Rw2G009960

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
10086670 .. 10088926
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G009960.1

Sequence Viewer

Length: 1092 bp
ATGGCCCCTACTCCTACTACTCTGACCGCCATAGCGGGGGAGAAGACCCTCCAACGAGCTTCGTCCGCGACGAAGACGAGCGCCCCAAGGTGGCCTACAACCAATTCAGCAACGAAATTCCGATCATTTCCCTCTCCGGCATCGAAGGTCGACGGCCGCCGCGCTGAGATATGCAAGAAGATCGTCGAGGCCTGCGAGGACTGGGGCGTTTTCCAGATTGTTGATCACGGCATCGACTCCAAGCTCATCTCGGAAATGACCAGTCTCGCCAGAGAGTTCTTCGCTCTGCCGCCGGAGGAAAAGCTCCGGTTCGACATGACCGGTGGCAAAAAGGGTGGCTTCATCGTCTCCAGCCATTTACAGGGAGAGGCGGTGCAGGACTGGCGCGAGATTGTGACCTACTTCTCATACCCGGTGCGCCACCGCGACTACTCGAGGTGGCCGGACAAGCCGGAGGGATGGAGAGATGTGACCAGGCAGTACAGTGACGAGCTGATGGGCTTGGCATGCAAGCTATTGGAGGTCTTATCAGAGGCCATGGGTTTAGAGAAGGAGGCATTGACCAAGGCATGTGTGGACATGGACCAAAAGGTTGTGGTCAATTACTACCCCAAATGCCCCCAACCGGACCTCACTCTCGGACTCAAGCGCCACACAGATCCGGGTACAATTACCCTTTTGCTCCAGGACCAAGTCGGTGGACTTCAGGCCACCAGGGACGGCGGAAAGACGTGGATCACCGTTCAACCTGTGGAAGGAGCCTTTGTGGTCAACCTTGGAGATCATGGACATTTTCTGAGCAACGGGAGGTTCAAGAACGCCGATCACCAGGCGGTGGTGAACTCGAACCACAGCAGGTTGTCCATAGCCACATTCCAGAACCCGGCTCAGGAGGCAATAGTCTACCCACTTAAGGTCAGGGAAGGAGAGAAGCCCATTCTGGAGGAGCCAATCACTTACACTGAGATGTACAAGAAGAAGATGAGCAAGGACCTTGAGCTAGCCAGGCTGAAGAAGCTTGCAAAGGAACAAGTTCAGGACCCGGAGAAAGCCAAACTTGAGGCCAAGCCAGTGGATAATATTTTTGCCTAG

Protein Analysis

363

Amino Acids

40.65

Weight (kDa)

8.13

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 52 - 149 7.9e-22 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 195 - 295 1.9e-32 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010899)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 846
AccB7I CCANNNNNTGG 1 cut(s) 835
AccI GTMKAC 2 cut(s) 150, 903
AccII CGCG 4 cut(s) 68, 162, 387, 426
AclWI GGATC 2 cut(s) 653, 743
AcoI YGGCCR 2 cut(s) 154, 440
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 2 cut(s) 689, 1031
AfaI GTAC 3 cut(s) 482, 667, 971
AfiI CCNNNNNNNGG 9 cut(s) 36, 90, 361, 625, 755, 835, 883, 889, 913
AflII CTTAAG 1 cut(s) 911
AgeI ACCGGT 1 cut(s) 320
AgsI TTSAA 2 cut(s) 746, 814
AjiI CACGTC 1 cut(s) 732
AjnI CCWGG 5 cut(s) 473, 684, 713, 828, 1004
AluBI AGCT 7 cut(s) 59, 244, 304, 493, 514, 1000, 1018
AluI AGCT 7 cut(s) 59, 244, 304, 493, 514, 1000, 1018
Alw26I GTCTC 2 cut(s) 269, 352
AlwI GGATC 2 cut(s) 653, 743
Ama87I CYCGRG 1 cut(s) 433
AoxI GGCC 8 cut(s) 3, 92, 154, 189, 440, 534, 708, 1062
ApoI RAATTY 1 cut(s) 116
AsiGI ACCGGT 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 1032
AspLEI GCGC 5 cut(s) 83, 164, 387, 420, 651
AspS9I GGNCC 6 cut(s) 4, 583, 628, 688, 991, 1039
AsuC2I CCSGG 4 cut(s) 413, 663, 884, 1043
AsuHPI GGTGA 3 cut(s) 730, 818, 850
AsuNHI GCTAGC 1 cut(s) 1000
AvaI CYCGRG 1 cut(s) 433
AvaII GGWCC 5 cut(s) 583, 628, 688, 991, 1039
BbsI GAAGAC 2 cut(s) 50, 80
BccI CCATC 2 cut(s) 453, 490
BceAI ACGGC 3 cut(s) 169, 244, 736
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BciT130I CCWGG 5 cut(s) 475, 686, 715, 830, 1006
BclI TGATCA 1 cut(s) 223
BcnI CCSGG 4 cut(s) 413, 663, 884, 1043
BcoDI GTCTC 2 cut(s) 269, 352
BfaI CTAG 2 cut(s) 1001, 1090
BfoI RGCGCY 2 cut(s) 84, 652
BfrI CTTAAG 1 cut(s) 911
BfuAI ACCTGC 1 cut(s) 846
BisI GCNGC 3 cut(s) 157, 160, 290
BlsI GCNGC 3 cut(s) 158, 161, 291
Bme1390I CCNGG 9 cut(s) 413, 475, 663, 686, 715, 830, 884, 1006, 1043
Bme18I GGWCC 5 cut(s) 583, 628, 688, 991, 1039
BmeT110I CYCGRG 1 cut(s) 433
BmgBI CACGTC 1 cut(s) 732
BmgT120I GGNCC 6 cut(s) 4, 583, 628, 688, 991, 1039
BmiI GGNNCC 4 cut(s) 6, 760, 948, 1041
BmrFI CCNGG 9 cut(s) 413, 475, 663, 686, 715, 830, 884, 1006, 1043
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 2 cut(s) 149, 240
BmtI GCTAGC 1 cut(s) 1004
BmuI ACTGGG 1 cut(s) 211
BpiI GAAGAC 2 cut(s) 50, 80
BpmI CTGGAG 3 cut(s) 334, 668, 962
Bpu10I CCTNAGC 1 cut(s) 888
BpuEI CTTGAG 3 cut(s) 629, 1016, 1079
BpuMI CCSGG 4 cut(s) 413, 663, 884, 1043
BsaJI CCNNGG 5 cut(s) 86, 537, 564, 714, 775
BsaWI WCCGGW 3 cut(s) 306, 320, 625
BsaXI ACNNNNNCTCC 4 cut(s) 357, 387, 750, 780
Bsc4I CCNNNNNNNGG 9 cut(s) 36, 90, 361, 625, 755, 835, 883, 889, 913
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 4 cut(s) 206, 261, 386, 1070
BseBI CCWGG 5 cut(s) 475, 686, 715, 830, 1006
BseDI CCNNGG 5 cut(s) 86, 537, 564, 714, 775
BseGI GGATG 1 cut(s) 464
BseLI CCNNNNNNNGG 9 cut(s) 36, 90, 361, 625, 755, 835, 883, 889, 913
BseMII CTCAG 4 cut(s) 156, 788, 902, 954
BseNI ACTGG 4 cut(s) 206, 261, 386, 1070
BseRI GAGGAG 1 cut(s) 959
BseX3I CGGCCG 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 4 cut(s) 68, 162, 387, 426
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 8 cut(s) 5, 94, 156, 191, 442, 536, 710, 1064
BshTI ACCGGT 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 433
BslFI GGGAC 1 cut(s) 731
BslI CCNNNNNNNGG 9 cut(s) 36, 90, 361, 625, 755, 835, 883, 889, 913
BsmAI GTCTC 2 cut(s) 269, 352
BsmBI CGTCTC 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 731
BsnI GGCC 8 cut(s) 5, 94, 156, 191, 442, 536, 710, 1064
BsoBI CYCGRG 1 cut(s) 433
Bsp1407I TGTACA 1 cut(s) 969
Bsp143I GATC 7 cut(s) 122, 180, 223, 658, 735, 781, 823
Bsp19I CCATGG 1 cut(s) 537
BspANI GGCC 8 cut(s) 5, 94, 156, 191, 442, 536, 710, 1064
BspCNI CTCAG 4 cut(s) 157, 789, 901, 955
BspFNI CGCG 4 cut(s) 68, 162, 387, 426
BspLI GGNNCC 4 cut(s) 6, 760, 948, 1041
BspMI ACCTGC 1 cut(s) 846
BspOI GCTAGC 1 cut(s) 1004
BspPI GGATC 2 cut(s) 653, 743
BspTI CTTAAG 1 cut(s) 911
BsrFI RCCGGY 1 cut(s) 320
BsrGI TGTACA 1 cut(s) 969
BsrI ACTGG 4 cut(s) 206, 261, 386, 1070
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 5 cut(s) 86, 537, 564, 714, 775
BssMI GATC 7 cut(s) 122, 180, 223, 658, 735, 781, 823
BssT1I CCWWGG 4 cut(s) 86, 537, 564, 775
Bst2UI CCWGG 5 cut(s) 475, 686, 715, 830, 1006
Bst4CI ACNGT 2 cut(s) 485, 742
BstAFI CTTAAG 1 cut(s) 911
BstAUI TGTACA 1 cut(s) 969
BstC8I GCNNGC 5 cut(s) 193, 508, 512, 1002, 1020
BstDEI CTNAG 4 cut(s) 165, 797, 888, 963
BstDSI CCRYGG 1 cut(s) 537
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 1 cut(s) 464
BstFNI CGCG 4 cut(s) 68, 162, 387, 426
BstH2I RGCGCY 2 cut(s) 84, 652
BstHHI GCGC 5 cut(s) 83, 164, 387, 420, 651
BstKTI GATC 7 cut(s) 125, 183, 226, 661, 738, 784, 826
BstMAI GTCTC 2 cut(s) 269, 352
BstMBI GATC 7 cut(s) 122, 180, 223, 658, 735, 781, 823
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 7 cut(s) 65, 382, 448, 507, 893, 1006, 1015
BstNI CCWGG 5 cut(s) 475, 686, 715, 830, 1006
BstNSI RCATGY 2 cut(s) 510, 573
BstSCI CCNGG 9 cut(s) 411, 473, 661, 684, 713, 828, 882, 1004, 1041
BstUI CGCG 4 cut(s) 68, 162, 387, 426
BstV2I GAAGAC 2 cut(s) 50, 80
BstX2I RGATCY 1 cut(s) 658
BstXI CCANNNNNNTGG 2 cut(s) 698, 1072
BstYI RGATCY 1 cut(s) 658
BstZI CGGCCG 1 cut(s) 154
BsuRI GGCC 8 cut(s) 5, 94, 156, 191, 442, 536, 710, 1064
BtgI CCRYGG 1 cut(s) 537
BtrI CACGTC 1 cut(s) 732
BtsCI GGATG 1 cut(s) 464
BtsIMutI CAGTG 3 cut(s) 490, 960, 1077
BveI ACCTGC 1 cut(s) 846
Cac8I GCNNGC 5 cut(s) 193, 508, 512, 1002, 1020
CfoI GCGC 5 cut(s) 83, 164, 387, 420, 651
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 6 cut(s) 4, 583, 628, 688, 991, 1039
Csp6I GTAC 3 cut(s) 481, 666, 970
CspAI ACCGGT 1 cut(s) 320
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 6 cut(s) 316, 507, 538, 570, 580, 785
CviQI GTAC 3 cut(s) 481, 666, 970
DdeI CTNAG 4 cut(s) 165, 797, 888, 963
DpnI GATC 7 cut(s) 124, 182, 225, 660, 737, 783, 825
DpnII GATC 7 cut(s) 122, 180, 223, 658, 735, 781, 823
EaeI YGGCCR 2 cut(s) 154, 440
EagI CGGCCG 1 cut(s) 154
EciI GGCGGA 1 cut(s) 738
EclXI CGGCCG 1 cut(s) 154
Eco130I CCWWGG 4 cut(s) 86, 537, 564, 775
Eco147I AGGCCT 1 cut(s) 191
Eco47I GGWCC 5 cut(s) 583, 628, 688, 991, 1039
Eco52I CGGCCG 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 689, 1031
Eco88I CYCGRG 1 cut(s) 433
EcoNI CCTNNNNNAGG 1 cut(s) 753
EcoO109I RGGNCCY 2 cut(s) 991, 1039
EcoRII CCWGG 5 cut(s) 473, 684, 713, 828, 1004
EcoT14I CCWWGG 4 cut(s) 86, 537, 564, 775
ErhI CCWWGG 4 cut(s) 86, 537, 564, 775
Esp3I CGTCTC 1 cut(s) 352
FaeI CATG 6 cut(s) 319, 510, 541, 573, 583, 788
FalI AAGNNNNNCTT 4 cut(s) 323, 355, 1041, 1073
FaqI GGGAC 1 cut(s) 731
FatI CATG 6 cut(s) 315, 506, 537, 569, 579, 784
FauI CCCGC 1 cut(s) 28
FbaI TGATCA 1 cut(s) 223
FblI GTMKAC 2 cut(s) 150, 903
Fnu4HI GCNGC 3 cut(s) 157, 160, 290
FokI GGATG 1 cut(s) 471
Fsp4HI GCNGC 3 cut(s) 157, 160, 290
FspBI CTAG 2 cut(s) 1001, 1090
GlaI GCGC 5 cut(s) 82, 163, 386, 419, 650
GluI GCNGC 3 cut(s) 157, 160, 290
GsuI CTGGAG 3 cut(s) 334, 668, 962
HaeII RGCGCY 2 cut(s) 84, 652
HaeIII GGCC 8 cut(s) 5, 94, 156, 191, 442, 536, 710, 1064
HhaI GCGC 5 cut(s) 83, 164, 387, 420, 651
Hin1II CATG 6 cut(s) 319, 510, 541, 573, 583, 788
Hin6I GCGC 5 cut(s) 81, 162, 385, 418, 649
HinP1I GCGC 5 cut(s) 81, 162, 385, 418, 649
HincII GTYRAC 2 cut(s) 151, 772
HindII GTYRAC 2 cut(s) 151, 772
HindIII AAGCTT 1 cut(s) 1016
HinfI GANTC 2 cut(s) 236, 642
HphI GGTGA 3 cut(s) 730, 818, 850
Hpy166II GTNNAC 6 cut(s) 151, 577, 701, 772, 841, 904
Hpy188I TCNGA 6 cut(s) 24, 122, 253, 532, 641, 798
Hpy188III TCNNGA 6 cut(s) 214, 814, 877, 890, 941, 1037
Hpy8I GTNNAC 6 cut(s) 151, 577, 701, 772, 841, 904
Hpy99I CGWCG 3 cut(s) 73, 155, 188
HpyAV CCTTC 4 cut(s) 139, 544, 749, 917
HpyCH4III ACNGT 2 cut(s) 485, 742
HpyCH4IV ACGT 1 cut(s) 731
HpyCH4V TGCA 4 cut(s) 174, 376, 510, 1022
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 382, 448, 507, 893, 1006, 1015
HpyF3I CTNAG 4 cut(s) 165, 797, 888, 963
HpySE526I ACGT 1 cut(s) 731
Hsp92II CATG 6 cut(s) 319, 510, 541, 573, 583, 788
HspAI GCGC 5 cut(s) 81, 162, 385, 418, 649
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 7 cut(s) 122, 180, 223, 658, 735, 781, 823
LmnI GCTCC 4 cut(s) 309, 687, 758, 946
LweI GCATC 2 cut(s) 149, 240
MaeI CTAG 2 cut(s) 1001, 1090
MaeII ACGT 1 cut(s) 731
MaeIII GTNAC 3 cut(s) 394, 469, 485
MalI GATC 7 cut(s) 124, 182, 225, 660, 737, 783, 825
MboI GATC 7 cut(s) 122, 180, 223, 658, 735, 781, 823
MboII GAAGA 7 cut(s) 55, 85, 190, 271, 988, 991, 1024
MflI RGATCY 1 cut(s) 658
MluCI AATT 4 cut(s) 103, 116, 601, 669
MlyI GAGTC 2 cut(s) 230, 636
MmeI TCCRAC 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 1032
MseI TTAA 1 cut(s) 912
MslI CAYNNNNRTG 1 cut(s) 965
MspCI CTTAAG 1 cut(s) 911
MspR9I CCNGG 9 cut(s) 413, 475, 663, 686, 715, 830, 884, 1006, 1043
MvaI CCWGG 5 cut(s) 475, 686, 715, 830, 1006
MvnI CGCG 4 cut(s) 68, 162, 387, 426
MwoI GCNNNNNNNGC 7 cut(s) 65, 382, 448, 507, 893, 1006, 1015
NciI CCSGG 4 cut(s) 413, 663, 884, 1043
NcoI CCATGG 1 cut(s) 537
NdeII GATC 7 cut(s) 122, 180, 223, 658, 735, 781, 823
NheI GCTAGC 1 cut(s) 1000
NlaIII CATG 6 cut(s) 319, 510, 541, 573, 583, 788
NlaIV GGNNCC 4 cut(s) 6, 760, 948, 1041
NmuCI GTSAC 3 cut(s) 394, 469, 485
NspI RCATGY 2 cut(s) 510, 573
PaeI GCATGC 1 cut(s) 510
PaeR7I CTCGAG 1 cut(s) 433
PceI AGGCCT 1 cut(s) 191
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 192
PdmI GAANNNNTTC 1 cut(s) 1032
PflFI GACNNNGTC 1 cut(s) 692
PflMI CCANNNNNTGG 1 cut(s) 835
PfoI TCCNGGA 1 cut(s) 684
PinAI ACCGGT 1 cut(s) 320
PkrI GCNGC 3 cut(s) 158, 161, 291
PleI GAGTC 2 cut(s) 230, 636
PpsI GAGTC 2 cut(s) 230, 636
PpuMI RGGWCCY 2 cut(s) 991, 1039
Psp5II RGGWCCY 2 cut(s) 991, 1039
Psp6I CCWGG 5 cut(s) 473, 684, 713, 828, 1004
PspGI CCWGG 5 cut(s) 473, 684, 713, 828, 1004
PspN4I GGNNCC 4 cut(s) 6, 760, 948, 1041
PspPI GGNCC 6 cut(s) 4, 583, 628, 688, 991, 1039
PspPPI RGGWCCY 2 cut(s) 991, 1039
PspXI VCTCGAGB 1 cut(s) 433
PsuI RGATCY 1 cut(s) 658
PsyI GACNNNGTC 1 cut(s) 692
RsaI GTAC 3 cut(s) 482, 667, 971
RsaNI GTAC 3 cut(s) 481, 666, 970
RseI CAYNNNNRTG 1 cut(s) 965
SalI GTCGAC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 912
SatI GCNGC 3 cut(s) 157, 160, 290
Sau3AI GATC 7 cut(s) 122, 180, 223, 658, 735, 781, 823
Sau96I GGNCC 6 cut(s) 4, 583, 628, 688, 991, 1039
SchI GAGTC 2 cut(s) 230, 636
ScrFI CCNGG 9 cut(s) 413, 475, 663, 686, 715, 830, 884, 1006, 1043
SfaNI GCATC 2 cut(s) 149, 240
Sfr274I CTCGAG 1 cut(s) 433
SinI GGWCC 5 cut(s) 583, 628, 688, 991, 1039
SlaI CTCGAG 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 965
SmlI CTYRAG 5 cut(s) 433, 644, 911, 995, 1058
SmoI CTYRAG 5 cut(s) 433, 644, 911, 995, 1058
SphI GCATGC 1 cut(s) 510
Sse9I AATT 4 cut(s) 103, 116, 601, 669
SseBI AGGCCT 1 cut(s) 191
SspI AATATT 1 cut(s) 1081
SspMI CTAG 2 cut(s) 1001, 1090
StuI AGGCCT 1 cut(s) 191
StyD4I CCNGG 9 cut(s) 411, 473, 661, 684, 713, 828, 882, 1004, 1041
StyI CCWWGG 4 cut(s) 86, 537, 564, 775
TaaI ACNGT 2 cut(s) 485, 742
TaiI ACGT 1 cut(s) 734
TaqI TCGA 7 cut(s) 143, 150, 186, 234, 312, 434, 845
TasI AATT 4 cut(s) 103, 116, 601, 669
TatI WGTACW 2 cut(s) 480, 969
TauI GCSGC 3 cut(s) 159, 162, 292
Tru1I TTAA 1 cut(s) 912
Tru9I TTAA 1 cut(s) 912
TscAI CASTG 3 cut(s) 490, 967, 1077
TseFI GTSAC 3 cut(s) 394, 469, 485
Tsp45I GTSAC 3 cut(s) 394, 469, 485
TspDTI ATGAA 1 cut(s) 331
TspRI CASTG 3 cut(s) 490, 967, 1077
Tth111I GACNNNGTC 1 cut(s) 692
Van91I CCANNNNNTGG 1 cut(s) 835
Vha464I CTTAAG 1 cut(s) 911
VpaK11BI GGWCC 5 cut(s) 583, 628, 688, 991, 1039
XagI CCTNNNNNAGG 1 cut(s) 753
XapI RAATTY 1 cut(s) 116
XceI RCATGY 2 cut(s) 510, 573
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XhoI CTCGAG 1 cut(s) 433
XmiI GTMKAC 2 cut(s) 150, 903
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 2 cut(s) 1001, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.