Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Reverse (-)

60063601 .. 60065390

Gene Structure 1790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0479000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGCGTGGGTTTTCCATGGCGGAGGAGGGCGATAATAAGATGAAGAAGTTAAAGGTGGAAGAAGAAGAAGAAGAAGGGGAAGACAAGATTGAGCAGCAGCAGCAAGAAGAGGAGGTTGTCATCGTTCAAGGCCCGGGCTTTACGAATCTGGACGATAATCTGATATTCGAGGTGTTTAAGCACGTTGATGCCAGAACACTGGGAATGGCGTCGTGTGTGAGCAAGCAGTGGCACAAGACCGCCCAGGACGAGCGGCTCTGGGAGCTCATCTGCACCCGCCACTGGGCTAACATCGGCTGCGGTAATCAGCAGCTGAGATCTGTCGTCCTCGCCCTCGGTGGCTTCCGGAGGCTCCACTCCCTCTACATCTGGCCTCTCACTAGGCCTTCTCCGTCCTCTTTATCGTCCTTGTCTTCTTCTTCTTCGTCGTCGGCTCCGTCGTCTTCTTCGTCGTCGTGGGCGGCTCCGCTGAAGCCGGCGGTGGCCGCCAAGCCGCACGCTAGGTGGGGGAAGGATGAGGTGAATCTTTCGCTCTCGCTTCTGTCGATTCGGTTTTATGAGAAGATGAATTACAGCAACAGAGGCCCAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

199

Amino Acids

22.32

Weight (kDa)

6.97

Isoelectric Point (pI)

72.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	49 - 89	7.2e-08	F-box domain
F-box-like	PF12937	55 - 93	1.2e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	256
AccIII	TCCGGA	1 cut(s)	348
AcoI	YGGCCR	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	285, 286
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	246, 589
AluBI	AGCT	2 cut(s)	268, 316
AluI	AGCT	2 cut(s)	268, 316
Alw21I	GWGCWC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	136
Aor13HI	TCCGGA	1 cut(s)	348
AoxI	GGCC	5 cut(s)	133, 374, 386, 486, 586
ApeKI	GCWGC	5 cut(s)	97, 100, 103, 300, 313
AspS9I	GGNCC	2 cut(s)	134, 587
AsuC2I	CCSGG	2 cut(s)	137, 138
AsuHPI	GGTGA	1 cut(s)	535
AvaI	CYCGRG	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	270
BarI	GAAGNNNNNNTAC	2 cut(s)	557, 589
BbsI	GAAGAC	3 cut(s)	90, 408, 438
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	5 cut(s)	109, 112, 115, 287, 325
BciT130I	CCWGG	2 cut(s)	248, 591
BcnI	CCSGG	2 cut(s)	137, 138
BfaI	CTAG	2 cut(s)	384, 504
BglII	AGATCT	1 cut(s)	320
BisI	GCNGC	9 cut(s)	98, 101, 104, 257, 301, 314, 465, 489, 497
BlsI	GCNGC	9 cut(s)	99, 102, 105, 258, 302, 315, 466, 490, 498
Bme1390I	CCNGG	4 cut(s)	137, 138, 248, 591
BmeT110I	CYCGRG	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	134, 587
BmiI	GGNNCC	3 cut(s)	356, 438, 468
BmrFI	CCNGG	4 cut(s)	137, 138, 248, 591
BmrI	ACTGGG	2 cut(s)	212, 295
BmsI	GCATC	1 cut(s)	181
BmuI	ACTGGG	2 cut(s)	212, 295
BpiI	GAAGAC	3 cut(s)	90, 408, 438
BpuMI	CCSGG	2 cut(s)	137, 138
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	5 cut(s)	18, 136, 246, 337, 589
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 286
Bse118I	RCCGGY	1 cut(s)	478
Bse1I	ACTGG	2 cut(s)	207, 290
BseAI	TCCGGA	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	248, 591
BseDI	CCNNGG	5 cut(s)	18, 136, 246, 337, 589
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	2 cut(s)	285, 286
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	207, 290
BseRI	GAGGAG	2 cut(s)	41, 128
BseXI	GCAGC	5 cut(s)	109, 112, 115, 287, 325
BsgI	GTGCAG	1 cut(s)	259
BshFI	GGCC	5 cut(s)	135, 376, 388, 488, 588
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	3 cut(s)	137, 349, 479
BslI	CCNNNNNNNGG	2 cut(s)	285, 286
BsnI	GGCC	5 cut(s)	135, 376, 388, 488, 588
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp13I	TCCGGA	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	320
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	5 cut(s)	135, 376, 388, 488, 588
BspCNI	CTCAG	1 cut(s)	309
BspEI	TCCGGA	1 cut(s)	348
BspLI	GGNNCC	3 cut(s)	356, 438, 468
BsrBI	CCGCTC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	207, 290
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	5 cut(s)	18, 136, 246, 337, 589
BssMI	GATC	1 cut(s)	320
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	248, 591
Bst6I	CTCTTC	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	212
BstC8I	GCNNGC	3 cut(s)	227, 480, 501
BstDEI	CTNAG	1 cut(s)	317
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	1 cut(s)	323
BstMBI	GATC	1 cut(s)	320
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 265, 488, 585
BstNI	CCWGG	2 cut(s)	248, 591
BstSCI	CCNGG	4 cut(s)	135, 136, 246, 589
BstV1I	GCAGC	5 cut(s)	109, 112, 115, 287, 325
BstV2I	GAAGAC	3 cut(s)	90, 408, 438
BstX2I	RGATCY	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	5 cut(s)	135, 376, 388, 488, 588
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	3 cut(s)	200, 236, 283
Cac8I	GCNNGC	3 cut(s)	227, 480, 501
CaiI	CAGNNNCTG	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	478
Cfr13I	GGNCC	2 cut(s)	134, 587
Cfr9I	CCCGGG	1 cut(s)	136
CseI	GACGC	1 cut(s)	201
CviAII	CATG	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	322
DpnII	GATC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	18
Eco147I	AGGCCT	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	246, 589
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	22
FaiI	YATR	2 cut(s)	20, 561
FatI	CATG	1 cut(s)	18
FauI	CCCGC	1 cut(s)	287
Fnu4HI	GCNGC	9 cut(s)	98, 101, 104, 257, 301, 314, 465, 489, 497
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	9 cut(s)	98, 101, 104, 257, 301, 314, 465, 489, 497
FspBI	CTAG	2 cut(s)	384, 504
GluI	GCNGC	9 cut(s)	98, 101, 104, 257, 301, 314, 465, 489, 497
HaeIII	GGCC	5 cut(s)	135, 376, 388, 488, 588
HapII	CCGG	3 cut(s)	137, 349, 479
HgaI	GACGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	22
HinfI	GANTC	3 cut(s)	148, 526, 550
HpaII	CCGG	3 cut(s)	137, 349, 479
HphI	GGTGA	1 cut(s)	535
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	152, 349
Hpy99I	CGWCG	6 cut(s)	217, 433, 436, 445, 457, 460
HpyAV	CCTTC	3 cut(s)	71, 399, 508
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 265, 488, 585
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	22
Kpn2I	TCCGGA	1 cut(s)	348
KroI	GCCGGC	1 cut(s)	478
KroNI	GCCGGC	1 cut(s)	480
Kzo9I	GATC	1 cut(s)	320
LmnI	GCTCC	4 cut(s)	265, 360, 442, 472
Lsp1109I	GCAGC	5 cut(s)	109, 112, 115, 287, 325
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	384, 504
MaeII	ACGT	1 cut(s)	186
MalI	GATC	1 cut(s)	322
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	1 cut(s)	320
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	1 cut(s)	571
MroI	TCCGGA	1 cut(s)	348
MroNI	GCCGGC	1 cut(s)	478
MseI	TTAA	2 cut(s)	53, 180
MslI	CAYNNNNRTG	1 cut(s)	189
MspA1I	CMGCKG	2 cut(s)	316, 472
MspI	CCGG	3 cut(s)	137, 349, 479
MspR9I	CCNGG	4 cut(s)	137, 138, 248, 591
MvaI	CCWGG	2 cut(s)	248, 591
MwoI	GCNNNNNNNGC	4 cut(s)	103, 265, 488, 585
NaeI	GCCGGC	1 cut(s)	480
NciI	CCSGG	2 cut(s)	137, 138
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	1 cut(s)	320
NgoMIV	GCCGGC	1 cut(s)	478
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	3 cut(s)	356, 438, 468
PceI	AGGCCT	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	4 cut(s)	437, 440, 449, 545
PdiI	GCCGGC	1 cut(s)	480
PfeI	GAWTC	3 cut(s)	148, 526, 550
PkrI	GCNGC	9 cut(s)	99, 102, 105, 258, 302, 315, 466, 490, 498
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	246, 589
PspGI	CCWGG	2 cut(s)	246, 589
PspN4I	GGNNCC	3 cut(s)	356, 438, 468
PspPI	GGNCC	2 cut(s)	134, 587
PstNI	CAGNNNCTG	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	53, 180
SatI	GCNGC	9 cut(s)	98, 101, 104, 257, 301, 314, 465, 489, 497
Sau3AI	GATC	1 cut(s)	320
Sau96I	GGNCC	2 cut(s)	134, 587
ScrFI	CCNGG	4 cut(s)	137, 138, 248, 591
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	8 cut(s)	60, 120, 177, 189, 270, 318, 509, 525
SfaNI	GCATC	1 cut(s)	181
SmaI	CCCGGG	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	189
SrfI	GCCCGGGC	1 cut(s)	138
Sse9I	AATT	1 cut(s)	571
SseBI	AGGCCT	1 cut(s)	388
SspMI	CTAG	2 cut(s)	384, 504
SstI	GAGCTC	1 cut(s)	270
StuI	AGGCCT	1 cut(s)	388
StyD4I	CCNGG	4 cut(s)	135, 136, 246, 589
StyI	CCWWGG	1 cut(s)	18
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	171, 548
TasI	AATT	1 cut(s)	571
TauI	GCSGC	4 cut(s)	259, 467, 491, 499
TfiI	GAWTC	3 cut(s)	148, 526, 550
Tru1I	TTAA	2 cut(s)	53, 180
Tru9I	TTAA	2 cut(s)	53, 180
TscAI	CASTG	3 cut(s)	207, 236, 290
TseI	GCWGC	5 cut(s)	97, 100, 103, 300, 313
TspDTI	ATGAA	3 cut(s)	17, 59, 584
TspGWI	ACGGA	2 cut(s)	384, 429
TspMI	CCCGGG	1 cut(s)	136
TspRI	CASTG	3 cut(s)	207, 236, 290
XmaI	CCCGGG	1 cut(s)	136
XspI	CTAG	2 cut(s)	384, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.