Rh2BG112600

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008979
Physical Location & Seq
Forward (+)
9553874 .. 9556398
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG112600.1

Sequence Viewer

Length: 849 bp
ATGGAAGATGAGTATATTTGTGTAGATGATCTTGAGGAACATCTTGGTGCTTCAGTAAACTTGCCTTCTCATGGGGCATTTTATGGGGTCTTTGATGGACACGGTGGTGTTGATGCAGCATCATTCATAAAAAAGAATCTCCTTAATTTCATTGTTCAAGACACTCATTTCCCAAATGGCCCTAAAAAAGCAATTAGGAGCGCTTTTGTGAAGGCTGATCATGCATTTGCAGATGCTACCTCTCTTGATAAGTCCTCCGGTACTACTGCTTTGACTGCCCTTATCTTAGGAAGGAACATGCTAATCGCTAATGCTGGTGATTGTCGAGCTGTATTGGGGAAGCGCGGAAGAGCAATTGAACTATCTAAAGATCACAAACCTAATTGCACCTCTGAAAGATTAAGAATCGAGAAGCTGGGTGGTGTCATCTATGATGGATACCTCAATGGCCAACTATCAGTGGCGCGTGCTCTTGGAGACTGGCATATCAAGGGTTCTAAAGGTTCAAACTGCCCCTTAAGCTCTGAGCCAGAGTTGGAGGAAATTGTCCTAACCGAGGAGGATGAATTCTTGATAATGGGATGTGATGGCTTGTGGGATGTGATGAGCAGCCAGTGTGCTGTCACAATGGTAAGAAAGGAGCTCATGCAGCATAATGATCCTGAGAGATGTTCGAAAGTACTTGTGAAGGAGGCGCTCCAACGAAACACATGTGACAACCTGACTGTAGTGGTGGTGTGTTTCTCCGAAGACCCTCCTCCTAAGACCGAAATTCCTAAATCCCACAAGAGGAGGAGCATTTCAGCTGAAGGGTTGGACCTTCTCAAGGGTGTCTTGAGCAGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

282

Amino Acids

30.74

Weight (kDa)

5.62

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 1 - 240 2.7e-70 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 345, 466
AciI CCGC 1 cut(s) 345
AclWI GGATC 1 cut(s) 653
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 2 cut(s) 566, 771
AcuI CTGAAG 2 cut(s) 36, 828
AfaI GTAC 2 cut(s) 262, 681
AfeI AGCGCT 1 cut(s) 202
AfiI CCNNNNNNNGG 4 cut(s) 71, 556, 789, 826
AflII CTTAAG 1 cut(s) 517
AflIII ACRYGT 1 cut(s) 710
AgsI TTSAA 3 cut(s) 158, 359, 507
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 5 cut(s) 329, 415, 522, 643, 806
AluI AGCT 5 cut(s) 329, 415, 522, 643, 806
Alw21I GWGCWC 2 cut(s) 472, 645
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 1 cut(s) 653
Aor51HI AGCGCT 1 cut(s) 202
AoxI GGCC 2 cut(s) 178, 448
ApeKI GCWGC 4 cut(s) 116, 609, 649, 840
ApoI RAATTY 2 cut(s) 566, 771
AspLEI GCGC 4 cut(s) 203, 345, 466, 697
AspS9I GGNCC 2 cut(s) 179, 817
AsuHPI GGTGA 1 cut(s) 329
AsuII TTCGAA 1 cut(s) 674
AvaII GGWCC 1 cut(s) 817
BalI TGGCCA 1 cut(s) 450
BanII GRGCYC 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 2 cut(s) 472, 645
BbvI GCAGC 3 cut(s) 128, 621, 661
BccI CCATC 3 cut(s) 89, 428, 581
BciVI GTATCC 1 cut(s) 431
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 726
BfoI RGCGCY 2 cut(s) 204, 698
BfrI CTTAAG 1 cut(s) 517
BfuI GTATCC 1 cut(s) 431
BisI GCNGC 4 cut(s) 117, 610, 650, 841
BlsI GCNGC 4 cut(s) 118, 611, 651, 842
BmcAI AGTACT 1 cut(s) 681
Bme18I GGWCC 1 cut(s) 817
BmgT120I GGNCC 2 cut(s) 179, 817
BmsI GCATC 3 cut(s) 103, 128, 223
BpiI GAAGAC 1 cut(s) 756
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 53, 809
BsaJI CCNNGG 1 cut(s) 555
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 556, 789, 826
Bse1I ACTGG 2 cut(s) 485, 613
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 3 cut(s) 568, 587, 604
BseLI CCNNNNNNNGG 4 cut(s) 71, 556, 789, 826
BseMII CTCAG 2 cut(s) 516, 654
BseNI ACTGG 2 cut(s) 485, 613
BseRI GAGGAG 4 cut(s) 572, 747, 805, 808
BseXI GCAGC 3 cut(s) 128, 621, 661
BseYI CCCAGC 1 cut(s) 415
Bsh1236I CGCG 2 cut(s) 345, 466
BshFI GGCC 2 cut(s) 180, 450
BsiHKAI GWGCWC 2 cut(s) 472, 645
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 4 cut(s) 71, 556, 789, 826
BsmAI GTCTC 1 cut(s) 471
BsnI GGCC 2 cut(s) 180, 450
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 2 cut(s) 472, 645
Bsp143I GATC 4 cut(s) 28, 217, 370, 658
BspACI CCGC 1 cut(s) 345
BspANI GGCC 2 cut(s) 180, 450
BspCNI CTCAG 2 cut(s) 517, 655
BspFNI CGCG 2 cut(s) 345, 466
BspPI GGATC 1 cut(s) 653
BspQI GCTCTTC 1 cut(s) 343
BspT104I TTCGAA 1 cut(s) 674
BspTI CTTAAG 1 cut(s) 517
BsrI ACTGG 2 cut(s) 485, 613
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 4 cut(s) 28, 217, 370, 658
Bst4CI ACNGT 2 cut(s) 104, 727
Bst6I CTCTTC 1 cut(s) 343
BstAFI CTTAAG 1 cut(s) 517
BstBI TTCGAA 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 4 cut(s) 286, 525, 663, 762
BstENI CCTNNNNNAGG 2 cut(s) 554, 824
BstF5I GGATG 3 cut(s) 568, 587, 604
BstFNI CGCG 2 cut(s) 345, 466
BstH2I RGCGCY 2 cut(s) 204, 698
BstHHI GCGC 4 cut(s) 203, 345, 466, 697
BstKTI GATC 4 cut(s) 31, 220, 373, 661
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 4 cut(s) 28, 217, 370, 658
BstMWI GCNNNNNNNGC 4 cut(s) 221, 275, 519, 649
BstNSI RCATGY 2 cut(s) 301, 714
BstSFI CTRYAG 1 cut(s) 726
BstUI CGCG 2 cut(s) 345, 466
BstV1I GCAGC 3 cut(s) 128, 621, 661
BstV2I GAAGAC 1 cut(s) 756
BsuI GTATCC 1 cut(s) 431
BsuRI GGCC 2 cut(s) 180, 450
BtsCI GGATG 3 cut(s) 568, 587, 604
BtsIMutI CAGTG 2 cut(s) 465, 620
Cac8I GCNNGC 1 cut(s) 468
CfoI GCGC 4 cut(s) 203, 345, 466, 697
Cfr13I GGNCC 2 cut(s) 179, 817
Csp6I GTAC 2 cut(s) 261, 680
CviAII CATG 5 cut(s) 71, 221, 298, 646, 711
CviQI GTAC 2 cut(s) 261, 680
DdeI CTNAG 4 cut(s) 286, 525, 663, 762
DpnI GATC 4 cut(s) 30, 219, 372, 660
DpnII GATC 4 cut(s) 28, 217, 370, 658
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
Ecl136II GAGCTC 1 cut(s) 643
Eco24I GRGCYC 1 cut(s) 645
Eco47I GGWCC 1 cut(s) 817
Eco47III AGCGCT 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 643
Eco57I CTGAAG 2 cut(s) 36, 828
EcoICRI GAGCTC 1 cut(s) 643
EcoNI CCTNNNNNAGG 2 cut(s) 554, 824
EcoRI GAATTC 1 cut(s) 566
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 645
FaeI CATG 5 cut(s) 74, 224, 301, 649, 714
FalI AAGNNNNNCTT 1 cut(s) 818
FatI CATG 5 cut(s) 70, 220, 297, 645, 710
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 4 cut(s) 117, 610, 650, 841
FokI GGATG 3 cut(s) 575, 594, 611
FriOI GRGCYC 1 cut(s) 645
Fsp4HI GCNGC 4 cut(s) 117, 610, 650, 841
GlaI GCGC 4 cut(s) 202, 344, 465, 696
GluI GCNGC 4 cut(s) 117, 610, 650, 841
GsaI CCCAGC 1 cut(s) 419
HaeII RGCGCY 2 cut(s) 204, 698
HaeIII GGCC 2 cut(s) 180, 450
HapII CCGG 1 cut(s) 258
HhaI GCGC 4 cut(s) 203, 345, 466, 697
Hin1II CATG 5 cut(s) 74, 224, 301, 649, 714
Hin6I GCGC 4 cut(s) 201, 343, 464, 695
HinP1I GCGC 4 cut(s) 201, 343, 464, 695
HinfI GANTC 2 cut(s) 136, 405
HpaII CCGG 1 cut(s) 258
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 394, 526, 748
Hpy188III TCNNGA 7 cut(s) 32, 158, 245, 409, 571, 662, 835
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 6 cut(s) 75, 205, 285, 682, 803, 830
HpyCH4III ACNGT 2 cut(s) 104, 727
HpyCH4V TGCA 5 cut(s) 116, 224, 230, 387, 649
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 275, 519, 649
HpyF3I CTNAG 4 cut(s) 286, 525, 663, 762
Hsp92II CATG 5 cut(s) 74, 224, 301, 649, 714
HspAI GCGC 4 cut(s) 201, 343, 464, 695
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 4 cut(s) 28, 217, 370, 658
LguI GCTCTTC 1 cut(s) 343
LmnI GCTCC 4 cut(s) 198, 640, 702, 795
LpnPI CCDG 8 cut(s) 271, 300, 401, 466, 543, 626, 675, 734
Lsp1109I GCAGC 3 cut(s) 128, 621, 661
LweI GCATC 3 cut(s) 103, 128, 223
MaeIII GTNAC 2 cut(s) 622, 713
MalI GATC 4 cut(s) 30, 219, 372, 660
MboI GATC 4 cut(s) 28, 217, 370, 658
MboII GAAGA 3 cut(s) 17, 360, 761
MfeI CAATTG 1 cut(s) 354
MhlI GDGCHC 2 cut(s) 472, 645
MlsI TGGCCA 1 cut(s) 450
MluCI AATT 7 cut(s) 145, 192, 354, 382, 543, 566, 771
MluNI TGGCCA 1 cut(s) 450
MmeI TCCRAC 3 cut(s) 516, 724, 795
Mox20I TGGCCA 1 cut(s) 450
Mph1103I ATGCAT 1 cut(s) 226
MscI TGGCCA 1 cut(s) 450
MseI TTAA 3 cut(s) 144, 401, 518
MslI CAYNNNNRTG 2 cut(s) 45, 105
Msp20I TGGCCA 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 806
MspCI CTTAAG 1 cut(s) 517
MspI CCGG 1 cut(s) 258
MunI CAATTG 1 cut(s) 354
MvnI CGCG 2 cut(s) 345, 466
MwoI GCNNNNNNNGC 4 cut(s) 221, 275, 519, 649
NdeII GATC 4 cut(s) 28, 217, 370, 658
NlaIII CATG 5 cut(s) 74, 224, 301, 649, 714
NmuCI GTSAC 2 cut(s) 622, 713
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 2 cut(s) 301, 714
NspV TTCGAA 1 cut(s) 674
OliI CACNNNNGTG 1 cut(s) 105
PciI ACATGT 1 cut(s) 710
PciSI GCTCTTC 1 cut(s) 343
PfeI GAWTC 2 cut(s) 136, 405
PkrI GCNGC 4 cut(s) 118, 611, 651, 842
PscI ACATGT 1 cut(s) 710
Psp124BI GAGCTC 1 cut(s) 645
PspFI CCCAGC 1 cut(s) 415
PspPI GGNCC 2 cut(s) 179, 817
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 2 cut(s) 262, 681
RsaNI GTAC 2 cut(s) 261, 680
RseI CAYNNNNRTG 2 cut(s) 45, 105
SacI GAGCTC 1 cut(s) 645
SapI GCTCTTC 1 cut(s) 343
SaqAI TTAA 3 cut(s) 144, 401, 518
SatI GCNGC 4 cut(s) 117, 610, 650, 841
Sau3AI GATC 4 cut(s) 28, 217, 370, 658
Sau96I GGNCC 2 cut(s) 179, 817
ScaI AGTACT 1 cut(s) 681
SduI GDGCHC 2 cut(s) 472, 645
SfaNI GCATC 3 cut(s) 103, 128, 223
SfcI CTRYAG 1 cut(s) 726
SfuI TTCGAA 1 cut(s) 674
SinI GGWCC 1 cut(s) 817
SmiMI CAYNNNNRTG 2 cut(s) 45, 105
SmlI CTYRAG 4 cut(s) 32, 517, 824, 835
SmoI CTYRAG 4 cut(s) 32, 517, 824, 835
Sse9I AATT 7 cut(s) 145, 192, 354, 382, 543, 566, 771
SsiI CCGC 1 cut(s) 345
SstI GAGCTC 1 cut(s) 645
TaaI ACNGT 2 cut(s) 104, 727
TaqI TCGA 3 cut(s) 325, 408, 674
TaqII GACCGA 1 cut(s) 782
TasI AATT 7 cut(s) 145, 192, 354, 382, 543, 566, 771
TatI WGTACW 1 cut(s) 679
TfiI GAWTC 2 cut(s) 136, 405
Tru1I TTAA 3 cut(s) 144, 401, 518
Tru9I TTAA 3 cut(s) 144, 401, 518
TscAI CASTG 2 cut(s) 465, 620
TseFI GTSAC 2 cut(s) 622, 713
TseI GCWGC 4 cut(s) 116, 609, 649, 840
Tsp45I GTSAC 2 cut(s) 622, 713
TspDTI ATGAA 3 cut(s) 115, 139, 579
TspRI CASTG 2 cut(s) 465, 620
Vha464I CTTAAG 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 817
XagI CCTNNNNNAGG 2 cut(s) 554, 824
XapI RAATTY 2 cut(s) 566, 771
XceI RCATGY 2 cut(s) 301, 714
ZrmI AGTACT 1 cut(s) 681
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.