FvH4_1g10220

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008979
Physical Location & Seq
Forward (+)
5574362 .. 5577350
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10220.t4

Sequence Viewer

Length: 1173 bp
ATGATGGCTTCAGGATTTGAAATATCGACTCAGGTGAATGGTTATGTTGGTGGGTGCTTAAAGGACAATGCTGCAATGTCTGCTCCTGCCCCTGCCATGGAAGATCACAATGGAGATAGTTTGGTCAACAATTCGAATCAAGTTGCTCTTGGGAAGCCGCCGCGGAACATTTCGGTTATGAGGCATTGCACTAGCTCTGCATTCTTGTGTGAATCAGATTCAGATCTTGCAAATTTTGGCTTCAAGTCGCCTTCAGTTGAGACATCAGAGTTTGTTTCTGTATTCCGTTCGGGGAGCTGTTCAGAAAAAGGACCTAAACAGTATATGGAAGATGAGTATATTTGTGTAGATGATCTTGAGGGACATCTTGGTGATTCAGTAAACTTGCCTTCTCATGGGGCATTTTATGGGGTCTTTGATGGACATGGTGGTGTTGATGCTGCATCATTCATAAAAAAGAACCTGCTTAATTTCATTGTTCAAGACTCTCATTTCCCAGATGCCCTTAAAAAAGCAACTAGAAGCGCTTTTGTGAAGGCTGATCATGCAATTGCAGATGCTACCTCTCTTGACAAGTCCTCTGGTACCACTGCTTTGACTGCCTTTATCTTAGGAAGGAACATGCTAATCGCTAACGCTGGTGATTGTCGAGCTGTGTTGGGGAAGCGTGGAAGGGCAATTGAACTATCTAAAGATCATAAACCTAATTGTACCTCCGAAAGATTAAGAATTGAGAAGCTGGGTGGTGTCATCTATGATGGATACCTCAATGGCCAACTATCAGTGGCGCGTGCTCTTGGTGACTGGCATATCAAGGGCTCCAAAGGTTCAAACTGCCCCTTAAGCTCGGAGCCAGAGTTGGAGGAGCTTGTCCTAACCGAAGAAGATGAGTTCTTGATCATGGGATGTGATGGCTTGTGGGATGTAATGAGCAGCCAGTGTGCAGTTACAATGGTAAGAAAGGAGCTCATGCAACATAATGATCCTGAGAGATGTTCGAAAGCACTTGTCAAGGAGGCACTCCAACGAAACACCTGTGACAACCTGACTGTCGTCGTGGTGTGTTTCTCCAAAGACCCTCCTCCCAAGACTGAAATTCCTAGATCCCACAAGAGGAGGAGCATTTCAGCTGAAGGGTTGGACCTTCTCAAGGGTGTCTTGAGTAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

391

Amino Acids

42.16

Weight (kDa)

5.61

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 97 - 348 2.4e-70 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 471
Acc65I GGTACC 1 cut(s) 584
AccB1I GGYRCC 1 cut(s) 584
AccII CGCG 2 cut(s) 163, 790
AciI CCGC 3 cut(s) 158, 161, 163
AclWI GGATC 2 cut(s) 977, 1098
AcoI YGGCCR 1 cut(s) 772
AcsI RAATTY 2 cut(s) 232, 1095
AcuI CTGAAG 2 cut(s) 237, 1152
AfaI GTAC 2 cut(s) 586, 712
AfeI AGCGCT 1 cut(s) 526
AfiI CCNNNNNNNGG 4 cut(s) 97, 395, 1113, 1150
AflII CTTAAG 1 cut(s) 841
AgsI TTSAA 5 cut(s) 20, 244, 482, 683, 831
AluBI AGCT 8 cut(s) 195, 297, 653, 739, 846, 868, 967, 1130
AluI AGCT 8 cut(s) 195, 297, 653, 739, 846, 868, 967, 1130
Alw21I GWGCWC 2 cut(s) 796, 969
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 2 cut(s) 977, 1098
Aor51HI AGCGCT 1 cut(s) 526
AoxI GGCC 1 cut(s) 772
ApeKI GCWGC 3 cut(s) 71, 440, 933
ApoI RAATTY 2 cut(s) 232, 1095
Asp718I GGTACC 1 cut(s) 584
AspLEI GCGC 2 cut(s) 527, 790
AspS9I GGNCC 2 cut(s) 311, 1141
AsuHPI GGTGA 4 cut(s) 46, 383, 653, 812
AsuII TTCGAA 2 cut(s) 134, 998
AvaII GGWCC 2 cut(s) 311, 1141
BalI TGGCCA 1 cut(s) 774
BanI GGYRCC 1 cut(s) 584
BanII GRGCYC 2 cut(s) 821, 969
Bbv12I GWGCWC 2 cut(s) 796, 969
BbvI GCAGC 3 cut(s) 58, 427, 945
BccI CCATC 3 cut(s) 413, 752, 905
BciVI GTATCC 1 cut(s) 755
BclI TGATCA 2 cut(s) 541, 897
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 3 cut(s) 192, 519, 1101
BfoI RGCGCY 1 cut(s) 528
BfrI CTTAAG 1 cut(s) 841
BfuAI ACCTGC 1 cut(s) 471
BfuI GTATCC 1 cut(s) 755
BglII AGATCT 1 cut(s) 223
BisI GCNGC 5 cut(s) 72, 158, 161, 441, 934
BlsI GCNGC 5 cut(s) 73, 159, 162, 442, 935
Bme18I GGWCC 2 cut(s) 311, 1141
BmgT120I GGNCC 2 cut(s) 311, 1141
BmiI GGNNCC 3 cut(s) 586, 820, 852
BmsI GCATC 4 cut(s) 427, 452, 490, 547
BoxI GACNNNNGTC 1 cut(s) 1052
Bpu14I TTCGAA 2 cut(s) 134, 998
BpuEI CTTGAG 2 cut(s) 377, 1133
BsaBI GATNNNNATC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 96, 161
BsaXI ACNNNNNCTCC 2 cut(s) 842, 872
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 395, 1113, 1150
Bse1I ACTGG 2 cut(s) 809, 937
Bse3DI GCAATG 2 cut(s) 81, 184
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 96, 161
BseGI GGATG 2 cut(s) 911, 928
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 4 cut(s) 97, 395, 1113, 1150
BseMI GCAATG 2 cut(s) 81, 184
BseMII CTCAG 2 cut(s) 44, 978
BseNI ACTGG 2 cut(s) 809, 937
BseRI GAGGAG 4 cut(s) 878, 1071, 1129, 1132
BseXI GCAGC 3 cut(s) 58, 427, 945
BseYI CCCAGC 1 cut(s) 739
BsgI GTGCAG 1 cut(s) 963
Bsh1236I CGCG 2 cut(s) 163, 790
BshFI GGCC 1 cut(s) 774
BshNI GGYRCC 1 cut(s) 584
BsiHKAI GWGCWC 2 cut(s) 796, 969
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 4 cut(s) 97, 395, 1113, 1150
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 375
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 1 cut(s) 774
Bsp119I TTCGAA 2 cut(s) 134, 998
Bsp1286I GDGCHC 3 cut(s) 796, 821, 969
Bsp143I GATC 8 cut(s) 103, 223, 352, 541, 694, 897, 982, 1103
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 3 cut(s) 158, 161, 163
BspANI GGCC 1 cut(s) 774
BspCNI CTCAG 2 cut(s) 43, 979
BspFNI CGCG 2 cut(s) 163, 790
BspLI GGNNCC 3 cut(s) 586, 820, 852
BspMI ACCTGC 1 cut(s) 471
BspPI GGATC 2 cut(s) 977, 1098
BspT104I TTCGAA 2 cut(s) 134, 998
BspT107I GGYRCC 1 cut(s) 584
BspTI CTTAAG 1 cut(s) 841
BsrDI GCAATG 2 cut(s) 81, 184
BsrI ACTGG 2 cut(s) 809, 937
BssECI CCNNGG 2 cut(s) 96, 161
BssMI GATC 8 cut(s) 103, 223, 352, 541, 694, 897, 982, 1103
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 321, 1051
BstAFI CTTAAG 1 cut(s) 841
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBI TTCGAA 2 cut(s) 134, 998
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 3 cut(s) 30, 610, 987
BstDSI CCRYGG 2 cut(s) 96, 161
BstENI CCTNNNNNAGG 1 cut(s) 1148
BstF5I GGATG 2 cut(s) 911, 928
BstFNI CGCG 2 cut(s) 163, 790
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 2 cut(s) 527, 790
BstKTI GATC 8 cut(s) 106, 226, 355, 544, 697, 900, 985, 1106
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 8 cut(s) 103, 223, 352, 541, 694, 897, 982, 1103
BstMWI GCNNNNNNNGC 4 cut(s) 80, 545, 599, 843
BstNSI RCATGY 1 cut(s) 625
BstPAI GACNNNNGTC 1 cut(s) 1052
BstUI CGCG 2 cut(s) 163, 790
BstV1I GCAGC 3 cut(s) 58, 427, 945
BstX2I RGATCY 2 cut(s) 223, 1103
BstYI RGATCY 2 cut(s) 223, 1103
BsuI GTATCC 1 cut(s) 755
BsuRI GGCC 1 cut(s) 774
BtgI CCRYGG 2 cut(s) 96, 161
BtsCI GGATG 2 cut(s) 911, 928
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 3 cut(s) 588, 789, 944
BveI ACCTGC 1 cut(s) 471
Cac8I GCNNGC 1 cut(s) 792
CfoI GCGC 2 cut(s) 527, 790
Cfr13I GGNCC 2 cut(s) 311, 1141
Cfr42I CCGCGG 1 cut(s) 164
Csp6I GTAC 2 cut(s) 585, 711
CviAII CATG 7 cut(s) 97, 395, 425, 545, 622, 901, 970
CviQI GTAC 2 cut(s) 585, 711
DdeI CTNAG 3 cut(s) 30, 610, 987
DpnI GATC 8 cut(s) 105, 225, 354, 543, 696, 899, 984, 1105
DpnII GATC 8 cut(s) 103, 223, 352, 541, 694, 897, 982, 1103
EaeI YGGCCR 1 cut(s) 772
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 2 cut(s) 821, 969
Eco47I GGWCC 2 cut(s) 311, 1141
Eco47III AGCGCT 1 cut(s) 526
Eco53kI GAGCTC 1 cut(s) 967
Eco57I CTGAAG 2 cut(s) 237, 1152
EcoICRI GAGCTC 1 cut(s) 967
EcoNI CCTNNNNNAGG 1 cut(s) 1148
EcoO109I RGGNCCY 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 2 cut(s) 821, 969
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 7 cut(s) 100, 398, 428, 548, 625, 904, 973
FalI AAGNNNNNCTT 3 cut(s) 132, 164, 1142
FaqI GGGAC 1 cut(s) 375
FatI CATG 7 cut(s) 96, 394, 424, 544, 621, 900, 969
FbaI TGATCA 2 cut(s) 541, 897
Fnu4HI GCNGC 5 cut(s) 72, 158, 161, 441, 934
FokI GGATG 2 cut(s) 918, 935
FriOI GRGCYC 2 cut(s) 821, 969
Fsp4HI GCNGC 5 cut(s) 72, 158, 161, 441, 934
FspBI CTAG 3 cut(s) 192, 519, 1101
GlaI GCGC 2 cut(s) 526, 789
GluI GCNGC 5 cut(s) 72, 158, 161, 441, 934
GsaI CCCAGC 1 cut(s) 743
HaeII RGCGCY 1 cut(s) 528
HaeIII GGCC 1 cut(s) 774
HhaI GCGC 2 cut(s) 527, 790
Hin1II CATG 7 cut(s) 100, 398, 428, 548, 625, 904, 973
Hin6I GCGC 2 cut(s) 525, 788
HinP1I GCGC 2 cut(s) 525, 788
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 6 cut(s) 28, 136, 212, 218, 374, 485
HphI GGTGA 4 cut(s) 46, 383, 653, 812
Hpy166II GTNNAC 2 cut(s) 127, 382
Hpy188I TCNGA 6 cut(s) 217, 223, 268, 304, 718, 850
Hpy188III TCNNGA 7 cut(s) 12, 356, 482, 569, 895, 986, 1159
Hpy8I GTNNAC 2 cut(s) 127, 382
Hpy99I CGWCG 1 cut(s) 1058
HpyAV CCTTC 7 cut(s) 261, 399, 529, 609, 666, 1127, 1154
HpyCH4III ACNGT 2 cut(s) 321, 1051
HpyCH4V TGCA 9 cut(s) 74, 189, 200, 230, 443, 548, 554, 944, 973
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 545, 599, 843
HpyF3I CTNAG 3 cut(s) 30, 610, 987
Hsp92II CATG 7 cut(s) 100, 398, 428, 548, 625, 904, 973
HspAI GCGC 2 cut(s) 525, 788
KpnI GGTACC 1 cut(s) 588
Ksp22I TGATCA 2 cut(s) 541, 897
KspI CCGCGG 1 cut(s) 164
Kzo9I GATC 8 cut(s) 103, 223, 352, 541, 694, 897, 982, 1103
LmnI GCTCC 7 cut(s) 88, 294, 824, 850, 865, 964, 1119
Lsp1109I GCAGC 3 cut(s) 58, 427, 945
LweI GCATC 4 cut(s) 427, 452, 490, 547
MaeI CTAG 3 cut(s) 192, 519, 1101
MaeIII GTNAC 4 cut(s) 800, 946, 1037, 1163
MalI GATC 8 cut(s) 105, 225, 354, 543, 696, 899, 984, 1105
MboI GATC 8 cut(s) 103, 223, 352, 541, 694, 897, 982, 1103
MboII GAAGA 4 cut(s) 113, 341, 893, 896
MfeI CAATTG 2 cut(s) 549, 678
MflI RGATCY 2 cut(s) 223, 1103
MhlI GDGCHC 3 cut(s) 796, 821, 969
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 8 cut(s) 130, 232, 469, 549, 678, 706, 729, 1095
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 2 cut(s) 22, 479
MmeI TCCRAC 3 cut(s) 840, 1048, 1119
Mox20I TGGCCA 1 cut(s) 774
MscI TGGCCA 1 cut(s) 774
MseI TTAA 5 cut(s) 59, 468, 507, 725, 842
MslI CAYNNNNRTG 3 cut(s) 205, 369, 429
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 2 cut(s) 163, 1130
MspCI CTTAAG 1 cut(s) 841
MunI CAATTG 2 cut(s) 549, 678
Mva1269I GAATGC 1 cut(s) 200
MvnI CGCG 2 cut(s) 163, 790
MwoI GCNNNNNNNGC 4 cut(s) 80, 545, 599, 843
NcoI CCATGG 1 cut(s) 96
NdeII GATC 8 cut(s) 103, 223, 352, 541, 694, 897, 982, 1103
NlaIII CATG 7 cut(s) 100, 398, 428, 548, 625, 904, 973
NlaIV GGNNCC 3 cut(s) 586, 820, 852
NmuCI GTSAC 2 cut(s) 800, 1037
NspI RCATGY 1 cut(s) 625
NspV TTCGAA 2 cut(s) 134, 998
PctI GAATGC 1 cut(s) 200
PfeI GAWTC 4 cut(s) 136, 212, 218, 374
PkrI GCNGC 5 cut(s) 73, 159, 162, 442, 935
PleI GAGTC 2 cut(s) 22, 479
PpsI GAGTC 2 cut(s) 22, 479
PpuMI RGGWCCY 1 cut(s) 311
PshAI GACNNNNGTC 1 cut(s) 1052
Psp124BI GAGCTC 1 cut(s) 969
Psp5II RGGWCCY 1 cut(s) 311
PspFI CCCAGC 1 cut(s) 739
PspN4I GGNNCC 3 cut(s) 586, 820, 852
PspPI GGNCC 2 cut(s) 311, 1141
PspPPI RGGWCCY 1 cut(s) 311
PsuI RGATCY 2 cut(s) 223, 1103
PvuII CAGCTG 1 cut(s) 1130
RsaI GTAC 2 cut(s) 586, 712
RsaNI GTAC 2 cut(s) 585, 711
RseI CAYNNNNRTG 3 cut(s) 205, 369, 429
SacI GAGCTC 1 cut(s) 969
SacII CCGCGG 1 cut(s) 164
SaqAI TTAA 5 cut(s) 59, 468, 507, 725, 842
SatI GCNGC 5 cut(s) 72, 158, 161, 441, 934
Sau3AI GATC 8 cut(s) 103, 223, 352, 541, 694, 897, 982, 1103
Sau96I GGNCC 2 cut(s) 311, 1141
SchI GAGTC 2 cut(s) 22, 479
SduI GDGCHC 3 cut(s) 796, 821, 969
SfaNI GCATC 4 cut(s) 427, 452, 490, 547
Sfr303I CCGCGG 1 cut(s) 164
SfuI TTCGAA 2 cut(s) 134, 998
SgrBI CCGCGG 1 cut(s) 164
SinI GGWCC 2 cut(s) 311, 1141
SmiMI CAYNNNNRTG 3 cut(s) 205, 369, 429
SmlI CTYRAG 4 cut(s) 356, 841, 1148, 1159
SmoI CTYRAG 4 cut(s) 356, 841, 1148, 1159
Sse9I AATT 8 cut(s) 130, 232, 469, 549, 678, 706, 729, 1095
SsiI CCGC 3 cut(s) 158, 161, 163
SspMI CTAG 3 cut(s) 192, 519, 1101
SstI GAGCTC 1 cut(s) 969
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 321, 1051
TaqI TCGA 4 cut(s) 26, 134, 649, 998
TasI AATT 8 cut(s) 130, 232, 469, 549, 678, 706, 729, 1095
TauI GCSGC 2 cut(s) 160, 163
TfiI GAWTC 4 cut(s) 136, 212, 218, 374
Tru1I TTAA 5 cut(s) 59, 468, 507, 725, 842
Tru9I TTAA 5 cut(s) 59, 468, 507, 725, 842
TscAI CASTG 3 cut(s) 595, 789, 944
TseFI GTSAC 2 cut(s) 800, 1037
TseI GCWGC 3 cut(s) 71, 440, 933
Tsp45I GTSAC 2 cut(s) 800, 1037
TspDTI ATGAA 2 cut(s) 439, 463
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 3 cut(s) 595, 789, 944
Vha464I CTTAAG 1 cut(s) 841
VpaK11BI GGWCC 2 cut(s) 311, 1141
XagI CCTNNNNNAGG 1 cut(s) 1148
XapI RAATTY 2 cut(s) 232, 1095
XceI RCATGY 1 cut(s) 625
XspI CTAG 3 cut(s) 192, 519, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.