RLG00000006650
ERF Family

Metallo-beta-lactamase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
9349574 .. 9354467
4894 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006650

Sequence Viewer

Length: 1392 bp
ATGGCAATGCACCACAAGCTCGCCGTGATTCTCGATCACCCTCAAAACGACGCCGAATTTCTCCTCGTGAAGCAGACGCGCCCTCCCAAATTCGACGACGATGAGTACGACTCGTTCGTCGATTCCGACCTCTGGGACTTGCCCTCCGCGCAATTGAACCTTCTAGAAGGTCAATCCGAGTCCTCAGTCGCCGTTCGAGGCGCTGAGTCGTGGTCGGAGAAGATAGAGTTGACCAAATTTGACCTGGATTCGGCTCTCAATTCGATTTTGGAACAAGTATGGTTTAAGGCAGCTGATGCTGGAGACTGGAAGCTGTGGAAGTATGTTGAGGAAGCTCAGTTTGGGCCTGGGCCGCCAATCAATTCGGTTTTTGTTAGGGGAAAATTGGTGAATGCAGATCAGACTTTACAAGGTTTGCTTATATCACTCTCACTCCAGCATTATAAATATTTTCGGTGGTTTTATGTCTGGAAGATTAGGCAAGAGTACCCTCCTGGTGTTGTGCTTGTACCTATGGGAAGCAGGACAGGAAAACCTTTTCGTACAACAAACCTGATTGTTTTTGCACCTAAAAATGTTCCAGATGATTCTGGAAAGAATGGTTTTATCGCGTGTGGAGATGCGTTGATAGTCGATCCTGGGTGTCTTTCAGTTATTCAACGTTGCAACCCTGAGGCTACATTATTAGCACATGAAAATACCATGCGACGCATTGGGAAAGATGACTGGTCTCTTGGCTTTACTGCTATTTCTGGAACTGAAGAGATTTGCATTGGCGGTCAGCGGTTGATTGCCATTTTCTCTCCGGGACATACAGATGGCCATATGGGACTGCTTCATGCCAGTACTCACTCATTGATTGTAGGTGATCATTGTGTGGGTCAAGGTAGTGCTATACTGGATGTTACTTCCGGGGGAAATATGACTGATTACTTTCAATCAACGTACAAATTTATGGAGATTTCCCCACATGCTTTGATCCCCATGCATGGGAGAGTTAACCTATGGCCAAAGCACATGCTTTGTGGATATCTCAGGAACCGTAGAGGTAGAGAAAGTTCCATCTTGAAAGCGATAGAAAATGGAGCTGAAACATTATTTGATATAGTTGCAAATGTATATTCTGAGGTTGACCGTAGCTTTTGGATTCCTGCTGCATCAAATGTGAGGCTTCACGTGGATCATCTAAGCCAGCAAGATAAGTTGCCAAAGGCATTTTCAATTCAGAAGTTCCAGAAAACTTGTAGACTGCATTTCTTCTCTCGATGGATGTGGGCTTACCTCATTAACGGTGTCCTCGGAAATTGTTCAAGGCCAAGAATATCTCATCTTCTTGTTGCTGGTGTTGTTGCTAGCTCTGCTGTGTTGTACATGTTTAAAAGACGGGATTAG

Protein Analysis

464

Amino Acids

52.01

Weight (kDa)

6.79

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_BLACT PF17778 365 - 401 4e-06 Beta-lactamase associated winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AasI GACNNNNNNGTC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 1246
AccII CGCG 3 cut(s) 79, 149, 611
AciI CCGC 4 cut(s) 147, 353, 777, 784
AclI AACGTT 1 cut(s) 661
AclWI GGATC 3 cut(s) 629, 973, 1188
AcoI YGGCCR 2 cut(s) 820, 1007
AcsI RAATTY 4 cut(s) 56, 89, 236, 950
AcuI CTGAAG 1 cut(s) 780
AcvI CACGTG 1 cut(s) 1177
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 7 cut(s) 107, 488, 510, 544, 847, 947, 1370
AfiI CCNNNNNNNGG 4 cut(s) 132, 250, 989, 990
AflIII ACRYGT 1 cut(s) 1371
AgsI TTSAA 6 cut(s) 157, 659, 938, 1069, 1221, 1311
AjnI CCWGG 4 cut(s) 243, 346, 493, 637
AjuI GAANNNNNNNTTGG 4 cut(s) 324, 356, 1201, 1233
AluBI AGCT 7 cut(s) 19, 293, 313, 335, 1088, 1140, 1356
AluI AGCT 7 cut(s) 19, 293, 313, 335, 1088, 1140, 1356
Alw26I GTCTC 2 cut(s) 297, 735
AlwI GGATC 3 cut(s) 629, 973, 1188
AoxI GGCC 5 cut(s) 344, 350, 820, 1007, 1313
ApeKI GCWGC 2 cut(s) 290, 1154
ApoI RAATTY 4 cut(s) 56, 89, 236, 950
Asp700I GAANNNNTTC 1 cut(s) 1306
AspLEI GCGC 3 cut(s) 81, 151, 203
AspS9I GGNCC 2 cut(s) 344, 350
AsuC2I CCSGG 2 cut(s) 807, 913
AsuHPI GGTGA 3 cut(s) 29, 400, 878
AsuNHI GCTAGC 1 cut(s) 1352
AxyI CCTNAGG 1 cut(s) 672
BalI TGGCCA 2 cut(s) 822, 1009
BauI CACGAG 1 cut(s) 65
BbrPI CACGTG 1 cut(s) 1177
BbvI GCAGC 2 cut(s) 302, 1141
BccI CCATC 3 cut(s) 812, 1070, 1260
BceAI ACGGC 2 cut(s) 8, 176
BciT130I CCWGG 4 cut(s) 245, 348, 495, 639
BclI TGATCA 1 cut(s) 868
BcnI CCSGG 2 cut(s) 807, 913
BcoDI GTCTC 2 cut(s) 297, 735
BfaI CTAG 2 cut(s) 164, 1353
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 3 cut(s) 291, 353, 1155
BlsI GCNGC 3 cut(s) 292, 354, 1156
BmcAI AGTACT 1 cut(s) 847
Bme1390I CCNGG 6 cut(s) 245, 348, 495, 639, 807, 913
BmgT120I GGNCC 2 cut(s) 344, 350
BmiI GGNNCC 1 cut(s) 1040
BmrFI CCNGG 6 cut(s) 245, 348, 495, 639, 807, 913
BmsI GCATC 3 cut(s) 286, 610, 1166
BmtI GCTAGC 1 cut(s) 1356
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 2 cut(s) 321, 419
BpuMI CCSGG 2 cut(s) 807, 913
BsaAI YACGTR 1 cut(s) 1177
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 735
BsaJI CCNNGG 4 cut(s) 347, 638, 912, 1297
BsaXI ACNNNNNCTCC 6 cut(s) 67, 97, 128, 158, 417, 447
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 250, 989, 990
Bse1I ACTGG 4 cut(s) 311, 731, 843, 903
Bse21I CCTNAGG 1 cut(s) 672
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 4 cut(s) 245, 348, 495, 639
BseDI CCNNGG 4 cut(s) 347, 638, 912, 1297
BseGI GGATG 2 cut(s) 907, 1275
BseLI CCNNNNNNNGG 4 cut(s) 132, 250, 989, 990
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 6 cut(s) 195, 198, 350, 663, 1048, 1116
BseNI ACTGG 4 cut(s) 311, 731, 843, 903
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 302, 1141
Bsh1236I CGCG 3 cut(s) 79, 149, 611
BshFI GGCC 5 cut(s) 346, 352, 822, 1009, 1315
BsiSI CCGG 2 cut(s) 806, 912
BslFI GGGAC 3 cut(s) 149, 822, 843
BslI CCNNNNNNNGG 4 cut(s) 132, 250, 989, 990
BsmAI GTCTC 2 cut(s) 297, 735
BsmFI GGGAC 3 cut(s) 149, 822, 843
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 5 cut(s) 346, 352, 822, 1009, 1315
Bso31I GGTCTC 1 cut(s) 735
Bsp1407I TGTACA 1 cut(s) 1368
Bsp143I GATC 6 cut(s) 34, 397, 634, 868, 978, 1180
BspACI CCGC 4 cut(s) 147, 353, 777, 784
BspANI GGCC 5 cut(s) 346, 352, 822, 1009, 1315
BspCNI CTCAG 6 cut(s) 196, 197, 349, 664, 1047, 1117
BspFNI CGCG 3 cut(s) 79, 149, 611
BspLI GGNNCC 1 cut(s) 1040
BspOI GCTAGC 1 cut(s) 1356
BspPI GGATC 3 cut(s) 629, 973, 1188
BspTNI GGTCTC 1 cut(s) 735
BsrDI GCAATG 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 1368
BsrI ACTGG 4 cut(s) 311, 731, 843, 903
BssECI CCNNGG 4 cut(s) 347, 638, 912, 1297
BssMI GATC 6 cut(s) 34, 397, 634, 868, 978, 1180
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 4 cut(s) 245, 348, 495, 639
Bst4CI ACNGT 3 cut(s) 1043, 1136, 1292
Bst6I CTCTTC 1 cut(s) 756
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 296
BstAUI TGTACA 1 cut(s) 1368
BstBAI YACGTR 1 cut(s) 1177
BstC8I GCNNGC 3 cut(s) 21, 1193, 1354
BstDEI CTNAG 7 cut(s) 184, 204, 336, 672, 1034, 1125, 1187
BstF5I GGATG 2 cut(s) 907, 1275
BstFNI CGCG 3 cut(s) 79, 149, 611
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 3 cut(s) 81, 151, 203
BstKTI GATC 6 cut(s) 37, 400, 637, 871, 981, 1183
BstMAI GTCTC 2 cut(s) 297, 735
BstMBI GATC 6 cut(s) 34, 397, 634, 868, 978, 1180
BstMWI GCNNNNNNNGC 5 cut(s) 16, 148, 296, 352, 1358
BstNI CCWGG 4 cut(s) 245, 348, 495, 639
BstNSI RCATGY 3 cut(s) 974, 1021, 1375
BstSCI CCNGG 6 cut(s) 243, 346, 493, 637, 805, 911
BstUI CGCG 3 cut(s) 79, 149, 611
BstV1I GCAGC 2 cut(s) 302, 1141
Bsu36I CCTNAGG 1 cut(s) 672
BsuRI GGCC 5 cut(s) 346, 352, 822, 1009, 1315
BtsCI GGATG 2 cut(s) 907, 1275
Cac8I GCNNGC 3 cut(s) 21, 1193, 1354
CfoI GCGC 3 cut(s) 81, 151, 203
Cfr13I GGNCC 2 cut(s) 344, 350
CseI GACGC 3 cut(s) 59, 85, 717
Csp6I GTAC 7 cut(s) 106, 487, 509, 543, 846, 946, 1369
CspCI CAANNNNNGTGG 2 cut(s) 957, 992
CviAII CATG 8 cut(s) 692, 703, 839, 971, 985, 989, 1018, 1372
CviQI GTAC 7 cut(s) 106, 487, 509, 543, 846, 946, 1369
DdeI CTNAG 7 cut(s) 184, 204, 336, 672, 1034, 1125, 1187
DpnI GATC 6 cut(s) 36, 399, 636, 870, 980, 1182
DpnII GATC 6 cut(s) 34, 397, 634, 868, 978, 1180
DraI TTTAAA 1 cut(s) 1378
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 2 cut(s) 820, 1007
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
Eco31I GGTCTC 1 cut(s) 735
Eco32I GATATC 1 cut(s) 1031
Eco57I CTGAAG 1 cut(s) 780
Eco72I CACGTG 1 cut(s) 1177
Eco81I CCTNAGG 1 cut(s) 672
EcoRII CCWGG 4 cut(s) 243, 346, 493, 637
EcoRV GATATC 1 cut(s) 1031
EcoT22I ATGCAT 1 cut(s) 990
FaeI CATG 8 cut(s) 695, 706, 842, 974, 988, 992, 1021, 1375
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FaqI GGGAC 3 cut(s) 149, 822, 843
FatI CATG 8 cut(s) 691, 702, 838, 970, 984, 988, 1017, 1371
FauNDI CATATG 1 cut(s) 825
FbaI TGATCA 1 cut(s) 868
FblI GTMKAC 1 cut(s) 1246
Fnu4HI GCNGC 3 cut(s) 291, 353, 1155
FokI GGATG 2 cut(s) 914, 1282
Fsp4HI GCNGC 3 cut(s) 291, 353, 1155
FspBI CTAG 2 cut(s) 164, 1353
GlaI GCGC 3 cut(s) 80, 150, 202
GluI GCNGC 3 cut(s) 291, 353, 1155
GsuI CTGGAG 2 cut(s) 321, 419
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 5 cut(s) 346, 352, 822, 1009, 1315
HapII CCGG 2 cut(s) 806, 912
HgaI GACGC 3 cut(s) 59, 85, 717
HhaI GCGC 3 cut(s) 81, 151, 203
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 8 cut(s) 695, 706, 842, 974, 988, 992, 1021, 1375
Hin6I GCGC 3 cut(s) 79, 149, 201
HinP1I GCGC 3 cut(s) 79, 149, 201
HincII GTYRAC 3 cut(s) 231, 1000, 1132
HindII GTYRAC 3 cut(s) 231, 1000, 1132
HinfI GANTC 8 cut(s) 28, 110, 122, 179, 206, 248, 587, 1147
HpaI GTTAAC 1 cut(s) 1000
HpaII CCGG 2 cut(s) 806, 912
HphI GGTGA 3 cut(s) 29, 400, 878
Hpy166II GTNNAC 4 cut(s) 231, 1000, 1132, 1247
Hpy188I TCNGA 7 cut(s) 127, 178, 217, 402, 1126, 1227, 1301
Hpy8I GTNNAC 4 cut(s) 231, 1000, 1132, 1247
Hpy99I CGWCG 5 cut(s) 53, 98, 101, 122, 711
HpyAV CCTTC 2 cut(s) 161, 170
HpyCH4III ACNGT 3 cut(s) 1043, 1136, 1292
HpyCH4IV ACGT 3 cut(s) 661, 944, 1176
HpyCH4V TGCA 9 cut(s) 10, 395, 566, 666, 771, 988, 1112, 1157, 1252
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 148, 296, 352, 1358
HpyF3I CTNAG 7 cut(s) 184, 204, 336, 672, 1034, 1125, 1187
HpySE526I ACGT 3 cut(s) 661, 944, 1176
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 8 cut(s) 695, 706, 842, 974, 988, 992, 1021, 1375
HspAI GCGC 3 cut(s) 79, 149, 201
Ksp22I TGATCA 1 cut(s) 868
KspAI GTTAAC 1 cut(s) 1000
Kzo9I GATC 6 cut(s) 34, 397, 634, 868, 978, 1180
LmnI GCTCC 1 cut(s) 1085
Lsp1109I GCAGC 2 cut(s) 302, 1141
LweI GCATC 3 cut(s) 286, 610, 1166
MaeI CTAG 2 cut(s) 164, 1353
MaeII ACGT 3 cut(s) 661, 944, 1176
MaeIII GTNAC 1 cut(s) 904
MalI GATC 6 cut(s) 36, 399, 636, 870, 980, 1182
MboI GATC 6 cut(s) 34, 397, 634, 868, 978, 1180
MboII GAAGA 5 cut(s) 232, 484, 773, 1249, 1322
MfeI CAATTG 1 cut(s) 152
MlsI TGGCCA 2 cut(s) 822, 1009
MluNI TGGCCA 2 cut(s) 822, 1009
MlyI GAGTC 3 cut(s) 104, 188, 215
MmeI TCCRAC 2 cut(s) 150, 195
Mox20I TGGCCA 2 cut(s) 822, 1009
Mph1103I ATGCAT 1 cut(s) 990
MroXI GAANNNNTTC 1 cut(s) 1306
MscI TGGCCA 2 cut(s) 822, 1009
MseI TTAA 4 cut(s) 285, 999, 1287, 1377
MslI CAYNNNNRTG 1 cut(s) 816
Msp20I TGGCCA 2 cut(s) 822, 1009
MspA1I CMGCKG 2 cut(s) 293, 784
MspI CCGG 2 cut(s) 806, 912
MspR9I CCNGG 6 cut(s) 245, 348, 495, 639, 807, 913
MunI CAATTG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 4 cut(s) 245, 348, 495, 639
MvnI CGCG 3 cut(s) 79, 149, 611
MwoI GCNNNNNNNGC 5 cut(s) 16, 148, 296, 352, 1358
NciI CCSGG 2 cut(s) 807, 913
NdeI CATATG 1 cut(s) 825
NdeII GATC 6 cut(s) 34, 397, 634, 868, 978, 1180
NheI GCTAGC 1 cut(s) 1352
NlaIII CATG 8 cut(s) 695, 706, 842, 974, 988, 992, 1021, 1375
NlaIV GGNNCC 1 cut(s) 1040
NsiI ATGCAT 1 cut(s) 990
NspI RCATGY 3 cut(s) 974, 1021, 1375
PciI ACATGT 1 cut(s) 1371
PcsI WCGNNNNNNNCGW 3 cut(s) 105, 114, 123
PctI GAATGC 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 1306
PfeI GAWTC 5 cut(s) 28, 122, 248, 587, 1147
PfoI TCCNGGA 1 cut(s) 805
PkrI GCNGC 3 cut(s) 292, 354, 1156
PleI GAGTC 3 cut(s) 104, 187, 214
PmaCI CACGTG 1 cut(s) 1177
PmlI CACGTG 1 cut(s) 1177
PpsI GAGTC 3 cut(s) 104, 187, 214
Ppu21I YACGTR 1 cut(s) 1177
PscI ACATGT 1 cut(s) 1371
PsiI TTATAA 1 cut(s) 444
Psp1406I AACGTT 1 cut(s) 661
Psp6I CCWGG 4 cut(s) 243, 346, 493, 637
PspCI CACGTG 1 cut(s) 1177
PspGI CCWGG 4 cut(s) 243, 346, 493, 637
PspN4I GGNNCC 1 cut(s) 1040
PspPI GGNCC 2 cut(s) 344, 350
PsrI GAACNNNNNNTAC 4 cut(s) 98, 130, 1042, 1074
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 7 cut(s) 107, 488, 510, 544, 847, 947, 1370
RsaNI GTAC 7 cut(s) 106, 487, 509, 543, 846, 946, 1369
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 4 cut(s) 285, 999, 1287, 1377
SatI GCNGC 3 cut(s) 291, 353, 1155
Sau3AI GATC 6 cut(s) 34, 397, 634, 868, 978, 1180
Sau96I GGNCC 2 cut(s) 344, 350
ScaI AGTACT 1 cut(s) 847
SchI GAGTC 3 cut(s) 104, 188, 215
ScrFI CCNGG 6 cut(s) 245, 348, 495, 639, 807, 913
SfaNI GCATC 3 cut(s) 286, 610, 1166
SmiMI CAYNNNNRTG 1 cut(s) 816
SsiI CCGC 4 cut(s) 147, 353, 777, 784
SspI AATATT 1 cut(s) 449
SspMI CTAG 2 cut(s) 164, 1353
StyD4I CCNGG 6 cut(s) 243, 346, 493, 637, 805, 911
TaaI ACNGT 3 cut(s) 1043, 1136, 1292
TaiI ACGT 3 cut(s) 664, 947, 1179
TaqI TCGA 7 cut(s) 33, 93, 120, 196, 263, 633, 1264
TatI WGTACW 2 cut(s) 845, 1368
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 5 cut(s) 28, 122, 248, 587, 1147
Tru1I TTAA 4 cut(s) 285, 999, 1287, 1377
Tru9I TTAA 4 cut(s) 285, 999, 1287, 1377
TseI GCWGC 2 cut(s) 290, 1154
TspDTI ATGAA 2 cut(s) 708, 827
XapI RAATTY 4 cut(s) 56, 89, 236, 950
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 3 cut(s) 974, 1021, 1375
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmiI GTMKAC 1 cut(s) 1246
XmnI GAANNNNTTC 1 cut(s) 1306
XspI CTAG 2 cut(s) 164, 1353
ZrmI AGTACT 1 cut(s) 847
Zsp2I ATGCAT 1 cut(s) 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.