Rw1G015910
ERF Family

Metallo-beta-lactamase superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
35480802 .. 35489213
8412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G015910.1

Sequence Viewer

Length: 1260 bp
ATGGGCGCGGTATATTTCACTCCATGTGTTTGGCATTTTGATTTTTGTAGTGCACTCTTACAACACTCTCTCAATCTCGATCTGCAAGTCTGCAACCATGGCCGAAGCTCAAGAATCCGATCAAAAGAGCCACAAGTCTCTCGTGGTTGTTCCATGGCAGCCGCAGCTCGGGCTTTCACTCTCTCTCGCCTCACCGACCTGTCACTCAAGCCCCGCCACCCACAACCACCACCGCTCTCTCGGTCTGCAACGAAGCACGCCATGTCTTCAGAGAGCTCTCCTCCTCTGATTGCAGCTCAGCTCAATCACCTCCCTCTGCTCGCTAAGGAGTACCCTCCTGGTGTTGTGCTTGTACCTATGGGAAGCAGGACAGGAAAACCTTTTCGTACAACAAACCTGATTGTTTTTGCACCTAAAAATGTTCCAAATGATTCTGGAAAGAATGGTTTTATCGCGTGTGGAGATGCGTTGATAGTGGATCCTGGGTGTCAGTCTAAATTCCATGAAGAGCTCAGACAAATTGTAGCTGCTTTGCCGAGAAAGTTAATTGTGTTTGTTACTCATCATCATCGCGATCATGTGGATGGTCTTTCAGTTATTCAACGTTGCAATCCTGAGGCTACATTATTAGCACATGAAAACACCATGCGACGCATTGGGAAAGATGACTGGTCTCTTGGCTTTACTGCTATTTCTGGAACTGAAGAGATTTGCATTGGCGGTCAGCGGTTGATTGCCATTTTCTCTCCGGGACATACAGATGGCCATATGGGACTGCTTCATGCCAGTACTCACTCATTGATTGTAGGTGATCATTGTGTGGGTCAAGGTAGTGCCATACTGGATGTTACTTCCGGGGGAAATATGACTGATTACTTTCAATCAACATACAAATTTATGGAGATTTCCCCACATGCTTTGATCCCCATGCATGGGAGAGTTAACCTCTGGCCAAAGCACATGCTTTGTGGATATCTCAGGAACCGTAGAGGTAGAGAAAGTTCCATCTTGAAAGCGATAGAAAATGGAGCTGAAACATTATTTGATATAGTTGCAAATGTATATTCTGAGGTTGACCGTAGCTTTTGGATTCCTGCTGCATCAAATGTGAGGCTTCACGTGGATCATCTAAGCCAGCAAGATAAGTTGCCAAAGAGGCAAACACAGATGTTGATTGTTGGGGTAAACTTATCTGCTTCTTCCATTTATTCTTCCTTTCCTTCCCTTGTGCTGATTTGGACCAACTACTTTGGCATGTAG

Protein Analysis

419

Amino Acids

46.19

Weight (kDa)

8.99

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 153 - 283 9.3e-07 Metallo-beta-lactamase superfamily
WHD_BLACT PF17778 346 - 382 3.2e-06 Beta-lactamase associated winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 235
AccII CGCG 3 cut(s) 8, 455, 573
AciI CCGC 6 cut(s) 8, 162, 214, 233, 720, 727
AclI AACGTT 1 cut(s) 604
AclWI GGATC 4 cut(s) 473, 486, 916, 1131
AcoI YGGCCR 3 cut(s) 100, 763, 950
AcsI RAATTY 2 cut(s) 497, 893
AcuI CTGAAG 2 cut(s) 252, 723
AcvI CACGTG 1 cut(s) 1120
AfaI GTAC 4 cut(s) 332, 354, 388, 790
AfiI CCNNNNNNNGG 3 cut(s) 168, 932, 933
AgsI TTSAA 3 cut(s) 602, 881, 1012
AjnI CCWGG 2 cut(s) 337, 481
AluBI AGCT 9 cut(s) 108, 167, 276, 296, 301, 511, 527, 1031, 1083
AluI AGCT 9 cut(s) 108, 167, 276, 296, 301, 511, 527, 1031, 1083
Alw21I GWGCWC 3 cut(s) 55, 278, 513
Alw26I GTCTC 2 cut(s) 142, 678
Alw44I GTGCAC 1 cut(s) 51
AlwI GGATC 4 cut(s) 473, 486, 916, 1131
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 3 cut(s) 100, 763, 950
ApaLI GTGCAC 1 cut(s) 51
ApeKI GCWGC 5 cut(s) 158, 164, 293, 527, 1097
ApoI RAATTY 2 cut(s) 497, 893
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 1239
AsuC2I CCSGG 2 cut(s) 750, 856
AsuHPI GGTGA 3 cut(s) 184, 299, 821
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 1 cut(s) 1239
AxyI CCTNAGG 1 cut(s) 615
BaeGI GKGCMC 1 cut(s) 55
BalI TGGCCA 2 cut(s) 765, 952
BamHI GGATCC 1 cut(s) 478
BanII GRGCYC 2 cut(s) 278, 513
BauI CACGAG 1 cut(s) 141
BbrPI CACGTG 1 cut(s) 1120
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 3 cut(s) 55, 278, 513
BbvI GCAGC 5 cut(s) 170, 176, 305, 514, 1084
BccI CCATC 3 cut(s) 578, 755, 1013
BciT130I CCWGG 2 cut(s) 339, 483
BclI TGATCA 1 cut(s) 811
BcnI CCSGG 2 cut(s) 750, 856
BcoDI GTCTC 2 cut(s) 142, 678
BglI GCCNNNNNGGC 1 cut(s) 1156
BisI GCNGC 6 cut(s) 159, 162, 165, 294, 528, 1098
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 6 cut(s) 160, 163, 166, 295, 529, 1099
BmcAI AGTACT 1 cut(s) 790
Bme1390I CCNGG 4 cut(s) 339, 483, 750, 856
Bme18I GGWCC 1 cut(s) 1239
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 1239
BmiI GGNNCC 2 cut(s) 480, 983
BmrFI CCNGG 4 cut(s) 339, 483, 750, 856
BmsI GCATC 2 cut(s) 454, 1109
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 4 cut(s) 265, 297, 930, 962
Bpu10I CCTNAGC 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 94, 191
BpuMI CCSGG 2 cut(s) 750, 856
BsaAI YACGTR 1 cut(s) 1120
BsaI GGTCTC 1 cut(s) 678
BsaJI CCNNGG 4 cut(s) 97, 153, 482, 855
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 932, 933
Bse1I ACTGG 3 cut(s) 674, 786, 846
Bse21I CCTNAGG 1 cut(s) 615
BseBI CCWGG 2 cut(s) 339, 483
BseDI CCNNGG 4 cut(s) 97, 153, 482, 855
BseGI GGATG 2 cut(s) 589, 850
BseLI CCNNNNNNNGG 3 cut(s) 168, 932, 933
BseMII CTCAG 5 cut(s) 311, 526, 606, 991, 1059
BseNI ACTGG 3 cut(s) 674, 786, 846
BseRI GAGGAG 2 cut(s) 270, 273
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 5 cut(s) 170, 176, 305, 514, 1084
Bsh1236I CGCG 3 cut(s) 8, 455, 573
BshFI GGCC 3 cut(s) 102, 765, 952
BsiHKAI GWGCWC 3 cut(s) 55, 278, 513
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 2 cut(s) 749, 855
BslFI GGGAC 2 cut(s) 765, 786
BslI CCNNNNNNNGG 3 cut(s) 168, 932, 933
BsmAI GTCTC 2 cut(s) 142, 678
BsmFI GGGAC 2 cut(s) 765, 786
BsnI GGCC 3 cut(s) 102, 765, 952
Bso31I GGTCTC 1 cut(s) 678
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 3 cut(s) 55, 278, 513
Bsp143I GATC 7 cut(s) 79, 119, 478, 574, 811, 921, 1123
Bsp1720I GCTNAGC 1 cut(s) 297
Bsp19I CCATGG 2 cut(s) 97, 153
Bsp68I TCGCGA 1 cut(s) 573
BspACI CCGC 6 cut(s) 8, 162, 214, 233, 720, 727
BspANI GGCC 3 cut(s) 102, 765, 952
BspCNI CTCAG 5 cut(s) 310, 525, 607, 990, 1060
BspFNI CGCG 3 cut(s) 8, 455, 573
BspLI GGNNCC 2 cut(s) 480, 983
BspPI GGATC 4 cut(s) 473, 486, 916, 1131
BspQI GCTCTTC 1 cut(s) 501
BspTNI GGTCTC 1 cut(s) 678
BsrBI CCGCTC 1 cut(s) 235
BsrI ACTGG 3 cut(s) 674, 786, 846
BssECI CCNNGG 4 cut(s) 97, 153, 482, 855
BssMI GATC 7 cut(s) 79, 119, 478, 574, 811, 921, 1123
BssSI CACGAG 1 cut(s) 141
BssT1I CCWWGG 2 cut(s) 97, 153
Bst2BI CACGAG 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 339, 483
Bst4CI ACNGT 2 cut(s) 986, 1079
Bst6I CTCTTC 2 cut(s) 501, 699
BstBAI YACGTR 1 cut(s) 1120
BstC8I GCNNGC 3 cut(s) 258, 321, 1136
BstDEI CTNAG 7 cut(s) 297, 324, 512, 615, 977, 1068, 1130
BstDSI CCRYGG 2 cut(s) 97, 153
BstF5I GGATG 2 cut(s) 589, 850
BstFNI CGCG 3 cut(s) 8, 455, 573
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 7 cut(s) 82, 122, 481, 577, 814, 924, 1126
BstMAI GTCTC 2 cut(s) 142, 678
BstMBI GATC 7 cut(s) 79, 119, 478, 574, 811, 921, 1123
BstMWI GCNNNNNNNGC 4 cut(s) 99, 164, 170, 1156
BstNI CCWGG 2 cut(s) 339, 483
BstNSI RCATGY 3 cut(s) 917, 964, 1258
BstSCI CCNGG 4 cut(s) 337, 481, 748, 854
BstSLI GKGCMC 1 cut(s) 55
BstUI CGCG 3 cut(s) 8, 455, 573
BstV1I GCAGC 5 cut(s) 170, 176, 305, 514, 1084
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 478
BstXI CCANNNNNNTGG 1 cut(s) 30
BstYI RGATCY 1 cut(s) 478
Bsu36I CCTNAGG 1 cut(s) 615
BsuRI GGCC 3 cut(s) 102, 765, 952
BtgI CCRYGG 2 cut(s) 97, 153
BtgZI GCGATG 1 cut(s) 554
BtsCI GGATG 2 cut(s) 589, 850
BtuMI TCGCGA 1 cut(s) 573
Cac8I GCNNGC 3 cut(s) 258, 321, 1136
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 1239
CseI GACGC 1 cut(s) 660
Csp6I GTAC 4 cut(s) 331, 353, 387, 789
CspCI CAANNNNNGTGG 2 cut(s) 900, 935
CviQI GTAC 4 cut(s) 331, 353, 387, 789
DdeI CTNAG 7 cut(s) 297, 324, 512, 615, 977, 1068, 1130
DpnI GATC 7 cut(s) 81, 121, 480, 576, 813, 923, 1125
DpnII GATC 7 cut(s) 79, 119, 478, 574, 811, 921, 1123
EaeI YGGCCR 3 cut(s) 100, 763, 950
Eam1104I CTCTTC 2 cut(s) 501, 699
EarI CTCTTC 2 cut(s) 501, 699
Ecl136II GAGCTC 2 cut(s) 276, 511
Eco130I CCWWGG 2 cut(s) 97, 153
Eco24I GRGCYC 2 cut(s) 278, 513
Eco31I GGTCTC 1 cut(s) 678
Eco32I GATATC 1 cut(s) 974
Eco47I GGWCC 1 cut(s) 1239
Eco53kI GAGCTC 2 cut(s) 276, 511
Eco57I CTGAAG 2 cut(s) 252, 723
Eco72I CACGTG 1 cut(s) 1120
Eco81I CCTNAGG 1 cut(s) 615
Eco88I CYCGRG 1 cut(s) 168
EcoICRI GAGCTC 2 cut(s) 276, 511
EcoRII CCWGG 2 cut(s) 337, 481
EcoRV GATATC 1 cut(s) 974
EcoT14I CCWWGG 2 cut(s) 97, 153
EcoT22I ATGCAT 1 cut(s) 933
EcoT38I GRGCYC 2 cut(s) 278, 513
ErhI CCWWGG 2 cut(s) 97, 153
FaqI GGGAC 2 cut(s) 765, 786
FauI CCCGC 1 cut(s) 221
FauNDI CATATG 1 cut(s) 768
FbaI TGATCA 1 cut(s) 811
Fnu4HI GCNGC 6 cut(s) 159, 162, 165, 294, 528, 1098
FokI GGATG 2 cut(s) 596, 857
FriOI GRGCYC 2 cut(s) 278, 513
Fsp4HI GCNGC 6 cut(s) 159, 162, 165, 294, 528, 1098
GlaI GCGC 1 cut(s) 7
GluI GCNGC 6 cut(s) 159, 162, 165, 294, 528, 1098
HaeIII GGCC 3 cut(s) 102, 765, 952
HapII CCGG 2 cut(s) 749, 855
HgaI GACGC 1 cut(s) 660
HhaI GCGC 1 cut(s) 8
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 2 cut(s) 943, 1075
HindII GTYRAC 2 cut(s) 943, 1075
HinfI GANTC 3 cut(s) 114, 431, 1090
HpaI GTTAAC 1 cut(s) 943
HpaII CCGG 2 cut(s) 749, 855
HphI GGTGA 3 cut(s) 184, 299, 821
Hpy166II GTNNAC 4 cut(s) 53, 943, 1075, 1186
Hpy188I TCNGA 5 cut(s) 119, 271, 288, 515, 1069
Hpy188III TCNNGA 8 cut(s) 77, 111, 435, 572, 614, 696, 979, 1009
Hpy8I GTNNAC 4 cut(s) 53, 943, 1075, 1186
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 1 cut(s) 1230
HpyCH4III ACNGT 2 cut(s) 986, 1079
HpyCH4IV ACGT 2 cut(s) 604, 1119
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 164, 170, 1156
HpyF3I CTNAG 7 cut(s) 297, 324, 512, 615, 977, 1068, 1130
HpySE526I ACGT 2 cut(s) 604, 1119
HspAI GCGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 811
KspAI GTTAAC 1 cut(s) 943
Kzo9I GATC 7 cut(s) 79, 119, 478, 574, 811, 921, 1123
LguI GCTCTTC 1 cut(s) 501
LmnI GCTCC 1 cut(s) 1028
Lsp1109I GCAGC 5 cut(s) 170, 176, 305, 514, 1084
LweI GCATC 2 cut(s) 454, 1109
MaeII ACGT 2 cut(s) 604, 1119
MaeIII GTNAC 3 cut(s) 201, 556, 847
MalI GATC 7 cut(s) 81, 121, 480, 576, 813, 923, 1125
MbiI CCGCTC 1 cut(s) 235
MboI GATC 7 cut(s) 79, 119, 478, 574, 811, 921, 1123
MboII GAAGA 5 cut(s) 258, 518, 716, 1191, 1203
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 3 cut(s) 55, 278, 513
MlsI TGGCCA 2 cut(s) 765, 952
MluCI AATT 4 cut(s) 497, 519, 546, 893
MluNI TGGCCA 2 cut(s) 765, 952
Mox20I TGGCCA 2 cut(s) 765, 952
Mph1103I ATGCAT 1 cut(s) 933
MscI TGGCCA 2 cut(s) 765, 952
MseI TTAA 2 cut(s) 545, 942
MslI CAYNNNNRTG 2 cut(s) 582, 759
Msp20I TGGCCA 2 cut(s) 765, 952
MspA1I CMGCKG 1 cut(s) 727
MspI CCGG 2 cut(s) 749, 855
MspR9I CCNGG 4 cut(s) 339, 483, 750, 856
MvaI CCWGG 2 cut(s) 339, 483
MvnI CGCG 3 cut(s) 8, 455, 573
MwoI GCNNNNNNNGC 4 cut(s) 99, 164, 170, 1156
NciI CCSGG 2 cut(s) 750, 856
NcoI CCATGG 2 cut(s) 97, 153
NdeI CATATG 1 cut(s) 768
NdeII GATC 7 cut(s) 79, 119, 478, 574, 811, 921, 1123
NlaIV GGNNCC 2 cut(s) 480, 983
NmeAIII GCCGAG 1 cut(s) 561
NmuCI GTSAC 1 cut(s) 201
NruI TCGCGA 1 cut(s) 573
NsiI ATGCAT 1 cut(s) 933
NspI RCATGY 3 cut(s) 917, 964, 1258
PciSI GCTCTTC 1 cut(s) 501
PfeI GAWTC 3 cut(s) 114, 431, 1090
PfoI TCCNGGA 1 cut(s) 748
PkrI GCNGC 6 cut(s) 160, 163, 166, 295, 529, 1099
PmaCI CACGTG 1 cut(s) 1120
PmlI CACGTG 1 cut(s) 1120
Ppu21I YACGTR 1 cut(s) 1120
Psp124BI GAGCTC 2 cut(s) 278, 513
Psp1406I AACGTT 1 cut(s) 604
Psp6I CCWGG 2 cut(s) 337, 481
PspCI CACGTG 1 cut(s) 1120
PspGI CCWGG 2 cut(s) 337, 481
PspN4I GGNNCC 2 cut(s) 480, 983
PspPI GGNCC 1 cut(s) 1239
PsrI GAACNNNNNNTAC 2 cut(s) 985, 1017
PsuI RGATCY 1 cut(s) 478
RruI TCGCGA 1 cut(s) 573
RsaI GTAC 4 cut(s) 332, 354, 388, 790
RsaNI GTAC 4 cut(s) 331, 353, 387, 789
RseI CAYNNNNRTG 2 cut(s) 582, 759
SacI GAGCTC 2 cut(s) 278, 513
SapI GCTCTTC 1 cut(s) 501
SaqAI TTAA 2 cut(s) 545, 942
SatI GCNGC 6 cut(s) 159, 162, 165, 294, 528, 1098
Sau3AI GATC 7 cut(s) 79, 119, 478, 574, 811, 921, 1123
Sau96I GGNCC 1 cut(s) 1239
ScaI AGTACT 1 cut(s) 790
ScrFI CCNGG 4 cut(s) 339, 483, 750, 856
SduI GDGCHC 3 cut(s) 55, 278, 513
SfaNI GCATC 2 cut(s) 454, 1109
SinI GGWCC 1 cut(s) 1239
SmiMI CAYNNNNRTG 2 cut(s) 582, 759
SmlI CTYRAG 2 cut(s) 109, 206
SmoI CTYRAG 2 cut(s) 109, 206
Sse9I AATT 4 cut(s) 497, 519, 546, 893
SsiI CCGC 6 cut(s) 8, 162, 214, 233, 720, 727
SstI GAGCTC 2 cut(s) 278, 513
StyD4I CCNGG 4 cut(s) 337, 481, 748, 854
StyI CCWWGG 2 cut(s) 97, 153
TaaI ACNGT 2 cut(s) 986, 1079
TaiI ACGT 2 cut(s) 607, 1122
TaqI TCGA 1 cut(s) 78
TaqII GACCGA 1 cut(s) 231
TasI AATT 4 cut(s) 497, 519, 546, 893
TatI WGTACW 1 cut(s) 788
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 3 cut(s) 114, 431, 1090
Tru1I TTAA 2 cut(s) 545, 942
Tru9I TTAA 2 cut(s) 545, 942
TseFI GTSAC 1 cut(s) 201
TseI GCWGC 5 cut(s) 158, 164, 293, 527, 1097
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 3 cut(s) 519, 651, 770
VneI GTGCAC 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 1239
XapI RAATTY 2 cut(s) 497, 893
XceI RCATGY 3 cut(s) 917, 964, 1258
ZrmI AGTACT 1 cut(s) 790
Zsp2I ATGCAT 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.