AT3G51470

protein phosphatase 2C 47

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008979
Physical Location & Seq
Reverse (-)
19097722 .. 19099849
2128 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51470.1

Sequence Viewer

Length: 1086 bp
ATGGCACCGGTGACTGAAGTTTCTCCGATGATCAACACATTGGAAGTCGCAGATGACAAAATGACGAATCTCAGTTCCTCTGGGAAACCTCCAAGAAACATCTCTGCAATGCGCCATTGCAACAGCACTGCCTGGTTGACCGATTACGAAGGAGATGAGAGATTTGGTGCAAAATCTCCGGAAGGAGTAAATTCAACATTCCAGCCTGTGTTTAGATCTGGAAGTTGGTCTGATAAAGGACCAAAACAATCAATGGAAGATGAATTCATTTGTGTTGATGATCTCACTGAGTATATTGGATCATCCACTGGAGCTTTCTATGGGGTGTTTGATGGACACGGAGGTGTTGATGCTGCATCATTCACAAAAAAGAACATTATGAAGCTTGTAATGGAAGACAAACATTTCCCAACCAGCACAAAGAAGGCAACAAGGAGTGCTTTTGTGAAGACTGATCATGCTTTGGCTGATGCTTCTTCTCTTGATAGATCCTCTGGCACTACTGCACTCACTGCTCTCATTTTGGACAAGACTATGTTGATTGCAAACGCTGGTGACTCCAGAGCGGTGCTTGGGAAACGAGGCAGAGCCATTGAGTTATCAAAGGACCACAAACCTAACTGTACTTCCGAGCGGCTACGTATTGAGAAGCTTGGAGGTGTGATCTACGATGGTTACCTTAACGGGCAGCTATCTGTGGCTCGAGCCTTAGGAGATTGGCACATTAAGGGAACTAAAGGTTCACTCTGCCCGCTCAGCTGCGAGCCTGAGCTGGAAGAGATTGTGCTGACGGAAGAGGATGAGTATCTTATAATGGGCTGTGATGGACTCTGGGATGTGATGAGTAGCCAGTGTGCAGTGACGATGGTGAGGAGGGAGCTGATGCAGCATAATGATCCTGAGAGATGCTCTCAAGCTTTGGTTAAGGAGGCTCTTCAACGAAACAGCTGTGACAATCTTACTGTAGTGGTTGTCTGTTTCTCGCCCGAAGCGCCTCCTCGGATTGAGATTCCCAAGTCGCATAAGAGGAGGAGCATCTCTGCAGAGGGATTGGATCTCCTCAAAGGTGTTTTGAACGAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

361

Amino Acids

39.49

Weight (kDa)

5.5

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 80 - 319 1.4e-70 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 812
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 3 cut(s) 566, 634, 754
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 3 cut(s) 566, 634, 752
AclWI GGATC 4 cut(s) 307, 483, 890, 1062
AcsI RAATTY 2 cut(s) 190, 263
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 625
AgeI ACCGGT 1 cut(s) 7
AgsI TTSAA 3 cut(s) 195, 938, 1075
AjnI CCWGG 1 cut(s) 131
AleI CACNNNNGTG 1 cut(s) 342
AluBI AGCT 9 cut(s) 314, 385, 652, 691, 759, 772, 880, 917, 948
AluI AGCT 9 cut(s) 314, 385, 652, 691, 759, 772, 880, 917, 948
AlwI GGATC 4 cut(s) 307, 483, 890, 1062
Ama87I CYCGRG 1 cut(s) 702
Aor13HI TCCGGA 1 cut(s) 178
ApeKI GCWGC 4 cut(s) 353, 688, 759, 886
ApoI RAATTY 2 cut(s) 190, 263
AsiGI ACCGGT 1 cut(s) 7
AspLEI GCGC 2 cut(s) 114, 994
AspS9I GGNCC 2 cut(s) 239, 607
AsuHPI GGTGA 3 cut(s) 22, 566, 880
AvaI CYCGRG 1 cut(s) 702
AvaII GGWCC 2 cut(s) 239, 607
AxyI CCTNAGG 1 cut(s) 709
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 402, 455
BbvI GCAGC 4 cut(s) 340, 700, 746, 898
BccI CCATC 4 cut(s) 326, 665, 818, 859
BciT130I CCWGG 1 cut(s) 133
BclI TGATCA 2 cut(s) 30, 454
BfmI CTRYAG 2 cut(s) 963, 1041
BfoI RGCGCY 1 cut(s) 995
BglII AGATCT 1 cut(s) 215
BisI GCNGC 5 cut(s) 354, 635, 689, 760, 887
BlpI GCTNAGC 1 cut(s) 755
BlsI GCNGC 5 cut(s) 355, 636, 690, 761, 888
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 2 cut(s) 239, 607
BmeT110I CYCGRG 1 cut(s) 702
BmgT120I GGNCC 2 cut(s) 239, 607
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 6 cut(s) 340, 365, 460, 873, 896, 1044
BpiI GAAGAC 2 cut(s) 402, 455
BplI GAGNNNNNCTC 4 cut(s) 893, 925, 895, 927
BpmI CTGGAG 2 cut(s) 330, 544
Bpu10I CCTNAGC 1 cut(s) 768
Bpu1102I GCTNAGC 1 cut(s) 755
BpuEI CTTGAG 1 cut(s) 897
BsaAI YACGTR 1 cut(s) 641
BsaBI GATNNNNATC 1 cut(s) 804
BsaJI CCNNGG 1 cut(s) 998
BsaWI WCCGGW 2 cut(s) 7, 178
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 2 cut(s) 313, 850
Bse21I CCTNAGG 1 cut(s) 709
Bse3DI GCAATG 2 cut(s) 114, 115
Bse8I GATNNNNATC 1 cut(s) 804
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 998
BseGI GGATG 3 cut(s) 302, 805, 841
BseJI GATNNNNATC 1 cut(s) 804
BseMI GCAATG 2 cut(s) 114, 115
BseMII CTCAG 5 cut(s) 85, 279, 759, 769, 891
BseNI ACTGG 2 cut(s) 313, 850
BseRI GAGGAG 5 cut(s) 886, 987, 1042, 1045, 1049
BseXI GCAGC 4 cut(s) 340, 700, 746, 898
BsgI GTGCAG 2 cut(s) 489, 876
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 7
BsiHKCI CYCGRG 1 cut(s) 702
BsiSI CCGG 2 cut(s) 8, 179
BsoBI CYCGRG 1 cut(s) 702
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 9 cut(s) 30, 215, 280, 299, 454, 488, 663, 895, 1054
Bsp1720I GCTNAGC 1 cut(s) 755
BspACI CCGC 3 cut(s) 566, 634, 752
BspCNI CTCAG 5 cut(s) 84, 280, 760, 768, 892
BspEI TCCGGA 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 1045
BspPI GGATC 4 cut(s) 307, 483, 890, 1062
BspQI GCTCTTC 1 cut(s) 939
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 3 cut(s) 566, 634, 754
BsrDI GCAATG 2 cut(s) 114, 115
BsrFI RCCGGY 1 cut(s) 7
BsrI ACTGG 2 cut(s) 313, 850
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 998
BssMI GATC 9 cut(s) 30, 215, 280, 299, 454, 488, 663, 895, 1054
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 623, 964
Bst6I CTCTTC 3 cut(s) 771, 789, 939
BstAPI GCANNNNNTGC 1 cut(s) 512
BstBAI YACGTR 1 cut(s) 641
BstC8I GCNNGC 2 cut(s) 752, 764
BstDEI CTNAG 6 cut(s) 71, 288, 709, 755, 768, 900
BstEII GGTNACC 1 cut(s) 674
BstF5I GGATG 3 cut(s) 302, 805, 841
BstH2I RGCGCY 1 cut(s) 995
BstHHI GCGC 2 cut(s) 114, 994
BstKTI GATC 9 cut(s) 33, 218, 283, 302, 457, 491, 666, 898, 1057
BstMBI GATC 9 cut(s) 30, 215, 280, 299, 454, 488, 663, 895, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 512, 756, 886, 991
BstNI CCWGG 1 cut(s) 133
BstPI GGTNACC 1 cut(s) 674
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 2 cut(s) 963, 1041
BstSNI TACGTA 1 cut(s) 641
BstV1I GCAGC 4 cut(s) 340, 700, 746, 898
BstV2I GAAGAC 2 cut(s) 402, 455
BstX2I RGATCY 3 cut(s) 215, 488, 1054
BstYI RGATCY 3 cut(s) 215, 488, 1054
Bsu36I CCTNAGG 1 cut(s) 709
BtsCI GGATG 3 cut(s) 302, 805, 841
BtsI GCAGTG 3 cut(s) 126, 510, 864
BtsIMutI CAGTG 6 cut(s) 126, 285, 306, 510, 857, 864
Cac8I GCNNGC 2 cut(s) 752, 764
CfoI GCGC 2 cut(s) 114, 994
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 239, 607
Csp6I GTAC 1 cut(s) 624
CspAI ACCGGT 1 cut(s) 7
CviAII CATG 1 cut(s) 458
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 6 cut(s) 71, 288, 709, 755, 768, 900
DpnI GATC 9 cut(s) 32, 217, 282, 301, 456, 490, 665, 897, 1056
DpnII GATC 9 cut(s) 30, 215, 280, 299, 454, 488, 663, 895, 1054
Eam1104I CTCTTC 3 cut(s) 771, 789, 939
EarI CTCTTC 3 cut(s) 771, 789, 939
Eco105I TACGTA 1 cut(s) 641
Eco47I GGWCC 2 cut(s) 239, 607
Eco57I CTGAAG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 709
Eco88I CYCGRG 1 cut(s) 702
Eco91I GGTNACC 1 cut(s) 674
EcoO65I GGTNACC 1 cut(s) 674
EcoRI GAATTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 131
FaeI CATG 1 cut(s) 461
FaiI YATR 8 cut(s) 294, 321, 380, 459, 536, 812, 891, 1023
FalI AAGNNNNNCTT 2 cut(s) 424, 456
FatI CATG 1 cut(s) 457
FauI CCCGC 1 cut(s) 759
FbaI TGATCA 2 cut(s) 30, 454
Fnu4HI GCNGC 5 cut(s) 354, 635, 689, 760, 887
FokI GGATG 3 cut(s) 289, 812, 848
Fsp4HI GCNGC 5 cut(s) 354, 635, 689, 760, 887
GlaI GCGC 2 cut(s) 113, 993
GluI GCNGC 5 cut(s) 354, 635, 689, 760, 887
GsuI CTGGAG 2 cut(s) 330, 544
HaeII RGCGCY 1 cut(s) 995
HapII CCGG 2 cut(s) 8, 179
HhaI GCGC 2 cut(s) 114, 994
Hin1II CATG 1 cut(s) 461
Hin6I GCGC 2 cut(s) 112, 992
HinP1I GCGC 2 cut(s) 112, 992
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 3 cut(s) 383, 650, 915
HinfI GANTC 4 cut(s) 67, 557, 828, 1009
HpaII CCGG 2 cut(s) 8, 179
HphI GGTGA 3 cut(s) 22, 566, 880
Hpy166II GTNNAC 2 cut(s) 138, 743
Hpy188I TCNGA 4 cut(s) 27, 232, 631, 1002
Hpy188III TCNNGA 5 cut(s) 179, 219, 482, 561, 899
Hpy8I GTNNAC 2 cut(s) 138, 743
HpyAV CCTTC 3 cut(s) 143, 176, 418
HpyCH4III ACNGT 2 cut(s) 623, 964
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 9 cut(s) 107, 120, 170, 356, 506, 545, 857, 886, 1043
HpyF10VI GCNNNNNNNGC 4 cut(s) 512, 756, 886, 991
HpyF3I CTNAG 6 cut(s) 71, 288, 709, 755, 768, 900
HpySE526I ACGT 1 cut(s) 640
Hsp92II CATG 1 cut(s) 461
HspAI GCGC 2 cut(s) 112, 992
Kpn2I TCCGGA 1 cut(s) 178
Ksp22I TGATCA 2 cut(s) 30, 454
Kzo9I GATC 9 cut(s) 30, 215, 280, 299, 454, 488, 663, 895, 1054
LguI GCTCTTC 1 cut(s) 939
LmnI GCTCC 3 cut(s) 311, 877, 1032
Lsp1109I GCAGC 4 cut(s) 340, 700, 746, 898
LweI GCATC 6 cut(s) 340, 365, 460, 873, 896, 1044
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 5 cut(s) 10, 554, 674, 859, 950
MalI GATC 9 cut(s) 32, 217, 282, 301, 456, 490, 665, 897, 1056
MbiI CCGCTC 3 cut(s) 566, 634, 754
MboI GATC 9 cut(s) 30, 215, 280, 299, 454, 488, 663, 895, 1054
MboII GAAGA 7 cut(s) 269, 407, 460, 468, 788, 806, 926
MflI RGATCY 3 cut(s) 215, 488, 1054
MluCI AATT 2 cut(s) 190, 263
MlyI GAGTC 2 cut(s) 551, 822
MroI TCCGGA 1 cut(s) 178
MseI TTAA 3 cut(s) 681, 726, 924
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 2 cut(s) 759, 948
MspI CCGG 2 cut(s) 8, 179
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 4 cut(s) 512, 756, 886, 991
NdeII GATC 9 cut(s) 30, 215, 280, 299, 454, 488, 663, 895, 1054
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 4 cut(s) 10, 554, 859, 950
OliI CACNNNNGTG 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 702
PciSI GCTCTTC 1 cut(s) 939
PfeI GAWTC 2 cut(s) 67, 1009
PinAI ACCGGT 1 cut(s) 7
PkrI GCNGC 5 cut(s) 355, 636, 690, 761, 888
PleI GAGTC 2 cut(s) 551, 822
PpsI GAGTC 2 cut(s) 551, 822
Ppu21I YACGTR 1 cut(s) 641
PsiI TTATAA 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 131
PspEI GGTNACC 1 cut(s) 674
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 239, 607
PspXI VCTCGAGB 1 cut(s) 702
PstI CTGCAG 1 cut(s) 1045
PsuI RGATCY 3 cut(s) 215, 488, 1054
PvuII CAGCTG 2 cut(s) 759, 948
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 939
SaqAI TTAA 3 cut(s) 681, 726, 924
SatI GCNGC 5 cut(s) 354, 635, 689, 760, 887
Sau3AI GATC 9 cut(s) 30, 215, 280, 299, 454, 488, 663, 895, 1054
Sau96I GGNCC 2 cut(s) 239, 607
SchI GAGTC 2 cut(s) 551, 822
ScrFI CCNGG 1 cut(s) 133
SfaNI GCATC 6 cut(s) 340, 365, 460, 873, 896, 1044
SfcI CTRYAG 2 cut(s) 963, 1041
Sfr274I CTCGAG 1 cut(s) 702
SgrAI CRCCGGYG 1 cut(s) 7
SinI GGWCC 2 cut(s) 239, 607
SlaI CTCGAG 1 cut(s) 702
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 2 cut(s) 702, 912
SmoI CTYRAG 2 cut(s) 702, 912
SnaBI TACGTA 1 cut(s) 641
Sse9I AATT 2 cut(s) 190, 263
SsiI CCGC 3 cut(s) 566, 634, 752
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 2 cut(s) 623, 964
TaiI ACGT 1 cut(s) 643
TaqI TCGA 1 cut(s) 703
TaqII GACCGA 1 cut(s) 155
TasI AATT 2 cut(s) 190, 263
TatI WGTACW 1 cut(s) 623
TauI GCSGC 1 cut(s) 637
TfiI GAWTC 2 cut(s) 67, 1009
Tru1I TTAA 3 cut(s) 681, 726, 924
Tru9I TTAA 3 cut(s) 681, 726, 924
TscAI CASTG 6 cut(s) 133, 292, 313, 517, 857, 864
TseFI GTSAC 4 cut(s) 10, 554, 859, 950
TseI GCWGC 4 cut(s) 353, 688, 759, 886
Tsp45I GTSAC 4 cut(s) 10, 554, 859, 950
TspDTI ATGAA 3 cut(s) 256, 276, 395
TspGWI ACGGA 2 cut(s) 354, 806
TspRI CASTG 6 cut(s) 133, 292, 313, 517, 857, 864
VpaK11BI GGWCC 2 cut(s) 239, 607
XapI RAATTY 2 cut(s) 190, 263
XhoI CTCGAG 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.