Rroxscaffold_2G00143090

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
81131666 .. 81133533
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143090.1

Sequence Viewer

Length: 1095 bp
ATGGCCCCTACTCCTACTACTCTGACCGCCATAGCGGGGGAAAAGACCCTCCAACAGAGCTTCGTCCGCGACGAAGACGAGCGCCCCAAGGTGGCCTACAACCAATTCAGCAACGAAATTCCGATCATTTCCCTCTCCGGCATCGAAGAGGTCGATGGCCGCCGCGCTGAGATTTGCAAGAAGATCGTCGAGGCCTGCGAGGACTGGGGCGTTTTCCAGATTGTTGATCACGGCATCGACTCCAAGCTCATCTCGGAAATGACCAGTCTCGCCAGAGAGTTCTTCGCTTTGCCGCCGGAGGAAAAGCTCCGGTTCGACATGACCGGTGGCAAAAAGGGTGGCTTCATCGTCTCCAGCCATTTACAGGGAGAGGCGGTGCAGGACTGGCGCGAGATTGTGACCTACTTCTCATACCCGGTGCGCCACCGCGACTACTCGAGGTGGCCGGACAAGCCGGAGGGATGGAGAGATGTGACCAAGCAGTACAGTGACGAGCTGATGAGCTTGGCATGCAAGCTATTGGAGGTCTTATCAGAGGCCATGGGTTTAGAGAAGGAGGCACTGACCAAGGCATGTGTGGACATGGACCAAAAGGTTGTGGTGAATTACTACCCGAAATGCCCCCAACCGGACCTCACTCTCGGACTCAAGCGCCACACAGATCCGGGTACAATTACCCTTTTGCTCCAGGACCAAGTCGGTGGACTTCAGGCCACCAGGGACGGCGGAAAGACGTGGATCACCGTTCAACCAGTGGAAGGAGCCTTTGTGGTCAACCTTGGAGATCATGGACATTTTCTGAGCAATGGGAGGTTCAAGAACGCCGATCACCAGGCGGTGGTGAACTCGAACCACAGCAGGTTGTCCATAGCCACATTCCAGAACCCGGCTCAGGAGGCAATAGTCTACCCACTTAAGGTCAGGGAAGGAGAGAAGCCCATTCTGGAGGAGCCAATCACTTACACTGAGATGTACAAGAAGAAGATGAGCAAGGACCTTGAGCTAGCTAGGCTGAAGAAGCTTGCAAAGGAACAAGGGCAGGACTCGGAGAAAGCCAAACTTGAGGCCAAGCCAGTGGATAATATTTTTGCCTAA

Protein Analysis

364

Amino Acids

40.99

Weight (kDa)

5.64

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 40 - 150 2.2e-24 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 196 - 296 1.9e-32 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010899)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 849
AccB7I CCANNNNNTGG 1 cut(s) 838
AccI GTMKAC 1 cut(s) 906
AccII CGCG 4 cut(s) 69, 165, 390, 429
AclWI GGATC 2 cut(s) 656, 746
AcoI YGGCCR 2 cut(s) 157, 443
AcsI RAATTY 1 cut(s) 117
AcuI CTGAAG 2 cut(s) 692, 1034
AfaI GTAC 3 cut(s) 485, 670, 974
AfiI CCNNNNNNNGG 9 cut(s) 36, 91, 364, 628, 758, 838, 886, 892, 916
AflII CTTAAG 1 cut(s) 914
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 2 cut(s) 749, 817
AjiI CACGTC 1 cut(s) 735
AjnI CCWGG 3 cut(s) 687, 716, 831
AluBI AGCT 9 cut(s) 60, 247, 307, 496, 504, 517, 1003, 1007, 1021
AluI AGCT 9 cut(s) 60, 247, 307, 496, 504, 517, 1003, 1007, 1021
Alw26I GTCTC 2 cut(s) 272, 355
AlwI GGATC 2 cut(s) 656, 746
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 8 cut(s) 3, 93, 157, 192, 443, 537, 711, 1065
ApoI RAATTY 1 cut(s) 117
AsiGI ACCGGT 1 cut(s) 323
AspLEI GCGC 5 cut(s) 84, 167, 390, 423, 654
AspS9I GGNCC 5 cut(s) 4, 586, 631, 691, 994
AsuC2I CCSGG 3 cut(s) 416, 666, 887
AsuHPI GGTGA 4 cut(s) 613, 733, 821, 853
AsuNHI GCTAGC 1 cut(s) 1003
AvaI CYCGRG 1 cut(s) 436
AvaII GGWCC 4 cut(s) 586, 631, 691, 994
BbsI GAAGAC 1 cut(s) 81
BccI CCATC 2 cut(s) 149, 456
BceAI ACGGC 2 cut(s) 247, 739
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 3 cut(s) 689, 718, 833
BclI TGATCA 1 cut(s) 226
BcnI CCSGG 3 cut(s) 416, 666, 887
BcoDI GTCTC 2 cut(s) 272, 355
BfaI CTAG 2 cut(s) 1004, 1008
BfoI RGCGCY 2 cut(s) 85, 655
BfrI CTTAAG 1 cut(s) 914
BfuAI ACCTGC 1 cut(s) 849
BisI GCNGC 3 cut(s) 160, 163, 293
BlsI GCNGC 3 cut(s) 161, 164, 294
Bme1390I CCNGG 6 cut(s) 416, 666, 689, 718, 833, 887
Bme18I GGWCC 4 cut(s) 586, 631, 691, 994
BmeT110I CYCGRG 1 cut(s) 436
BmgBI CACGTC 1 cut(s) 735
BmgT120I GGNCC 5 cut(s) 4, 586, 631, 691, 994
BmiI GGNNCC 3 cut(s) 6, 763, 951
BmrFI CCNGG 6 cut(s) 416, 666, 689, 718, 833, 887
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 150, 243
BmtI GCTAGC 1 cut(s) 1007
BmuI ACTGGG 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 81
BpmI CTGGAG 3 cut(s) 337, 671, 965
Bpu10I CCTNAGC 1 cut(s) 891
BpuEI CTTGAG 3 cut(s) 632, 1019, 1082
BpuMI CCSGG 3 cut(s) 416, 666, 887
BsaJI CCNNGG 5 cut(s) 87, 540, 567, 717, 778
BsaWI WCCGGW 3 cut(s) 309, 323, 628
BsaXI ACNNNNNCTCC 4 cut(s) 360, 390, 753, 783
Bsc4I CCNNNNNNNGG 9 cut(s) 36, 91, 364, 628, 758, 838, 886, 892, 916
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 5 cut(s) 209, 264, 389, 752, 1073
Bse3DI GCAATG 1 cut(s) 811
BseBI CCWGG 3 cut(s) 689, 718, 833
BseDI CCNNGG 5 cut(s) 87, 540, 567, 717, 778
BseGI GGATG 1 cut(s) 467
BseLI CCNNNNNNNGG 9 cut(s) 36, 91, 364, 628, 758, 838, 886, 892, 916
BseMI GCAATG 1 cut(s) 811
BseMII CTCAG 4 cut(s) 159, 791, 905, 957
BseNI ACTGG 5 cut(s) 209, 264, 389, 752, 1073
BseRI GAGGAG 1 cut(s) 962
BsgI GTGCAG 1 cut(s) 398
Bsh1236I CGCG 4 cut(s) 69, 165, 390, 429
BshFI GGCC 8 cut(s) 5, 95, 159, 194, 445, 539, 713, 1067
BshTI ACCGGT 1 cut(s) 323
BsiHKCI CYCGRG 1 cut(s) 436
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 9 cut(s) 36, 91, 364, 628, 758, 838, 886, 892, 916
BsmAI GTCTC 2 cut(s) 272, 355
BsmBI CGTCTC 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 734
BsnI GGCC 8 cut(s) 5, 95, 159, 194, 445, 539, 713, 1067
BsoBI CYCGRG 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 972
Bsp143I GATC 7 cut(s) 123, 183, 226, 661, 738, 784, 826
Bsp19I CCATGG 1 cut(s) 540
BspANI GGCC 8 cut(s) 5, 95, 159, 194, 445, 539, 713, 1067
BspCNI CTCAG 4 cut(s) 160, 792, 904, 958
BspFNI CGCG 4 cut(s) 69, 165, 390, 429
BspLI GGNNCC 3 cut(s) 6, 763, 951
BspMI ACCTGC 1 cut(s) 849
BspOI GCTAGC 1 cut(s) 1007
BspPI GGATC 2 cut(s) 656, 746
BspTI CTTAAG 1 cut(s) 914
BsrDI GCAATG 1 cut(s) 811
BsrFI RCCGGY 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 972
BsrI ACTGG 5 cut(s) 209, 264, 389, 752, 1073
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 5 cut(s) 87, 540, 567, 717, 778
BssMI GATC 7 cut(s) 123, 183, 226, 661, 738, 784, 826
BssT1I CCWWGG 4 cut(s) 87, 540, 567, 778
Bst2UI CCWGG 3 cut(s) 689, 718, 833
Bst4CI ACNGT 2 cut(s) 488, 745
Bst6I CTCTTC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 914
BstAUI TGTACA 1 cut(s) 972
BstC8I GCNNGC 5 cut(s) 196, 511, 515, 1005, 1023
BstDEI CTNAG 4 cut(s) 168, 800, 891, 966
BstDSI CCRYGG 1 cut(s) 540
BstF5I GGATG 1 cut(s) 467
BstFNI CGCG 4 cut(s) 69, 165, 390, 429
BstH2I RGCGCY 2 cut(s) 85, 655
BstHHI GCGC 5 cut(s) 84, 167, 390, 423, 654
BstKTI GATC 7 cut(s) 126, 186, 229, 664, 741, 787, 829
BstMAI GTCTC 2 cut(s) 272, 355
BstMBI GATC 7 cut(s) 123, 183, 226, 661, 738, 784, 826
BstMWI GCNNNNNNNGC 7 cut(s) 66, 385, 451, 510, 896, 1009, 1018
BstNI CCWGG 3 cut(s) 689, 718, 833
BstNSI RCATGY 2 cut(s) 513, 576
BstSCI CCNGG 6 cut(s) 414, 664, 687, 716, 831, 885
BstUI CGCG 4 cut(s) 69, 165, 390, 429
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 661
BstXI CCANNNNNNTGG 2 cut(s) 701, 1075
BstYI RGATCY 1 cut(s) 661
BsuRI GGCC 8 cut(s) 5, 95, 159, 194, 445, 539, 713, 1067
BtgI CCRYGG 1 cut(s) 540
BtrI CACGTC 1 cut(s) 735
BtsCI GGATG 1 cut(s) 467
BtsIMutI CAGTG 5 cut(s) 493, 560, 759, 963, 1080
BveI ACCTGC 1 cut(s) 849
Cac8I GCNNGC 5 cut(s) 196, 511, 515, 1005, 1023
CfoI GCGC 5 cut(s) 84, 167, 390, 423, 654
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 5 cut(s) 4, 586, 631, 691, 994
Csp6I GTAC 3 cut(s) 484, 669, 973
CspAI ACCGGT 1 cut(s) 323
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 6 cut(s) 319, 510, 541, 573, 583, 788
CviQI GTAC 3 cut(s) 484, 669, 973
DdeI CTNAG 4 cut(s) 168, 800, 891, 966
DpnI GATC 7 cut(s) 125, 185, 228, 663, 740, 786, 828
DpnII GATC 7 cut(s) 123, 183, 226, 661, 738, 784, 826
EaeI YGGCCR 2 cut(s) 157, 443
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 741
Eco130I CCWWGG 4 cut(s) 87, 540, 567, 778
Eco147I AGGCCT 1 cut(s) 194
Eco47I GGWCC 4 cut(s) 586, 631, 691, 994
Eco57I CTGAAG 2 cut(s) 692, 1034
Eco88I CYCGRG 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 994
EcoRII CCWGG 3 cut(s) 687, 716, 831
EcoT14I CCWWGG 4 cut(s) 87, 540, 567, 778
ErhI CCWWGG 4 cut(s) 87, 540, 567, 778
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 6 cut(s) 322, 513, 544, 576, 586, 791
FaiI YATR 9 cut(s) 32, 320, 412, 511, 542, 574, 584, 789, 869
FalI AAGNNNNNCTT 4 cut(s) 326, 358, 1044, 1076
FaqI GGGAC 1 cut(s) 734
FatI CATG 6 cut(s) 318, 509, 540, 572, 582, 787
FauI CCCGC 1 cut(s) 28
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 1 cut(s) 906
Fnu4HI GCNGC 3 cut(s) 160, 163, 293
FokI GGATG 1 cut(s) 474
Fsp4HI GCNGC 3 cut(s) 160, 163, 293
FspBI CTAG 2 cut(s) 1004, 1008
GlaI GCGC 5 cut(s) 83, 166, 389, 422, 653
GluI GCNGC 3 cut(s) 160, 163, 293
GsuI CTGGAG 3 cut(s) 337, 671, 965
HaeII RGCGCY 2 cut(s) 85, 655
HaeIII GGCC 8 cut(s) 5, 95, 159, 194, 445, 539, 713, 1067
HhaI GCGC 5 cut(s) 84, 167, 390, 423, 654
Hin1II CATG 6 cut(s) 322, 513, 544, 576, 586, 791
Hin6I GCGC 5 cut(s) 82, 165, 388, 421, 652
HinP1I GCGC 5 cut(s) 82, 165, 388, 421, 652
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 1 cut(s) 1019
HinfI GANTC 3 cut(s) 239, 645, 1043
HphI GGTGA 4 cut(s) 613, 733, 821, 853
Hpy166II GTNNAC 5 cut(s) 580, 704, 775, 844, 907
Hpy188I TCNGA 7 cut(s) 24, 123, 256, 535, 644, 801, 1048
Hpy188III TCNNGA 5 cut(s) 217, 817, 880, 893, 944
Hpy8I GTNNAC 5 cut(s) 580, 704, 775, 844, 907
Hpy99I CGWCG 2 cut(s) 74, 191
HpyAV CCTTC 3 cut(s) 547, 752, 920
HpyCH4III ACNGT 2 cut(s) 488, 745
HpyCH4IV ACGT 1 cut(s) 734
HpyCH4V TGCA 4 cut(s) 177, 379, 513, 1025
HpyF10VI GCNNNNNNNGC 7 cut(s) 66, 385, 451, 510, 896, 1009, 1018
HpyF3I CTNAG 4 cut(s) 168, 800, 891, 966
HpySE526I ACGT 1 cut(s) 734
Hsp92II CATG 6 cut(s) 322, 513, 544, 576, 586, 791
HspAI GCGC 5 cut(s) 82, 165, 388, 421, 652
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 7 cut(s) 123, 183, 226, 661, 738, 784, 826
LmnI GCTCC 4 cut(s) 312, 690, 761, 949
LweI GCATC 2 cut(s) 150, 243
MaeI CTAG 2 cut(s) 1004, 1008
MaeII ACGT 1 cut(s) 734
MaeIII GTNAC 3 cut(s) 397, 472, 488
MalI GATC 7 cut(s) 125, 185, 228, 663, 740, 786, 828
MboI GATC 7 cut(s) 123, 183, 226, 661, 738, 784, 826
MboII GAAGA 7 cut(s) 86, 158, 193, 274, 991, 994, 1027
MflI RGATCY 1 cut(s) 661
MluCI AATT 4 cut(s) 104, 117, 604, 672
MlyI GAGTC 3 cut(s) 233, 639, 1037
MmeI TCCRAC 1 cut(s) 76
MseI TTAA 1 cut(s) 915
MslI CAYNNNNRTG 1 cut(s) 968
MspCI CTTAAG 1 cut(s) 914
MspR9I CCNGG 6 cut(s) 416, 666, 689, 718, 833, 887
MvaI CCWGG 3 cut(s) 689, 718, 833
MvnI CGCG 4 cut(s) 69, 165, 390, 429
MwoI GCNNNNNNNGC 7 cut(s) 66, 385, 451, 510, 896, 1009, 1018
NciI CCSGG 3 cut(s) 416, 666, 887
NcoI CCATGG 1 cut(s) 540
NdeII GATC 7 cut(s) 123, 183, 226, 661, 738, 784, 826
NheI GCTAGC 1 cut(s) 1003
NlaIII CATG 6 cut(s) 322, 513, 544, 576, 586, 791
NlaIV GGNNCC 3 cut(s) 6, 763, 951
NmuCI GTSAC 3 cut(s) 397, 472, 488
NspI RCATGY 2 cut(s) 513, 576
PaeI GCATGC 1 cut(s) 513
PaeR7I CTCGAG 1 cut(s) 436
PceI AGGCCT 1 cut(s) 194
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 150, 195
PflFI GACNNNGTC 1 cut(s) 695
PflMI CCANNNNNTGG 1 cut(s) 838
PfoI TCCNGGA 1 cut(s) 687
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 3 cut(s) 161, 164, 294
PleI GAGTC 3 cut(s) 233, 639, 1037
PpsI GAGTC 3 cut(s) 233, 639, 1037
PpuMI RGGWCCY 1 cut(s) 994
Psp5II RGGWCCY 1 cut(s) 994
Psp6I CCWGG 3 cut(s) 687, 716, 831
PspGI CCWGG 3 cut(s) 687, 716, 831
PspN4I GGNNCC 3 cut(s) 6, 763, 951
PspPI GGNCC 5 cut(s) 4, 586, 631, 691, 994
PspPPI RGGWCCY 1 cut(s) 994
PspXI VCTCGAGB 1 cut(s) 436
PsuI RGATCY 1 cut(s) 661
PsyI GACNNNGTC 1 cut(s) 695
RsaI GTAC 3 cut(s) 485, 670, 974
RsaNI GTAC 3 cut(s) 484, 669, 973
RseI CAYNNNNRTG 1 cut(s) 968
SaqAI TTAA 1 cut(s) 915
SatI GCNGC 3 cut(s) 160, 163, 293
Sau3AI GATC 7 cut(s) 123, 183, 226, 661, 738, 784, 826
Sau96I GGNCC 5 cut(s) 4, 586, 631, 691, 994
SchI GAGTC 3 cut(s) 233, 639, 1037
ScrFI CCNGG 6 cut(s) 416, 666, 689, 718, 833, 887
SfaNI GCATC 2 cut(s) 150, 243
Sfr274I CTCGAG 1 cut(s) 436
SinI GGWCC 4 cut(s) 586, 631, 691, 994
SlaI CTCGAG 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 968
SmlI CTYRAG 5 cut(s) 436, 647, 914, 998, 1061
SmoI CTYRAG 5 cut(s) 436, 647, 914, 998, 1061
SphI GCATGC 1 cut(s) 513
Sse9I AATT 4 cut(s) 104, 117, 604, 672
SseBI AGGCCT 1 cut(s) 194
SspI AATATT 1 cut(s) 1084
SspMI CTAG 2 cut(s) 1004, 1008
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 6 cut(s) 414, 664, 687, 716, 831, 885
StyI CCWWGG 4 cut(s) 87, 540, 567, 778
TaaI ACNGT 2 cut(s) 488, 745
TaiI ACGT 1 cut(s) 737
TaqI TCGA 7 cut(s) 144, 153, 189, 237, 315, 437, 848
TasI AATT 4 cut(s) 104, 117, 604, 672
TatI WGTACW 2 cut(s) 483, 972
TauI GCSGC 3 cut(s) 162, 165, 295
Tru1I TTAA 1 cut(s) 915
Tru9I TTAA 1 cut(s) 915
TscAI CASTG 5 cut(s) 493, 567, 759, 970, 1080
TseFI GTSAC 3 cut(s) 397, 472, 488
Tsp45I GTSAC 3 cut(s) 397, 472, 488
TspDTI ATGAA 1 cut(s) 334
TspRI CASTG 5 cut(s) 493, 567, 759, 970, 1080
Tth111I GACNNNGTC 1 cut(s) 695
Van91I CCANNNNNTGG 1 cut(s) 838
Vha464I CTTAAG 1 cut(s) 914
VpaK11BI GGWCC 4 cut(s) 586, 631, 691, 994
XapI RAATTY 1 cut(s) 117
XceI RCATGY 2 cut(s) 513, 576
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XhoI CTCGAG 1 cut(s) 436
XmiI GTMKAC 1 cut(s) 906
XspI CTAG 2 cut(s) 1004, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.