Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Forward (+)

20619755 .. 20621338

Gene Structure 1584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG210400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGAAGCAGGACAAGAAAACCTTTTCATACAACAAACCTGGTTGTTTTTGCACCTAAAAATGTTCCAAATGATTCTGGAAAGAATGGTTTTATCGCGTGTGGAGATGCGTTGATAGTGGATCCTGGGTGTCAGTCTAAATTCCATGAAGAGGTATGGCATTGCCTCCTCCTCCACCATTGTTGCTTGACAACACCCAAATACTCACCAATCACCATCGACGTTTTGATGTTTGCTAACAAACCCAGCACCACCAACGACAACGTTCTATCCCTTGTGTCACCGGTGGTTGTTGACAACATCAAACCTGCCCTAACACCTACCAGTCGCTGTGCGCCGTTTCTCACCGCGTCTCCTATAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

121

Amino Acids

13.15

Weight (kDa)

7.65

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AccII	CGCG	2 cut(s)	98, 350
AciI	CCGC	1 cut(s)	348
AclI	AACGTT	1 cut(s)	264
AclWI	GGATC	2 cut(s)	116, 129
AcsI	RAATTY	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgeI	ACCGGT	1 cut(s)	283
AjnI	CCWGG	2 cut(s)	39, 124
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	2 cut(s)	116, 129
AlwNI	CAGNNNCTG	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	140
AsiGI	ACCGGT	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	337
AsuHPI	GGTGA	4 cut(s)	198, 205, 273, 337
BamHI	GGATCC	1 cut(s)	121
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	2 cut(s)	41, 126
BcoDI	GTCTC	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	316
Bme1390I	CCNGG	2 cut(s)	41, 126
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	41, 126
BmsI	GCATC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	125
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	160
BseBI	CCWGG	2 cut(s)	41, 126
BseDI	CCNNGG	1 cut(s)	125
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	2 cut(s)	158, 161
BseYI	CCCAGC	1 cut(s)	245
Bsh1236I	CGCG	2 cut(s)	98, 350
BshTI	ACCGGT	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	357
BsmBI	CGTCTC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	348
BspFNI	CGCG	2 cut(s)	98, 350
BspLI	GGNNCC	1 cut(s)	123
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	2 cut(s)	116, 129
BsrDI	GCAATG	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	1 cut(s)	121
Bst2UI	CCWGG	2 cut(s)	41, 126
Bst6I	CTCTTC	1 cut(s)	144
BstFNI	CGCG	2 cut(s)	98, 350
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	121
BstNI	CCWGG	2 cut(s)	41, 126
BstSCI	CCNGG	2 cut(s)	39, 124
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	2 cut(s)	98, 350
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	316
CaiI	CAGNNNCTG	1 cut(s)	330
CfoI	GCGC	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	283
CseI	GACGC	1 cut(s)	339
CsiI	ACCWGGT	1 cut(s)	39
CspAI	ACCGGT	1 cut(s)	283
CspCI	CAANNNNNGTGG	2 cut(s)	164, 199
CviAII	CATG	1 cut(s)	146
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	39, 124
Esp3I	CGTCTC	1 cut(s)	357
FaeI	CATG	1 cut(s)	149
FaiI	YATR	4 cut(s)	30, 147, 157, 359
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FatI	CATG	1 cut(s)	145
GlaI	GCGC	1 cut(s)	336
GsaI	CCCAGC	1 cut(s)	249
HapII	CCGG	1 cut(s)	284
HgaI	GACGC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	4 cut(s)	198, 205, 273, 337
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188III	TCNNGA	1 cut(s)	78
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	224
HpyCH4IV	ACGT	2 cut(s)	222, 264
HpyCH4V	TGCA	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	222, 264
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	9 cut(s)	26, 53, 63, 111, 138, 259, 297, 321, 337
LweI	GCATC	1 cut(s)	97
MabI	ACCWGGT	1 cut(s)	39
MaeII	ACGT	2 cut(s)	222, 264
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	161
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	1 cut(s)	140
MnlI	CCTC	4 cut(s)	145, 176, 179, 182
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	41, 126
MvaI	CCWGG	2 cut(s)	41, 126
MvnI	CGCG	2 cut(s)	98, 350
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	74
PinAI	ACCGGT	1 cut(s)	283
Psp1406I	AACGTT	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	39, 124
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	2 cut(s)	39, 124
PspN4I	GGNNCC	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	121
Sau3AI	GATC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	41, 126
SetI	ASST	8 cut(s)	25, 42, 58, 156, 225, 267, 310, 322
SexAI	ACCWGGT	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	357
SgrAI	CRCCGGYG	1 cut(s)	283
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	39, 124
TaiI	ACGT	2 cut(s)	225, 267
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	279
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	17, 162
XapI	RAATTY	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.