Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026857.1

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 583

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026857.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ctgattgtttttgcacctaaaaatgttccaaatgattctggaaagaatggttttatcgcgtggggagatgcgttgatagtggatcctgggtgtcagtctaaattccatgaagagctcagacaaattgtagctgctttgccgagaaagttaattgtgtttgttactcatcatcatcgcgatcatgtggatggtctttcagttattcaacgttgcaatcctgaggctacattattagcacatgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

81

Amino Acids

9.0

Weight (kDa)

6.64

Isoelectric Point (pI)

18.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	59, 177
AclI	AACGTT	1 cut(s)	208
AclWI	GGATC	2 cut(s)	77, 90
AcsI	RAATTY	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	2 cut(s)	115, 131
AluI	AGCT	2 cut(s)	115, 131
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	77, 90
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	101
AxyI	CCTNAGG	1 cut(s)	219
BamHI	GGATCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	87
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	86
Bse21I	CCTNAGG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	130, 210
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	2 cut(s)	59, 177
BsiHKAI	GWGCWC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	82, 178
Bsp68I	TCGCGA	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	129, 211
BspFNI	CGCG	2 cut(s)	59, 177
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	77, 90
BspQI	GCTCTTC	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	2 cut(s)	82, 178
Bst2UI	CCWGG	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	116, 219
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	2 cut(s)	59, 177
BstKTI	GATC	2 cut(s)	85, 181
BstMBI	GATC	2 cut(s)	82, 178
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstUI	CGCG	2 cut(s)	59, 177
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
Bsu36I	CCTNAGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	193
BtuMI	TCGCGA	1 cut(s)	177
CviAII	CATG	3 cut(s)	107, 182, 239
CviJI	RGCY	3 cut(s)	115, 131, 224
CviKI_1	RGCY	3 cut(s)	115, 131, 224
DdeI	CTNAG	2 cut(s)	116, 219
DpnI	GATC	2 cut(s)	84, 180
DpnII	GATC	2 cut(s)	82, 178
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	115
Eco81I	CCTNAGG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	3 cut(s)	110, 185, 242
FaiI	YATR	3 cut(s)	108, 183, 240
FatI	CATG	3 cut(s)	106, 181, 238
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	110, 185, 242
HinfI	GANTC	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	3 cut(s)	39, 176, 218
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	14, 213
HpyF3I	CTNAG	2 cut(s)	116, 219
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	3 cut(s)	110, 185, 242
Kzo9I	GATC	2 cut(s)	82, 178
LguI	GCTCTTC	1 cut(s)	105
LpnPI	CCDG	4 cut(s)	24, 72, 99, 231
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	2 cut(s)	84, 180
MboI	GATC	2 cut(s)	82, 178
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	3 cut(s)	101, 123, 150
MnlI	CCTC	1 cut(s)	214
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	2 cut(s)	59, 177
NdeII	GATC	2 cut(s)	82, 178
NlaIII	CATG	3 cut(s)	110, 185, 242
NlaIV	GGNNCC	1 cut(s)	84
NmeAIII	GCCGAG	1 cut(s)	165
NruI	TCGCGA	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	133
Psp124BI	GAGCTC	1 cut(s)	117
Psp1406I	AACGTT	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	82
RruI	TCGCGA	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	82, 178
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	4 cut(s)	19, 117, 133, 211
SfaNI	GCATC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	3 cut(s)	101, 123, 150
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	85
TaiI	ACGT	1 cut(s)	211
TasI	AATT	3 cut(s)	101, 123, 150
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	123
XapI	RAATTY	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.