Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Reverse (-)

57080947 .. 57084371

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTGACACCGGTGACAAGAAGCCTAATGCCAATGCCAAGGTGAAAGTCAAGCATGGAGGTGGTGGTGGTGGTGGTCTTTCAGTTATTCAACGTTGCAATCCTGAGGCTACATTATTAGCACATGAAAACACCATGCGACGCATTGGGAAAGATGACTGGTCTCTTGGCTTTACTGCTATTTCTGGAACTGAAGAGATTTGCATTGGCGGTCAGCGGTTGATTGCCATTTTCTCTCCGGGACATACAGATGGCCATATGGGACTGCTTCATGCCAGTACTCACTCATTGATTGTAGGTGATCATTGTGTGGGTCAAGGTAGTGCCATACTGGATGTTACTTCCGGGGGAAATATGACTATTTCCCCACATGCTTTGATCCCCATGCATGGGAGAGTTAACCTCTGGCCAAAGCACATGCTTTGTGGATATCTCAGGAACCGTAGAGGTAGAGAAAGTTCCATCTTGAAAGCGATAGAAAATGGAGCTGAAACATTATTTGATATAGTTCTTTGGATTCCTGCTGCATCAAATGTGAGGCTTCACGTGGATCATCTAAGCCAGCAAGATAAGTTGCCAAAGAGGCAAACACAGATGTTGATTGTTGGGGTAAACTTATCTGCTTCTTCCATTTATTCTTCCTTTCCTTCCCTTGTGCTGATTTGGACCAACTACTTTGGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

228

Amino Acids

24.58

Weight (kDa)

8.96

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	210, 217
AclI	AACGTT	1 cut(s)	94
AclWI	GGATC	2 cut(s)	373, 558
AcoI	YGGCCR	2 cut(s)	253, 407
AcuI	CTGAAG	1 cut(s)	213
AcvI	CACGTG	1 cut(s)	547
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	2 cut(s)	389, 390
AgeI	ACCGGT	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	92, 469
AluBI	AGCT	1 cut(s)	488
AluI	AGCT	1 cut(s)	488
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	373, 558
AoxI	GGCC	2 cut(s)	253, 407
ApeKI	GCWGC	1 cut(s)	524
AsiGI	ACCGGT	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	666
AsuC2I	CCSGG	2 cut(s)	240, 346
AsuHPI	GGTGA	3 cut(s)	26, 55, 311
AvaII	GGWCC	1 cut(s)	666
AxyI	CCTNAGG	1 cut(s)	105
BalI	TGGCCA	2 cut(s)	255, 409
BbrPI	CACGTG	1 cut(s)	547
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	245, 470
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	2 cut(s)	240, 346
BcoDI	GTCTC	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	583
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
BmcAI	AGTACT	1 cut(s)	280
Bme1390I	CCNGG	2 cut(s)	240, 346
Bme18I	GGWCC	1 cut(s)	666
BmgT120I	GGNCC	1 cut(s)	666
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	2 cut(s)	240, 346
BmsI	GCATC	1 cut(s)	536
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
BpuMI	CCSGG	2 cut(s)	240, 346
BsaAI	YACGTR	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	39, 345
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 390
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	3 cut(s)	164, 276, 336
Bse21I	CCTNAGG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	39, 345
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	389, 390
BseMII	CTCAG	2 cut(s)	96, 448
BseNI	ACTGG	3 cut(s)	164, 276, 336
BseXI	GCAGC	1 cut(s)	511
BshFI	GGCC	2 cut(s)	255, 409
BshTI	ACCGGT	1 cut(s)	11
BsiSI	CCGG	3 cut(s)	12, 239, 345
BslFI	GGGAC	2 cut(s)	255, 276
BslI	CCNNNNNNNGG	2 cut(s)	389, 390
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	2 cut(s)	255, 276
BsnI	GGCC	2 cut(s)	255, 409
Bso31I	GGTCTC	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	301, 378, 550
BspACI	CCGC	2 cut(s)	210, 217
BspANI	GGCC	2 cut(s)	255, 409
BspCNI	CTCAG	2 cut(s)	97, 447
BspLI	GGNNCC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	373, 558
BspTNI	GGTCTC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	3 cut(s)	164, 276, 336
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	39, 345
BssMI	GATC	3 cut(s)	301, 378, 550
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	3 cut(s)	105, 434, 557
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	3 cut(s)	304, 381, 553
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	3 cut(s)	301, 378, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	583
BstNSI	RCATGY	3 cut(s)	374, 421, 685
BstSCI	CCNGG	2 cut(s)	238, 344
BstV1I	GCAGC	1 cut(s)	511
Bsu36I	CCTNAGG	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	255, 409
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	563
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	666
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	279
CspAI	ACCGGT	1 cut(s)	11
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviAII	CATG	9 cut(s)	56, 125, 136, 272, 371, 385, 389, 418, 682
CviJI	RGCY	9 cut(s)	5, 25, 110, 171, 255, 409, 488, 541, 561
CviKI_1	RGCY	9 cut(s)	5, 25, 110, 171, 255, 409, 488, 541, 561
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	3 cut(s)	105, 434, 557
DpnI	GATC	3 cut(s)	303, 380, 552
DpnII	GATC	3 cut(s)	301, 378, 550
EaeI	YGGCCR	2 cut(s)	253, 407
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	666
Eco57I	CTGAAG	1 cut(s)	213
Eco72I	CACGTG	1 cut(s)	547
Eco81I	CCTNAGG	1 cut(s)	105
EcoRV	GATATC	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	9 cut(s)	59, 128, 139, 275, 374, 388, 392, 421, 685
FaqI	GGGAC	2 cut(s)	255, 276
FatI	CATG	9 cut(s)	55, 124, 135, 271, 370, 384, 388, 417, 681
FauNDI	CATATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	525
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	525
GluI	GCNGC	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	255, 409
HapII	CCGG	3 cut(s)	12, 239, 345
HgaI	GACGC	1 cut(s)	150
Hin1II	CATG	9 cut(s)	59, 128, 139, 275, 374, 388, 392, 421, 685
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	1 cut(s)	517
HpaI	GTTAAC	1 cut(s)	400
HpaII	CCGG	3 cut(s)	12, 239, 345
HphI	GGTGA	3 cut(s)	26, 55, 311
Hpy166II	GTNNAC	2 cut(s)	400, 613
Hpy188III	TCNNGA	4 cut(s)	104, 186, 436, 466
Hpy8I	GTNNAC	2 cut(s)	400, 613
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	657
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	2 cut(s)	94, 546
HpyCH4V	TGCA	4 cut(s)	99, 204, 388, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	583
HpyF3I	CTNAG	3 cut(s)	105, 434, 557
HpySE526I	ACGT	2 cut(s)	94, 546
Hsp92II	CATG	9 cut(s)	59, 128, 139, 275, 374, 388, 392, 421, 685
Ksp22I	TGATCA	1 cut(s)	301
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	301, 378, 550
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	536
MaeII	ACGT	2 cut(s)	94, 546
MaeIII	GTNAC	2 cut(s)	14, 337
MalI	GATC	3 cut(s)	303, 380, 552
MboI	GATC	3 cut(s)	301, 378, 550
MboII	GAAGA	3 cut(s)	206, 618, 630
MlsI	TGGCCA	2 cut(s)	255, 409
MluNI	TGGCCA	2 cut(s)	255, 409
MnlI	CCTC	6 cut(s)	53, 100, 413, 440, 531, 576
Mox20I	TGGCCA	2 cut(s)	255, 409
Mph1103I	ATGCAT	1 cut(s)	390
MscI	TGGCCA	2 cut(s)	255, 409
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	2 cut(s)	60, 249
Msp20I	TGGCCA	2 cut(s)	255, 409
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	3 cut(s)	12, 239, 345
MspR9I	CCNGG	2 cut(s)	240, 346
MwoI	GCNNNNNNNGC	1 cut(s)	583
NciI	CCSGG	2 cut(s)	240, 346
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	3 cut(s)	301, 378, 550
NlaIII	CATG	9 cut(s)	59, 128, 139, 275, 374, 388, 392, 421, 685
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	3 cut(s)	374, 421, 685
PfeI	GAWTC	1 cut(s)	517
PfoI	TCCNGGA	1 cut(s)	238
PinAI	ACCGGT	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	526
PmaCI	CACGTG	1 cut(s)	547
PmlI	CACGTG	1 cut(s)	547
Ppu21I	YACGTR	1 cut(s)	547
Psp1406I	AACGTT	1 cut(s)	94
PspCI	CACGTG	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	666
PsrI	GAACNNNNNNTAC	2 cut(s)	442, 474
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	2 cut(s)	60, 249
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	3 cut(s)	301, 378, 550
Sau96I	GGNCC	1 cut(s)	666
ScaI	AGTACT	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	240, 346
SetI	ASST	9 cut(s)	45, 64, 97, 301, 322, 405, 451, 490, 549
SfaNI	GCATC	1 cut(s)	536
SgrAI	CRCCGGYG	1 cut(s)	11
SinI	GGWCC	1 cut(s)	666
SmiMI	CAYNNNNRTG	2 cut(s)	60, 249
SsiI	CCGC	2 cut(s)	210, 217
StyD4I	CCNGG	2 cut(s)	238, 344
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	2 cut(s)	97, 549
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	141, 260
VpaK11BI	GGWCC	1 cut(s)	666
XceI	RCATGY	3 cut(s)	374, 421, 685
ZrmI	AGTACT	1 cut(s)	280
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.