)	400
AclWI	GGATC	2 cut(s)	269, 282
AcsI	RAATTY	2 cut(s)	106, 293
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	3 cut(s)	128, 150, 184
AgsI	TTSAA	3 cut(s)	10, 117, 398
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	2 cut(s)	307, 323
AluI	AGCT	2 cut(s)	307, 323
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	269, 282
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	2 cut(s)	106, 293
AspA2I	CCTAGG	1 cut(s)	278
AvrII	CCTAGG	1 cut(s)	278
AxyI	CCTNAGG	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	1 cut(s)	324
BlnI	CCTAGG	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	544
Bse1I	ACTGG	2 cut(s)	20, 470
Bse21I	CCTNAGG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	385
BseJI	GATNNNNATC	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	322, 402
BseNI	ACTGG	2 cut(s)	20, 470
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	23
Bsh1236I	CGCG	2 cut(s)	251, 369
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	545
BsmAI	GTCTC	1 cut(s)	474
Bso31I	GGTCTC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	274, 370
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	2 cut(s)	516, 523
BspCNI	CTCAG	2 cut(s)	321, 403
BspFNI	CGCG	2 cut(s)	251, 369
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	2 cut(s)	269, 282
BspQI	GCTCTTC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	20, 470
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	2 cut(s)	274, 370
BssT1I	CCWWGG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	297, 495
BstDEI	CTNAG	2 cut(s)	308, 411
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	2 cut(s)	251, 369
BstKTI	GATC	2 cut(s)	277, 373
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	2 cut(s)	274, 370
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstUI	CGCG	2 cut(s)	251, 369
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	411
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	385
BtuMI	TCGCGA	1 cut(s)	369
CseI	GACGC	1 cut(s)	456
Csp6I	GTAC	3 cut(s)	127, 149, 183
CviAII	CATG	4 cut(s)	299, 374, 431, 442
CviJI	RGCY	4 cut(s)	307, 323, 416, 477
CviKI_1	RGCY	4 cut(s)	307, 323, 416, 477
CviQI	GTAC	3 cut(s)	127, 149, 183
DdeI	CTNAG	2 cut(s)	308, 411
DpnI	GATC	2 cut(s)	276, 372
DpnII	GATC	2 cut(s)	274, 370
Eam1104I	CTCTTC	2 cut(s)	297, 495
EarI	CTCTTC	2 cut(s)	297, 495
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	519
Eco81I	CCTNAGG	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	4 cut(s)	302, 377, 434, 445
FaiI	YATR	6 cut(s)	89, 155, 300, 375, 432, 443
FatI	CATG	4 cut(s)	298, 373, 430, 441
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	1 cut(s)	324
HapII	CCGG	1 cut(s)	545
HgaI	GACGC	1 cut(s)	456
Hin1II	CATG	4 cut(s)	302, 377, 434, 445
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	545
Hpy188I	TCNGA	1 cut(s)	311
Hpy188III	TCNNGA	5 cut(s)	122, 231, 368, 410, 492
Hpy99I	CGWCG	1 cut(s)	450
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	4 cut(s)	40, 206, 405, 510
HpyF3I	CTNAG	2 cut(s)	308, 411
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	4 cut(s)	302, 377, 434, 445
Kzo9I	GATC	2 cut(s)	274, 370
LguI	GCTCTTC	1 cut(s)	297
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	2 cut(s)	276, 372
MboI	GATC	2 cut(s)	274, 370
MboII	GAAGA	2 cut(s)	314, 512
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	7 cut(s)	43, 92, 106, 117, 293, 315, 342
MnlI	CCTC	2 cut(s)	141, 406
MseI	TTAA	2 cut(s)	95, 341
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	523
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	2 cut(s)	251, 369
NdeII	GATC	2 cut(s)	274, 370
NlaIII	CATG	4 cut(s)	302, 377, 434, 445
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	357
NruI	TCGCGA	1 cut(s)	369
PciSI	GCTCTTC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	309
Psp1406I	AACGTT	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	274
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	3 cut(s)	128, 150, 184
RsaNI	GTAC	3 cut(s)	127, 149, 183
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	95, 341
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	274, 370
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	8 cut(s)	154, 178, 195, 211, 284, 309, 325, 403
SfaNI	GCATC	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	378
Sse9I	AATT	7 cut(s)	43, 92, 106, 117, 293, 315, 342
SsiI	CCGC	2 cut(s)	516, 523
SspMI	CTAG	1 cut(s)	279
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	403
TasI	AATT	7 cut(s)	43, 92, 106, 117, 293, 315, 342
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	95, 341
Tru9I	TTAA	2 cut(s)	95, 341
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	315, 447
XapI	RAATTY	2 cut(s)	106, 293
XmaJI	CCTAGG	1 cut(s)	278
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.