Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8356493.1

Orthogroup ID

OG0008979

Physical Location & Seq

Genomic Coordinates Reverse (-)

410 .. 961

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8356493.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgctaatcgctaatgctggtgattgtcgagctgtattggggaagcgcggaagagcaattgaactatctaaagatcacaaacctaattgcacctctgaaagattaagaatcgagaagctgggtggtgtcatctatgatggatacctcaatggccaactatcagtggcgcgtgctcttggagactggcatatcaagggttcgaaaggttcaaactgccccttaagctctgagccagagttggaggaaattgtcctaaccgaggaggatgaattcttgataatgggatgtgatggcttgtgggatgtgatgagcagccagtgtgctgtcacaatggtaagaaaggagctcatgcagcataatgatcctgagagatgttcgaaagtacttgtcaaggaggcactccaacgaaacacatgtgacaacctgactgtagtggtggtgtgtttctccgaagaccctcctcctaagaccgaaattcctaaatcccacaagaggaggagcatttcagctgaagggttggaccttctcaagggtgtcttgagcagcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

183

Amino Acids

20.18

Weight (kDa)

5.85

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51470 AT3G51470
fragaria_vesca	FvH4_1g10220 FvH4_1g10220 FvH4_1g10220 FvH4_1g10220
malus_domestica	MD02G1114200.v1.1 MD15G1229800.v1.1
prunus_persica	Prupe.7G184000_v2.0.a1
pyrus_communis	pycom02g08910 pycom15g20500
rosa_chinensis	RchiOBHm_Chr2g0097041
rosa_laevigata	RLG00000016697
rosa_multiflora	Rmu_co8356493.1_g000001 Rmu_sc0006853.1_g000004
rosa_roxburghii	Rroxscaffold_2G00145030
rosa_rugosa	Rorug02G0063100
rosa_samantha	Rh2AG110700 Rh2BG112600 Rh2CG114800 Rh2DG114000
rosa_wichuraiana	Rw2G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	48, 169
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	2 cut(s)	269, 474
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	3 cut(s)	259, 492, 529
AflII	CTTAAG	1 cut(s)	220
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	62, 210
AluBI	AGCT	5 cut(s)	32, 118, 225, 346, 509
AluI	AGCT	5 cut(s)	32, 118, 225, 346, 509
Alw21I	GWGCWC	2 cut(s)	175, 348
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	356
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	3 cut(s)	312, 352, 543
ApoI	RAATTY	2 cut(s)	269, 474
AspLEI	GCGC	2 cut(s)	48, 169
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	32
AsuII	TTCGAA	2 cut(s)	200, 377
AvaII	GGWCC	1 cut(s)	520
BalI	TGGCCA	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	2 cut(s)	175, 348
BbvI	GCAGC	2 cut(s)	324, 364
BccI	CCATC	2 cut(s)	131, 284
BciVI	GTATCC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	429
BfrI	CTTAAG	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	313, 353, 544
BlsI	GCNGC	3 cut(s)	314, 354, 545
BmcAI	AGTACT	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BpiI	GAAGAC	1 cut(s)	459
Bpu14I	TTCGAA	2 cut(s)	200, 377
BpuEI	CTTGAG	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 492, 529
Bse1I	ACTGG	2 cut(s)	188, 316
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	271, 290, 307
BseLI	CCNNNNNNNGG	3 cut(s)	259, 492, 529
BseMII	CTCAG	2 cut(s)	219, 357
BseNI	ACTGG	2 cut(s)	188, 316
BseRI	GAGGAG	4 cut(s)	275, 450, 508, 511
BseXI	GCAGC	2 cut(s)	324, 364
BseYI	CCCAGC	1 cut(s)	118
Bsh1236I	CGCG	2 cut(s)	48, 169
BshFI	GGCC	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	175, 348
BslI	CCNNNNNNNGG	3 cut(s)	259, 492, 529
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	153
Bsp119I	TTCGAA	2 cut(s)	200, 377
Bsp1286I	GDGCHC	2 cut(s)	175, 348
Bsp143I	GATC	2 cut(s)	73, 361
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	2 cut(s)	220, 358
BspFNI	CGCG	2 cut(s)	48, 169
BspPI	GGATC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	46
BspT104I	TTCGAA	2 cut(s)	200, 377
BspTI	CTTAAG	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	188, 316
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	73, 361
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	46
BstAFI	CTTAAG	1 cut(s)	220
BstBI	TTCGAA	2 cut(s)	200, 377
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	3 cut(s)	228, 366, 465
BstENI	CCTNNNNNAGG	2 cut(s)	257, 527
BstF5I	GGATG	3 cut(s)	271, 290, 307
BstFNI	CGCG	2 cut(s)	48, 169
BstHHI	GCGC	2 cut(s)	48, 169
BstKTI	GATC	2 cut(s)	76, 364
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	73, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 352
BstNSI	RCATGY	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	2 cut(s)	48, 169
BstV1I	GCAGC	2 cut(s)	324, 364
BstV2I	GAAGAC	1 cut(s)	459
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	271, 290, 307
BtsIMutI	CAGTG	2 cut(s)	168, 323
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	2 cut(s)	48, 169
Cfr13I	GGNCC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	2 cut(s)	349, 414
CviJI	RGCY	9 cut(s)	32, 118, 153, 225, 232, 294, 315, 346, 509
CviKI_1	RGCY	9 cut(s)	32, 118, 153, 225, 232, 294, 315, 346, 509
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	3 cut(s)	228, 366, 465
DpnI	GATC	2 cut(s)	75, 363
DpnII	GATC	2 cut(s)	73, 361
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	346
EcoNI	CCTNNNNNAGG	2 cut(s)	257, 527
EcoRI	GAATTC	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	348
FaeI	CATG	2 cut(s)	352, 417
FaiI	YATR	5 cut(s)	135, 189, 350, 357, 415
FalI	AAGNNNNNCTT	1 cut(s)	521
FatI	CATG	2 cut(s)	348, 413
Fnu4HI	GCNGC	3 cut(s)	313, 353, 544
FokI	GGATG	3 cut(s)	278, 297, 314
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	3 cut(s)	313, 353, 544
GlaI	GCGC	2 cut(s)	47, 168
GluI	GCNGC	3 cut(s)	313, 353, 544
GsaI	CCCAGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	153
HhaI	GCGC	2 cut(s)	48, 169
Hin1II	CATG	2 cut(s)	352, 417
Hin6I	GCGC	2 cut(s)	46, 167
HinP1I	GCGC	2 cut(s)	46, 167
HinfI	GANTC	1 cut(s)	108
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	3 cut(s)	97, 229, 451
Hpy188III	TCNNGA	4 cut(s)	112, 274, 365, 538
HpyAV	CCTTC	2 cut(s)	506, 533
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4V	TGCA	2 cut(s)	90, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 352
HpyF3I	CTNAG	3 cut(s)	228, 366, 465
Hsp92II	CATG	2 cut(s)	352, 417
HspAI	GCGC	2 cut(s)	46, 167
Kzo9I	GATC	2 cut(s)	73, 361
LguI	GCTCTTC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	343, 498
LpnPI	CCDG	7 cut(s)	3, 104, 169, 246, 329, 378, 437
Lsp1109I	GCAGC	2 cut(s)	324, 364
MaeIII	GTNAC	2 cut(s)	325, 416
MalI	GATC	2 cut(s)	75, 363
MboI	GATC	2 cut(s)	73, 361
MboII	GAAGA	2 cut(s)	63, 464
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	175, 348
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	5 cut(s)	57, 85, 246, 269, 474
MluNI	TGGCCA	1 cut(s)	153
MmeI	TCCRAC	3 cut(s)	219, 427, 498
Mox20I	TGGCCA	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	2 cut(s)	104, 221
Msp20I	TGGCCA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	509
MspCI	CTTAAG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	57
MvnI	CGCG	2 cut(s)	48, 169
MwoI	GCNNNNNNNGC	2 cut(s)	222, 352
NdeII	GATC	2 cut(s)	73, 361
NlaIII	CATG	2 cut(s)	352, 417
NmuCI	GTSAC	2 cut(s)	325, 416
NspI	RCATGY	1 cut(s)	417
NspV	TTCGAA	2 cut(s)	200, 377
PciI	ACATGT	1 cut(s)	413
PciSI	GCTCTTC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	314, 354, 545
PscI	ACATGT	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	104, 221
SatI	GCNGC	3 cut(s)	313, 353, 544
Sau3AI	GATC	2 cut(s)	73, 361
Sau96I	GGNCC	1 cut(s)	520
ScaI	AGTACT	1 cut(s)	384
SduI	GDGCHC	2 cut(s)	175, 348
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	2 cut(s)	200, 377
SinI	GGWCC	1 cut(s)	520
SmlI	CTYRAG	3 cut(s)	220, 527, 538
SmoI	CTYRAG	3 cut(s)	220, 527, 538
Sse9I	AATT	5 cut(s)	57, 85, 246, 269, 474
SsiI	CCGC	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	430
TaqI	TCGA	4 cut(s)	28, 111, 200, 377
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	5 cut(s)	57, 85, 246, 269, 474
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	2 cut(s)	104, 221
Tru9I	TTAA	2 cut(s)	104, 221
TscAI	CASTG	2 cut(s)	168, 323
TseFI	GTSAC	2 cut(s)	325, 416
TseI	GCWGC	3 cut(s)	312, 352, 543
Tsp45I	GTSAC	2 cut(s)	325, 416
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	168, 323
Vha464I	CTTAAG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	520
XagI	CCTNNNNNAGG	2 cut(s)	257, 527
XapI	RAATTY	2 cut(s)	269, 474
XceI	RCATGY	1 cut(s)	417
ZrmI	AGTACT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.