Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Forward (+)

69681307 .. 69683342

Gene Structure 2036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21816

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGTGTTCAACTACTGGTTCTGTTGTTTTATTTTACTGCACAATTTTTATCAAGCATTACAGATTCACATCATTTTTTGTGGTCTTATAGAATTAAGGAGTAAAAATTTATTTTCAATTCAGGAGTACGCTCCTGGTGTTGTGCTTGTACCTATGGGAAGCAGGACAGGAAAACCTTTTCGTACAACAAACCTGATTGTTTTTGCACCTAAAAATGTTCCAAATGATTCTGGAAAGAATGGTTTTATCGCGTGTGGAGATGCGTTGATAGTGGATCCTGGGTGTCAGTCTAAATTCCATGAAGAGCTCAGACAAATTGTAGCTGCTTTGCCGAGAAAGTTAATTGTGTTTGTTACTCATCATCATCGCGATCATGTGGATGATGACTGGTCTCTTGGCTTTACTGCTATTTCTGGAACTGAAGAGATTTGCATTGGCGAAGCTCACTTGTGTTTCAGTCAAGGTAGTGCCATACTGGATGTTACTTCCGGGGGAAATATGACTGATTACTTTCAATCAACATACAAATTTATGGAGATTTCCCCACATGCTTTGATCCCCATGCATGGGAGAGTTAACCTCTGGCCAAAGCACATGCTTTGTGGATATCTCAGGAAACGTAGAGGTAGAGAAAGTTCCATCTTGAAAGCGATAGAAAATGGAGCTGAAACATTATTTGATATAGTTGCAAATGTATATTCTGAGGTTGACCGTAGCTTTTGGATTCCTGCTGCATCAAATGTGAGGCTTCACGTGGATCATCTAAGCCAGCAAGATAAGTTGCCAAAGGTAAAGGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

267

Amino Acids

30.14

Weight (kDa)

7.67

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_BLACT	PF17778	224 - 260	1.6e-06	Beta-lactamase associated winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	251, 369
AclWI	GGATC	4 cut(s)	269, 282, 550, 765
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	3 cut(s)	106, 293, 527
AcuI	CTGAAG	1 cut(s)	441
AcvI	CACGTG	1 cut(s)	754
AfaI	GTAC	3 cut(s)	128, 150, 184
AfiI	CCNNNNNNNGG	2 cut(s)	566, 567
AgsI	TTSAA	4 cut(s)	10, 117, 515, 646
AjnI	CCWGG	2 cut(s)	133, 277
AluBI	AGCT	5 cut(s)	307, 323, 443, 665, 717
AluI	AGCT	5 cut(s)	307, 323, 443, 665, 717
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	4 cut(s)	269, 282, 550, 765
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	2 cut(s)	323, 731
ApoI	RAATTY	3 cut(s)	106, 293, 527
AsuC2I	CCSGG	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	586
BamHI	GGATCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	309
BbrPI	CACGTG	1 cut(s)	754
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	310, 718
BccI	CCATC	1 cut(s)	647
BciT130I	CCWGG	2 cut(s)	135, 279
BcnI	CCSGG	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	324, 732
BlsI	GCNGC	2 cut(s)	325, 733
Bme1390I	CCNGG	3 cut(s)	135, 279, 490
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	3 cut(s)	135, 279, 490
BmsI	GCATC	2 cut(s)	250, 743
BplI	GAGNNNNNCTC	2 cut(s)	564, 596
BpuMI	CCSGG	1 cut(s)	490
BsaAI	YACGTR	1 cut(s)	754
BsaBI	GATNNNNATC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	278, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 567
Bse1I	ACTGG	3 cut(s)	20, 392, 480
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	135, 279
BseDI	CCNNGG	2 cut(s)	278, 489
BseGI	GGATG	2 cut(s)	385, 484
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	566, 567
BseMII	CTCAG	3 cut(s)	322, 625, 693
BseNI	ACTGG	3 cut(s)	20, 392, 480
BseXI	GCAGC	2 cut(s)	310, 718
BsgI	GTGCAG	1 cut(s)	23
Bsh1236I	CGCG	2 cut(s)	251, 369
BshFI	GGCC	1 cut(s)	586
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	489
BslI	CCNNNNNNNGG	2 cut(s)	566, 567
BsmAI	GTCTC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	586
Bso31I	GGTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	274, 370, 555, 757
Bsp68I	TCGCGA	1 cut(s)	369
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	3 cut(s)	321, 624, 694
BspFNI	CGCG	2 cut(s)	251, 369
BspHI	TCATGA	1 cut(s)	800
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	4 cut(s)	269, 282, 550, 765
BspQI	GCTCTTC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	396
BsrI	ACTGG	3 cut(s)	20, 392, 480
BssECI	CCNNGG	2 cut(s)	278, 489
BssMI	GATC	4 cut(s)	274, 370, 555, 757
Bst2UI	CCWGG	2 cut(s)	135, 279
Bst4CI	ACNGT	1 cut(s)	713
Bst6I	CTCTTC	2 cut(s)	297, 417
BstBAI	YACGTR	1 cut(s)	754
BstC8I	GCNNGC	1 cut(s)	770
BstDEI	CTNAG	4 cut(s)	308, 611, 702, 764
BstF5I	GGATG	2 cut(s)	385, 484
BstFNI	CGCG	2 cut(s)	251, 369
BstKTI	GATC	4 cut(s)	277, 373, 558, 760
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	4 cut(s)	274, 370, 555, 757
BstNI	CCWGG	2 cut(s)	135, 279
BstNSI	RCATGY	2 cut(s)	551, 598
BstSCI	CCNGG	3 cut(s)	133, 277, 488
BstUI	CGCG	2 cut(s)	251, 369
BstV1I	GCAGC	2 cut(s)	310, 718
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	586
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	385, 484
BtuMI	TCGCGA	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	770
CciI	TCATGA	1 cut(s)	800
Csp6I	GTAC	3 cut(s)	127, 149, 183
CspCI	CAANNNNNGTGG	2 cut(s)	534, 569
CviAII	CATG	7 cut(s)	299, 374, 548, 562, 566, 595, 801
CviJI	RGCY	9 cut(s)	307, 323, 399, 443, 586, 665, 717, 748, 768
CviKI_1	RGCY	9 cut(s)	307, 323, 399, 443, 586, 665, 717, 748, 768
CviQI	GTAC	3 cut(s)	127, 149, 183
DdeI	CTNAG	4 cut(s)	308, 611, 702, 764
DpnI	GATC	4 cut(s)	276, 372, 557, 759
DpnII	GATC	4 cut(s)	274, 370, 555, 757
EaeI	YGGCCR	1 cut(s)	584
Eam1104I	CTCTTC	2 cut(s)	297, 417
EarI	CTCTTC	2 cut(s)	297, 417
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	396
Eco32I	GATATC	1 cut(s)	608
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	441
Eco72I	CACGTG	1 cut(s)	754
EcoICRI	GAGCTC	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	133, 277
EcoRV	GATATC	1 cut(s)	608
EcoT22I	ATGCAT	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	7 cut(s)	302, 377, 551, 565, 569, 598, 804
FatI	CATG	7 cut(s)	298, 373, 547, 561, 565, 594, 800
Fnu4HI	GCNGC	2 cut(s)	324, 732
FokI	GGATG	2 cut(s)	392, 491
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	324, 732
GluI	GCNGC	2 cut(s)	324, 732
HaeIII	GGCC	1 cut(s)	586
HapII	CCGG	1 cut(s)	489
Hin1II	CATG	7 cut(s)	302, 377, 551, 565, 569, 598, 804
HincII	GTYRAC	2 cut(s)	577, 709
HindII	GTYRAC	2 cut(s)	577, 709
HinfI	GANTC	3 cut(s)	64, 227, 724
HpaI	GTTAAC	1 cut(s)	577
HpaII	CCGG	1 cut(s)	489
Hpy166II	GTNNAC	2 cut(s)	577, 709
Hpy188I	TCNGA	2 cut(s)	311, 703
Hpy188III	TCNNGA	7 cut(s)	122, 231, 368, 414, 613, 643, 801
Hpy8I	GTNNAC	2 cut(s)	577, 709
HpyCH4III	ACNGT	1 cut(s)	713
HpyCH4IV	ACGT	2 cut(s)	619, 753
HpyCH4V	TGCA	6 cut(s)	40, 206, 432, 565, 689, 734
HpyF3I	CTNAG	4 cut(s)	308, 611, 702, 764
HpySE526I	ACGT	2 cut(s)	619, 753
Hsp92II	CATG	7 cut(s)	302, 377, 551, 565, 569, 598, 804
KspAI	GTTAAC	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	274, 370, 555, 757
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	136, 662
Lsp1109I	GCAGC	2 cut(s)	310, 718
LweI	GCATC	2 cut(s)	250, 743
MaeII	ACGT	2 cut(s)	619, 753
MaeIII	GTNAC	2 cut(s)	352, 481
MalI	GATC	4 cut(s)	276, 372, 557, 759
MboI	GATC	4 cut(s)	274, 370, 555, 757
MboII	GAAGA	2 cut(s)	314, 434
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	309
MlsI	TGGCCA	1 cut(s)	586
MluCI	AATT	8 cut(s)	43, 92, 106, 117, 293, 315, 342, 527
MluNI	TGGCCA	1 cut(s)	586
MnlI	CCTC	4 cut(s)	590, 617, 697, 738
Mox20I	TGGCCA	1 cut(s)	586
Mph1103I	ATGCAT	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	586
MseI	TTAA	3 cut(s)	95, 341, 576
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	586
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	3 cut(s)	135, 279, 490
MvaI	CCWGG	2 cut(s)	135, 279
MvnI	CGCG	2 cut(s)	251, 369
NciI	CCSGG	1 cut(s)	490
NdeII	GATC	4 cut(s)	274, 370, 555, 757
NlaIII	CATG	7 cut(s)	302, 377, 551, 565, 569, 598, 804
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	357
NruI	TCGCGA	1 cut(s)	369
NsiI	ATGCAT	1 cut(s)	567
NspI	RCATGY	2 cut(s)	551, 598
PagI	TCATGA	1 cut(s)	800
PciSI	GCTCTTC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	64, 227, 724
PkrI	GCNGC	2 cut(s)	325, 733
PmaCI	CACGTG	1 cut(s)	754
PmlI	CACGTG	1 cut(s)	754
Ppu21I	YACGTR	1 cut(s)	754
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	133, 277
PspCI	CACGTG	1 cut(s)	754
PspGI	CCWGG	2 cut(s)	133, 277
PspN4I	GGNNCC	1 cut(s)	276
PsrI	GAACNNNNNNTAC	2 cut(s)	619, 651
PsuI	RGATCY	1 cut(s)	274
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	3 cut(s)	128, 150, 184
RsaNI	GTAC	3 cut(s)	127, 149, 183
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	95, 341, 576
SatI	GCNGC	2 cut(s)	324, 732
Sau3AI	GATC	4 cut(s)	274, 370, 555, 757
ScrFI	CCNGG	3 cut(s)	135, 279, 490
SduI	GDGCHC	1 cut(s)	309
SfaNI	GCATC	2 cut(s)	250, 743
SmiMI	CAYNNNNRTG	1 cut(s)	378
Sse9I	AATT	8 cut(s)	43, 92, 106, 117, 293, 315, 342, 527
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	133, 277, 488
TaaI	ACNGT	1 cut(s)	713
TaiI	ACGT	2 cut(s)	622, 756
TasI	AATT	8 cut(s)	43, 92, 106, 117, 293, 315, 342, 527
TfiI	GAWTC	3 cut(s)	64, 227, 724
Tru1I	TTAA	3 cut(s)	95, 341, 576
Tru9I	TTAA	3 cut(s)	95, 341, 576
TseI	GCWGC	2 cut(s)	323, 731
TspDTI	ATGAA	2 cut(s)	315, 789
XapI	RAATTY	3 cut(s)	106, 293, 527
XceI	RCATGY	2 cut(s)	551, 598
Zsp2I	ATGCAT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.