Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017904.1

Orthogroup ID

OG0002985

Physical Location & Seq

Genomic Coordinates Reverse (-)

1746 .. 2292

Gene Structure 547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017904.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgcaccacaagctcgccgtgattctcgatcaccctcaaaacgacgccgaatttctcctcgtgcagcagacgcgccctcccaaattcgacgacgatgagtacgactcgttcgtcgattccgacctctgggacttaccctccgcgcaattgaaccttttagaaggtcaatccgagtcctcagtcgccgttcaaggcgcagagtcgtggtcggagaagatagagttgacgacatttgacctggattcggctctcaattcgattttggaacaagcagggtttaaggcagctgatgctggagactggaagctgtggaagtatgttgaggaagctcagtttgggcctgggccgccaatcaattcggtttttgttaggggaaaattggtgaacgcagatcaaaccttacaaggtttgcttgtatcactctcactccagcattataaatattttgtttcgattttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

153

Amino Acids

17.17

Weight (kDa)

4.37

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25375
fragaria_vesca	FvH4_4g26975 FvH4_4g26975 FvH4_4g26975 FvH4_4g26975
malus_domestica	MD13G1039000.v1.1 MD16G1039700.v1.1
prunus_persica	Prupe.1G314400_v2.0.a1 Prupe.1G314400_v2.0.a1
pyrus_communis	pycom16g03450
rosa_chinensis	RchiOBHm_Chr2g0108931 RchiOBHm_Chr4g0434781 RchiOBHm_Chr5g0042931 RchiOBHm_Chr6g0261541 RchiOBHm_Chr7g0243441
rosa_laevigata	RLG00000006650
rosa_multiflora	Rmu_sc0007829.1_g000001 Rmu_sc0017904.1_g000001 Rmu_sc0017904.1_g000002 Rmu_sc0026857.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312600 Rroxscaffold_5G00375980
rosa_rugosa	Rorug02G0079600 Rorug04G0278300 Rorug06G0479000
rosa_samantha	Rh2AG012800 Rh2BG218400 Rh2CG210400 Rh2DG354000 Rh2DG354100 Rh4AG334700 Rh4BG343300 Rh4CG357700 Rh4DG337000 Rh7BG078500
rosa_wichuraiana	Rw1G015910 Rw4G029190 Rw7G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AasI	GACNNNNNNGTC	1 cut(s)	110
AccII	CGCG	2 cut(s)	73, 143
AciI	CCGC	2 cut(s)	141, 347
AcsI	RAATTY	2 cut(s)	50, 83
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	126, 244
AgsI	TTSAA	2 cut(s)	151, 191
AjnI	CCWGG	2 cut(s)	237, 340
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	4 cut(s)	13, 287, 307, 329
AluI	AGCT	4 cut(s)	13, 287, 307, 329
Alw26I	GTCTC	1 cut(s)	291
AoxI	GGCC	2 cut(s)	338, 344
ApeKI	GCWGC	2 cut(s)	64, 284
ApoI	RAATTY	2 cut(s)	50, 83
AspLEI	GCGC	3 cut(s)	75, 145, 197
AspS9I	GGNCC	2 cut(s)	338, 344
AsuHPI	GGTGA	2 cut(s)	23, 394
BauI	CACGAG	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	76, 296
BceAI	ACGGC	2 cut(s)	2, 170
BciT130I	CCWGG	2 cut(s)	239, 342
BcoDI	GTCTC	1 cut(s)	291
BisI	GCNGC	3 cut(s)	65, 285, 347
BlsI	GCNGC	3 cut(s)	66, 286, 348
Bme1390I	CCNGG	2 cut(s)	239, 342
BmgT120I	GGNCC	2 cut(s)	338, 344
BmrFI	CCNGG	2 cut(s)	239, 342
BmsI	GCATC	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	2 cut(s)	315, 413
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	341
BsaXI	ACNNNNNCTCC	6 cut(s)	61, 91, 122, 152, 411, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 244
Bse1I	ACTGG	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	239, 342
BseDI	CCNNGG	1 cut(s)	341
BseLI	CCNNNNNNNGG	2 cut(s)	126, 244
BseMII	CTCAG	2 cut(s)	192, 344
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	76, 296
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	2 cut(s)	73, 143
BshFI	GGCC	2 cut(s)	340, 346
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	126, 244
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	340, 346
Bsp143I	GATC	2 cut(s)	28, 391
BspACI	CCGC	2 cut(s)	141, 347
BspANI	GGCC	2 cut(s)	340, 346
BspCNI	CTCAG	2 cut(s)	191, 343
BspFNI	CGCG	2 cut(s)	73, 143
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	2 cut(s)	28, 391
BssNI	GRCGYC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	239, 342
BstACI	GRCGYC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	178, 330
BstFNI	CGCG	2 cut(s)	73, 143
BstHHI	GCGC	3 cut(s)	75, 145, 197
BstKTI	GATC	2 cut(s)	31, 394
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	2 cut(s)	28, 391
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 70, 290, 346
BstNI	CCWGG	2 cut(s)	239, 342
BstSCI	CCNGG	2 cut(s)	237, 340
BstUI	CGCG	2 cut(s)	73, 143
BstV1I	GCAGC	2 cut(s)	76, 296
BsuRI	GGCC	2 cut(s)	340, 346
Cac8I	GCNNGC	1 cut(s)	15
CfoI	GCGC	3 cut(s)	75, 145, 197
Cfr13I	GGNCC	2 cut(s)	338, 344
CseI	GACGC	2 cut(s)	53, 79
Csp6I	GTAC	1 cut(s)	100
CviJI	RGCY	7 cut(s)	13, 248, 287, 307, 329, 340, 346
CviKI_1	RGCY	7 cut(s)	13, 248, 287, 307, 329, 340, 346
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	178, 330
DpnI	GATC	2 cut(s)	30, 393
DpnII	GATC	2 cut(s)	28, 391
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	237, 340
FaiI	YATR	2 cut(s)	318, 438
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	1 cut(s)	143
Fnu4HI	GCNGC	3 cut(s)	65, 285, 347
Fsp4HI	GCNGC	3 cut(s)	65, 285, 347
GlaI	GCGC	3 cut(s)	74, 144, 196
GluI	GCNGC	3 cut(s)	65, 285, 347
GsuI	CTGGAG	2 cut(s)	315, 413
HaeIII	GGCC	2 cut(s)	340, 346
HgaI	GACGC	2 cut(s)	53, 79
HhaI	GCGC	3 cut(s)	75, 145, 197
Hin1I	GRCGYC	1 cut(s)	45
Hin6I	GCGC	3 cut(s)	73, 143, 195
HinP1I	GCGC	3 cut(s)	73, 143, 195
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	6 cut(s)	22, 104, 116, 173, 200, 242
HphI	GGTGA	2 cut(s)	23, 394
Hpy166II	GTNNAC	2 cut(s)	225, 385
Hpy188I	TCNGA	3 cut(s)	121, 172, 211
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	2 cut(s)	225, 385
Hpy99I	CGWCG	4 cut(s)	47, 92, 95, 116
HpyAV	CCTTC	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	4, 64
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 70, 290, 346
HpyF3I	CTNAG	2 cut(s)	178, 330
Hsp92I	GRCGYC	1 cut(s)	45
HspAI	GCGC	3 cut(s)	73, 143, 195
Kzo9I	GATC	2 cut(s)	28, 391
LpnPI	CCDG	9 cut(s)	112, 224, 251, 258, 279, 286, 327, 354, 443
Lsp1109I	GCAGC	2 cut(s)	76, 296
LweI	GCATC	1 cut(s)	280
MalI	GATC	2 cut(s)	30, 393
MboI	GATC	2 cut(s)	28, 391
MboII	GAAGA	1 cut(s)	226
MfeI	CAATTG	1 cut(s)	146
MluCI	AATT	6 cut(s)	50, 83, 146, 253, 355, 377
MlyI	GAGTC	3 cut(s)	98, 182, 209
MmeI	TCCRAC	2 cut(s)	144, 189
MnlI	CCTC	7 cut(s)	45, 68, 87, 134, 148, 187, 316
MseI	TTAA	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	239, 342
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	2 cut(s)	239, 342
MvnI	CGCG	2 cut(s)	73, 143
MwoI	GCNNNNNNNGC	4 cut(s)	10, 70, 290, 346
NdeII	GATC	2 cut(s)	28, 391
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 108, 117
PfeI	GAWTC	3 cut(s)	22, 116, 242
PkrI	GCNGC	3 cut(s)	66, 286, 348
PleI	GAGTC	3 cut(s)	98, 181, 208
PpsI	GAGTC	3 cut(s)	98, 181, 208
PsiI	TTATAA	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	237, 340
PspGI	CCWGG	2 cut(s)	237, 340
PspPI	GGNCC	2 cut(s)	338, 344
PsrI	GAACNNNNNNTAC	2 cut(s)	92, 124
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	3 cut(s)	65, 285, 347
Sau3AI	GATC	2 cut(s)	28, 391
Sau96I	GGNCC	2 cut(s)	338, 344
SchI	GAGTC	3 cut(s)	98, 182, 209
ScrFI	CCNGG	2 cut(s)	239, 342
SfaNI	GCATC	1 cut(s)	280
Sse9I	AATT	6 cut(s)	50, 83, 146, 253, 355, 377
SsiI	CCGC	2 cut(s)	141, 347
SspI	AATATT	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	237, 340
TaqI	TCGA	5 cut(s)	27, 87, 114, 257, 452
TasI	AATT	6 cut(s)	50, 83, 146, 253, 355, 377
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	3 cut(s)	22, 116, 242
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseI	GCWGC	2 cut(s)	64, 284
XapI	RAATTY	2 cut(s)	50, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.