Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Reverse (-)

49570671 .. 49572783

Gene Structure 2113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG354000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCGACGCATTGGGAAAGATGACTGGTCTCTTGGCTTTACTGCTATTTCTGGAACTGAAGAGATTTGCATTGGCGGTCAGCGGTTGATTGCCATTTTCTCTCCGGGACATACAGATGGCCATATGGGACTGCTTCATGCCAGTACTCACTTATTGATTGTAGGTGATCATTGTGTGGGTCAAGGTAGTGCCATACTGGATGTTACTTCAGGGGGAAATATGACTGTAAGTTCATTTGTCCTATTTATATTGTGTCATAGTTATTTCCTATATAAGTTTCCTAGCCTAATTGATGAGTGTCATTGTGGGATTAGACCGGAAAACACATGCCCAATTTGTAGTTACTATATGCATGAAGATTTTTGTTTTTCTCCTCATTTACAGGATTACTTTCAATCAACTTACAAATTTATGGAGATTTCCCCACATGCTTTGATCCCCATGCATGGGAGAGTTAACCTCTGGCCAAAGCACATGCTTAGTGGATATCTCAGGAACCGTAGAGGTAGAGAAAGTTCCATCTTGAAAGCGATAGAAAATGGACCTGAAACATTATTTGATATAGTTGCAAATGTATATTCTGAGGTTGACCGTAGCTTTTGGATTCCTGCTGCATCAAATGTGAGGCTTCACGTGGATCATCTAAGCCAGCAAGATAAGTTGCCAAAGGTAAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

226

Amino Acids

25.47

Weight (kDa)

6.52

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_BLACT	PF17778	184 - 220	1.3e-06	Beta-lactamase associated winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	75, 82
AclWI	GGATC	2 cut(s)	430, 645
AcoI	YGGCCR	2 cut(s)	118, 464
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	2 cut(s)	78, 192
AcvI	CACGTG	1 cut(s)	634
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	446, 447
AgsI	TTSAA	2 cut(s)	395, 526
AluBI	AGCT	1 cut(s)	597
AluI	AGCT	1 cut(s)	597
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	2 cut(s)	430, 645
AoxI	GGCC	2 cut(s)	118, 464
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	542
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	542
BalI	TGGCCA	2 cut(s)	120, 466
BbrPI	CACGTG	1 cut(s)	634
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	2 cut(s)	110, 527
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	282
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	1 cut(s)	497
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	623
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
BpuMI	CCSGG	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	634
BsaI	GGTCTC	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	2 cut(s)	446, 447
Bse1I	ACTGG	3 cut(s)	29, 141, 201
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	446, 447
BseMII	CTCAG	2 cut(s)	505, 573
BseNI	ACTGG	3 cut(s)	29, 141, 201
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	598
BshFI	GGCC	2 cut(s)	120, 466
BsiSI	CCGG	2 cut(s)	104, 317
BslFI	GGGAC	2 cut(s)	120, 141
BslI	CCNNNNNNNGG	2 cut(s)	446, 447
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	120, 141
BsnI	GGCC	2 cut(s)	120, 466
Bso31I	GGTCTC	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	166, 435, 637
BspACI	CCGC	2 cut(s)	75, 82
BspANI	GGCC	2 cut(s)	120, 466
BspCNI	CTCAG	2 cut(s)	504, 574
BspLI	GGNNCC	1 cut(s)	497
BspPI	GGATC	2 cut(s)	430, 645
BspTNI	GGTCTC	1 cut(s)	33
BsrI	ACTGG	3 cut(s)	29, 141, 201
BssMI	GATC	3 cut(s)	166, 435, 637
Bst4CI	ACNGT	3 cut(s)	226, 500, 593
Bst6I	CTCTTC	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	650
BstDEI	CTNAG	4 cut(s)	479, 491, 582, 644
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	3 cut(s)	169, 438, 640
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	3 cut(s)	166, 435, 637
BstNSI	RCATGY	3 cut(s)	330, 431, 478
BstSCI	CCNGG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	598
BsuRI	GGCC	2 cut(s)	120, 466
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	650
Cfr13I	GGNCC	1 cut(s)	542
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	144
CspCI	CAANNNNNGTGG	2 cut(s)	414, 449
CviAII	CATG	7 cut(s)	137, 327, 353, 428, 442, 446, 475
CviJI	RGCY	7 cut(s)	36, 120, 285, 466, 597, 628, 648
CviKI_1	RGCY	7 cut(s)	36, 120, 285, 466, 597, 628, 648
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	4 cut(s)	479, 491, 582, 644
DpnI	GATC	3 cut(s)	168, 437, 639
DpnII	GATC	3 cut(s)	166, 435, 637
EaeI	YGGCCR	2 cut(s)	118, 464
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	2 cut(s)	78, 192
Eco72I	CACGTG	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	488
EcoT22I	ATGCAT	2 cut(s)	354, 447
FaeI	CATG	7 cut(s)	140, 330, 356, 431, 445, 449, 478
FaqI	GGGAC	2 cut(s)	120, 141
FatI	CATG	7 cut(s)	136, 326, 352, 427, 441, 445, 474
FauNDI	CATATG	1 cut(s)	123
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	612
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	1 cut(s)	612
HaeIII	GGCC	2 cut(s)	120, 466
HapII	CCGG	2 cut(s)	104, 317
HgaI	GACGC	1 cut(s)	15
Hin1II	CATG	7 cut(s)	140, 330, 356, 431, 445, 449, 478
HincII	GTYRAC	2 cut(s)	457, 589
HindII	GTYRAC	2 cut(s)	457, 589
HinfI	GANTC	1 cut(s)	604
HpaI	GTTAAC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	104, 317
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	457, 589
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	3 cut(s)	51, 493, 523
Hpy8I	GTNNAC	2 cut(s)	457, 589
Hpy99I	CGWCG	1 cut(s)	9
HpyCH4III	ACNGT	3 cut(s)	226, 500, 593
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	5 cut(s)	69, 352, 445, 569, 614
HpyF3I	CTNAG	4 cut(s)	479, 491, 582, 644
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	7 cut(s)	140, 330, 356, 431, 445, 449, 478
Ksp22I	TGATCA	1 cut(s)	166
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	166, 435, 637
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	1 cut(s)	623
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	2 cut(s)	202, 341
MalI	GATC	3 cut(s)	168, 437, 639
MboI	GATC	3 cut(s)	166, 435, 637
MboII	GAAGA	2 cut(s)	71, 368
MlsI	TGGCCA	2 cut(s)	120, 466
MluCI	AATT	3 cut(s)	288, 333, 407
MluNI	TGGCCA	2 cut(s)	120, 466
MnlI	CCTC	5 cut(s)	384, 470, 497, 577, 618
Mox20I	TGGCCA	2 cut(s)	120, 466
Mph1103I	ATGCAT	2 cut(s)	354, 447
MscI	TGGCCA	2 cut(s)	120, 466
MseI	TTAA	2 cut(s)	456, 679
MslI	CAYNNNNRTG	1 cut(s)	114
Msp20I	TGGCCA	2 cut(s)	120, 466
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	2 cut(s)	104, 317
MspR9I	CCNGG	1 cut(s)	105
NciI	CCSGG	1 cut(s)	105
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	3 cut(s)	166, 435, 637
NlaIII	CATG	7 cut(s)	140, 330, 356, 431, 445, 449, 478
NlaIV	GGNNCC	1 cut(s)	497
NsiI	ATGCAT	2 cut(s)	354, 447
NspI	RCATGY	3 cut(s)	330, 431, 478
PfeI	GAWTC	1 cut(s)	604
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	613
PmaCI	CACGTG	1 cut(s)	634
PmlI	CACGTG	1 cut(s)	634
Ppu21I	YACGTR	1 cut(s)	634
PspCI	CACGTG	1 cut(s)	634
PspN4I	GGNNCC	1 cut(s)	497
PspPI	GGNCC	1 cut(s)	542
PsrI	GAACNNNNNNTAC	2 cut(s)	499, 531
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	456, 679
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	3 cut(s)	166, 435, 637
Sau96I	GGNCC	1 cut(s)	542
ScaI	AGTACT	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	623
SinI	GGWCC	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	3 cut(s)	288, 333, 407
SsiI	CCGC	2 cut(s)	75, 82
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	3 cut(s)	226, 500, 593
TaiI	ACGT	1 cut(s)	636
TasI	AATT	3 cut(s)	288, 333, 407
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	2 cut(s)	456, 679
Tru9I	TTAA	2 cut(s)	456, 679
TseI	GCWGC	1 cut(s)	611
TspDTI	ATGAA	3 cut(s)	125, 222, 369
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	3 cut(s)	330, 431, 478
XspI	CTAG	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	145
Zsp2I	ATGCAT	2 cut(s)	354, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.