Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Reverse (-)

49573207 .. 49573563

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG354100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTGTTCAACTACTGGGTCTGTTGTTTTATTTTACTGCACAATTTTTATCAAGCATTACAGATTCACATCTTTTTTTGTGGTCTTATAGAATTAAGGAGTAAAAATTTATTTTCAATTCAGGAGTACCCTCCTGGTGTTGTGCTTGTACCTATGGGAAGCAGGACAGGAAAACCTTTTCGTACAACAAACCTGATTGTTTTTGCACCTAAAAATGTTCCAAATGATTCTGGAAAGAATGGTTTTATCGCGTGTGGAGATGCGTTGATAGTGGATCCTGGGTGTCAGTCTAAATTCCATGAAGAGGTATGGCATGTTAGTTTGCTCTGCTGCGCCTGGAAAATGGTTTATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

118

Amino Acids

13.48

Weight (kDa)

8.19

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	251
AclWI	GGATC	2 cut(s)	269, 282
AcsI	RAATTY	2 cut(s)	106, 293
AfaI	GTAC	3 cut(s)	128, 150, 184
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	10, 117
AjnI	CCWGG	3 cut(s)	133, 277, 335
AlwI	GGATC	2 cut(s)	269, 282
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	2 cut(s)	106, 293
AspLEI	GCGC	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	317
BciT130I	CCWGG	3 cut(s)	135, 279, 337
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bme1390I	CCNGG	3 cut(s)	135, 279, 337
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	3 cut(s)	135, 279, 337
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	3 cut(s)	135, 279, 337
BseDI	CCNNGG	1 cut(s)	278
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	2 cut(s)	269, 282
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	1 cut(s)	274
Bst2UI	CCWGG	3 cut(s)	135, 279, 337
Bst6I	CTCTTC	1 cut(s)	297
BstFNI	CGCG	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstNI	CCWGG	3 cut(s)	135, 279, 337
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	133, 277, 335
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
CfoI	GCGC	1 cut(s)	335
Csp6I	GTAC	3 cut(s)	127, 149, 183
CviAII	CATG	2 cut(s)	299, 314
CviQI	GTAC	3 cut(s)	127, 149, 183
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
EcoRII	CCWGG	3 cut(s)	133, 277, 335
FaeI	CATG	2 cut(s)	302, 317
FaiI	YATR	5 cut(s)	89, 155, 300, 310, 315
FatI	CATG	2 cut(s)	298, 313
Fnu4HI	GCNGC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	331
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	331
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	302, 317
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	2 cut(s)	64, 227
Hpy188III	TCNNGA	2 cut(s)	122, 231
HpyCH4V	TGCA	2 cut(s)	40, 206
Hsp92II	CATG	2 cut(s)	302, 317
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	274
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	250
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	1 cut(s)	314
MflI	RGATCY	1 cut(s)	274
MluCI	AATT	5 cut(s)	43, 92, 106, 117, 293
MnlI	CCTC	2 cut(s)	141, 298
MseI	TTAA	1 cut(s)	95
MspR9I	CCNGG	3 cut(s)	135, 279, 337
MvaI	CCWGG	3 cut(s)	135, 279, 337
MvnI	CGCG	1 cut(s)	251
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	302, 317
NlaIV	GGNNCC	1 cut(s)	276
NspI	RCATGY	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	64, 227
PkrI	GCNGC	1 cut(s)	332
Psp6I	CCWGG	3 cut(s)	133, 277, 335
PspGI	CCWGG	3 cut(s)	133, 277, 335
PspN4I	GGNNCC	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	3 cut(s)	128, 150, 184
RsaNI	GTAC	3 cut(s)	127, 149, 183
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	1 cut(s)	274
ScrFI	CCNGG	3 cut(s)	135, 279, 337
SetI	ASST	5 cut(s)	154, 178, 195, 211, 309
SfaNI	GCATC	1 cut(s)	250
Sse9I	AATT	5 cut(s)	43, 92, 106, 117, 293
StyD4I	CCNGG	3 cut(s)	133, 277, 335
TasI	AATT	5 cut(s)	43, 92, 106, 117, 293
TfiI	GAWTC	2 cut(s)	64, 227
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseI	GCWGC	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	315
XapI	RAATTY	2 cut(s)	106, 293
XceI	RCATGY	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.