Prupe.7G184000_v2.0.a1

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0008979
Physical Location & Seq
Reverse (-)
17845383 .. 17848768
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G184000.1

Sequence Viewer

Length: 1155 bp
ATGGCTTCAGGAACTGCAGATATCTCGCCTCATGTAACCAGATTGGATGGTGGGTGCTTAAACGATGGTGGTATACCTATCATGGAGGATCAAAATGTTGATGCTTTGGGAAATTCGAACAACGTTCCTACTGGAAAGCCTCCAAGAAACCTCTCAGTTATGCGGAATTGCACAAGCTATGCATTGTTGACCGAATCAGAATCAGATATTGGAAGTATGGGCTTGAAGTCACCAGCAAGTGAGACGGCAGAGTTCGTGTCTGTATTCCGTTCAGGAAGCTGTTCTGAAAAAGGACCTAAACAATACATGGAGGATGAGTATATTTGTGTAGATGATCTTCATGAACATCTTGGTCAAATGGAAAACTTGCCTTCTCCTGGGGCATTTTATGGGGTCTTTGACGGACACAATGGTGTTGATGCAGCATCGTTTATTAAAAAAAACATCCTTAGATTCATTGTTGAAGACTCTCACTTCCCATCAGGCATTAGAAAGGCAGTTAGGAGCGCCTTTGTGAAGGCTGATCATGCATTTGCAGATGCTAGCTCTGTTGATAAGTCCTCTGGTACCACTGCTTTGACTTCCCTTATTTTAGGAAGGACCATGCTAATCGCTAATGCTGGGGATTGTCGAGCTGTGTTGGGGAAGCGGGGAAGGGCAATTGAACTATCTAAAGATCACAAACCTAACTGCACCTCTGAAAGATTAAGAATTGAGAAGCTGGGCGGTGTCATCTATGATGGCTACCTCAATGGCCAACTATCAGTGGCACGTGCTCTTGGTGACTGGCATATCAAGGGCTCTAAAGGGTCAAACTGCCCCTTAAGCTCTGAGCCAGAATTGGAGGAAATTGTCCTAACGGAAGAAGATGAGTTCTTGATAATGGGCTGCGATGGCTTGTGGGATGTGATGAGCAGCCAGTGTGCAGTTACAATGGTAAGGAAGGAGCTCCTGCAGCATAACGATCCTGAGAGATGTTCAAAAGCGCTTGTCAAGGAGGCACTCCAACGAAACACATGCGATAACCTGACTGTTGTTGTGGTCTGTTTCTCCGAAGATCCACCTCCTAAAACCGAAATTCCTAAGTCCCAGAAGAGGAGAAGTATTTCAGCTGAAGGGTTGGACCTTCTCAAGGGTGTCTTAAGCAATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

385

Amino Acids

41.52

Weight (kDa)

5.31

Isoelectric Point (pI)

53.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 566
AccB1I GGYRCC 1 cut(s) 566
AccI GTMKAC 1 cut(s) 73
AciI CCGC 3 cut(s) 163, 649, 726
AclI AACGTT 1 cut(s) 123
AclWI GGATC 3 cut(s) 96, 959, 1052
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 2 cut(s) 112, 1077
AcuI CTGAAG 1 cut(s) 1134
AcvI CACGTG 1 cut(s) 773
AfaI GTAC 1 cut(s) 568
AfeI AGCGCT 1 cut(s) 987
AfiI CCNNNNNNNGG 3 cut(s) 377, 1095, 1132
AflII CTTAAG 2 cut(s) 823, 1141
AgsI TTSAA 4 cut(s) 226, 464, 665, 981
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 8 cut(s) 177, 279, 546, 635, 721, 828, 949, 1112
AluI AGCT 8 cut(s) 177, 279, 546, 635, 721, 828, 949, 1112
Alw21I GWGCWC 2 cut(s) 778, 951
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 3 cut(s) 96, 959, 1052
AlwNI CAGNNNCTG 1 cut(s) 14
Aor51HI AGCGCT 1 cut(s) 987
AoxI GGCC 1 cut(s) 754
ApeKI GCWGC 4 cut(s) 422, 888, 915, 955
ApoI RAATTY 2 cut(s) 112, 1077
Asp700I GAANNNNTTC 2 cut(s) 280, 1105
Asp718I GGTACC 1 cut(s) 566
AspLEI GCGC 2 cut(s) 509, 988
AspS9I GGNCC 3 cut(s) 293, 600, 1123
AsuHPI GGTGA 2 cut(s) 222, 794
AsuII TTCGAA 1 cut(s) 116
AsuNHI GCTAGC 1 cut(s) 542
AvaII GGWCC 3 cut(s) 293, 600, 1123
BalI TGGCCA 1 cut(s) 756
BanI GGYRCC 1 cut(s) 566
BanII GRGCYC 2 cut(s) 803, 951
BarI GAAGNNNNNNTAC 2 cut(s) 321, 353
BbrPI CACGTG 1 cut(s) 773
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 2 cut(s) 778, 951
BbvI GCAGC 4 cut(s) 434, 875, 927, 967
BccI CCATC 5 cut(s) 41, 59, 487, 734, 887
BceAI ACGGC 1 cut(s) 261
BcgI CGANNNNNNTGC 4 cut(s) 6, 40, 999, 1033
BciT130I CCWGG 1 cut(s) 378
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 2 cut(s) 15, 953
BfoI RGCGCY 2 cut(s) 510, 989
BfrI CTTAAG 2 cut(s) 823, 1141
BisI GCNGC 4 cut(s) 423, 889, 916, 956
BlsI GCNGC 4 cut(s) 424, 890, 917, 957
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 3 cut(s) 293, 600, 1123
BmgT120I GGNCC 3 cut(s) 293, 600, 1123
BmiI GGNNCC 1 cut(s) 568
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 4 cut(s) 91, 409, 434, 529
BmtI GCTAGC 1 cut(s) 546
BpiI GAAGAC 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 1115
BsaAI YACGTR 1 cut(s) 773
BsaJI CCNNGG 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 377, 1095, 1132
Bse1I ACTGG 3 cut(s) 136, 791, 919
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 4 cut(s) 52, 319, 444, 910
BseLI CCNNNNNNNGG 3 cut(s) 377, 1095, 1132
BseMII CTCAG 3 cut(s) 168, 822, 960
BseNI ACTGG 3 cut(s) 136, 791, 919
BseRI GAGGAG 1 cut(s) 1111
BseXI GCAGC 4 cut(s) 434, 875, 927, 967
BseYI CCCAGC 2 cut(s) 620, 721
BsgI GTGCAG 2 cut(s) 676, 945
BshFI GGCC 1 cut(s) 756
BshNI GGYRCC 1 cut(s) 566
BsiHKAI GWGCWC 2 cut(s) 778, 951
BslFI GGGAC 1 cut(s) 1072
BslI CCNNNNNNNGG 3 cut(s) 377, 1095, 1132
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 1072
BsnI GGCC 1 cut(s) 756
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 3 cut(s) 778, 803, 951
Bsp143I GATC 6 cut(s) 88, 334, 523, 676, 964, 1057
BspACI CCGC 3 cut(s) 163, 649, 726
BspANI GGCC 1 cut(s) 756
BspCNI CTCAG 3 cut(s) 167, 823, 961
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 568
BspMAI CTGCAG 2 cut(s) 19, 957
BspOI GCTAGC 1 cut(s) 546
BspPI GGATC 3 cut(s) 96, 959, 1052
BspT104I TTCGAA 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 566
BspTI CTTAAG 2 cut(s) 823, 1141
BsrI ACTGG 3 cut(s) 136, 791, 919
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 6 cut(s) 88, 334, 523, 676, 964, 1057
BssNAI GTATAC 1 cut(s) 74
Bst1107I GTATAC 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 1 cut(s) 1033
Bst6I CTCTTC 1 cut(s) 1088
BstAFI CTTAAG 2 cut(s) 823, 1141
BstBAI YACGTR 1 cut(s) 773
BstBI TTCGAA 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 5 cut(s) 154, 449, 831, 969, 1083
BstENI CCTNNNNNAGG 1 cut(s) 1130
BstF5I GGATG 4 cut(s) 52, 319, 444, 910
BstH2I RGCGCY 2 cut(s) 510, 989
BstHHI GCGC 2 cut(s) 509, 988
BstKTI GATC 6 cut(s) 91, 337, 526, 679, 967, 1060
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 6 cut(s) 88, 334, 523, 676, 964, 1057
BstMWI GCNNNNNNNGC 4 cut(s) 527, 825, 894, 955
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 1 cut(s) 1020
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 2 cut(s) 15, 953
BstV1I GCAGC 4 cut(s) 434, 875, 927, 967
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 1 cut(s) 1057
BstYI RGATCY 1 cut(s) 1057
BstZ17I GTATAC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 756
BtgZI GCGATG 1 cut(s) 906
BtsCI GGATG 4 cut(s) 52, 319, 444, 910
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 3 cut(s) 570, 771, 926
Cac8I GCNNGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 14
CciI TCATGA 1 cut(s) 340
CfoI GCGC 2 cut(s) 509, 988
Cfr13I GGNCC 3 cut(s) 293, 600, 1123
Csp6I GTAC 1 cut(s) 567
CviAII CATG 7 cut(s) 32, 82, 307, 341, 527, 604, 1017
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 5 cut(s) 154, 449, 831, 969, 1083
DpnI GATC 6 cut(s) 90, 336, 525, 678, 966, 1059
DpnII GATC 6 cut(s) 88, 334, 523, 676, 964, 1057
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 1088
EarI CTCTTC 1 cut(s) 1088
Ecl136II GAGCTC 1 cut(s) 949
Eco24I GRGCYC 2 cut(s) 803, 951
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 3 cut(s) 293, 600, 1123
Eco47III AGCGCT 1 cut(s) 987
Eco53kI GAGCTC 1 cut(s) 949
Eco57I CTGAAG 1 cut(s) 1134
Eco72I CACGTG 1 cut(s) 773
EcoICRI GAGCTC 1 cut(s) 949
EcoNI CCTNNNNNAGG 1 cut(s) 1130
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 376
EcoRV GATATC 1 cut(s) 22
EcoT22I ATGCAT 2 cut(s) 184, 532
EcoT38I GRGCYC 2 cut(s) 803, 951
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 7 cut(s) 35, 85, 310, 344, 530, 607, 1020
FalI AAGNNNNNCTT 1 cut(s) 1124
FaqI GGGAC 1 cut(s) 1072
FatI CATG 7 cut(s) 31, 81, 306, 340, 526, 603, 1016
FauI CCCGC 1 cut(s) 642
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 4 cut(s) 423, 889, 916, 956
FokI GGATG 4 cut(s) 59, 326, 431, 917
FriOI GRGCYC 2 cut(s) 803, 951
Fsp4HI GCNGC 4 cut(s) 423, 889, 916, 956
FspBI CTAG 1 cut(s) 543
GlaI GCGC 2 cut(s) 508, 987
GluI GCNGC 4 cut(s) 423, 889, 916, 956
GsaI CCCAGC 2 cut(s) 624, 725
HaeII RGCGCY 2 cut(s) 510, 989
HaeIII GGCC 1 cut(s) 756
HhaI GCGC 2 cut(s) 509, 988
Hin1II CATG 7 cut(s) 35, 85, 310, 344, 530, 607, 1020
Hin6I GCGC 2 cut(s) 507, 986
HinP1I GCGC 2 cut(s) 507, 986
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 4 cut(s) 194, 200, 453, 467
HphI GGTGA 2 cut(s) 222, 794
Hpy166II GTNNAC 2 cut(s) 74, 189
Hpy188I TCNGA 7 cut(s) 199, 205, 286, 700, 832, 1054, 1154
Hpy188III TCNNGA 5 cut(s) 9, 273, 341, 877, 968
Hpy8I GTNNAC 2 cut(s) 74, 189
HpyAV CCTTC 7 cut(s) 381, 511, 591, 648, 937, 1109, 1136
HpyCH4III ACNGT 1 cut(s) 1033
HpyCH4IV ACGT 2 cut(s) 123, 772
HpyCH4V TGCA 9 cut(s) 17, 171, 182, 422, 530, 536, 693, 926, 955
HpyF10VI GCNNNNNNNGC 4 cut(s) 527, 825, 894, 955
HpyF3I CTNAG 5 cut(s) 154, 449, 831, 969, 1083
HpySE526I ACGT 2 cut(s) 123, 772
Hsp92II CATG 7 cut(s) 35, 85, 310, 344, 530, 607, 1020
HspAI GCGC 2 cut(s) 507, 986
KpnI GGTACC 1 cut(s) 570
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 6 cut(s) 88, 334, 523, 676, 964, 1057
LmnI GCTCC 3 cut(s) 504, 946, 954
Lsp1109I GCAGC 4 cut(s) 434, 875, 927, 967
LweI GCATC 4 cut(s) 91, 409, 434, 529
MaeI CTAG 1 cut(s) 543
MaeII ACGT 2 cut(s) 123, 772
MaeIII GTNAC 4 cut(s) 34, 228, 782, 928
MalI GATC 6 cut(s) 90, 336, 525, 678, 966, 1059
MboI GATC 6 cut(s) 88, 334, 523, 676, 964, 1057
MboII GAAGA 6 cut(s) 329, 476, 875, 878, 1067, 1105
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 1 cut(s) 1057
MhlI GDGCHC 3 cut(s) 778, 803, 951
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 7 cut(s) 112, 166, 660, 711, 839, 849, 1077
MluNI TGGCCA 1 cut(s) 756
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 2 cut(s) 1030, 1101
Mox20I TGGCCA 1 cut(s) 756
Mph1103I ATGCAT 2 cut(s) 184, 532
MroXI GAANNNNTTC 2 cut(s) 280, 1105
MscI TGGCCA 1 cut(s) 756
MseI TTAA 5 cut(s) 59, 435, 707, 824, 1142
MslI CAYNNNNRTG 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 1112
MspCI CTTAAG 2 cut(s) 823, 1141
MspR9I CCNGG 1 cut(s) 378
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 4 cut(s) 527, 825, 894, 955
NdeII GATC 6 cut(s) 88, 334, 523, 676, 964, 1057
NheI GCTAGC 1 cut(s) 542
NlaIII CATG 7 cut(s) 35, 85, 310, 344, 530, 607, 1020
NlaIV GGNNCC 1 cut(s) 568
NmuCI GTSAC 2 cut(s) 228, 782
NsiI ATGCAT 2 cut(s) 184, 532
NspI RCATGY 1 cut(s) 1020
NspV TTCGAA 1 cut(s) 116
OliI CACNNNNGTG 1 cut(s) 411
PagI TCATGA 1 cut(s) 340
PdmI GAANNNNTTC 2 cut(s) 280, 1105
PfeI GAWTC 3 cut(s) 194, 200, 453
PkrI GCNGC 4 cut(s) 424, 890, 917, 957
PleI GAGTC 1 cut(s) 461
PmaCI CACGTG 1 cut(s) 773
PmlI CACGTG 1 cut(s) 773
PpsI GAGTC 1 cut(s) 461
Ppu21I YACGTR 1 cut(s) 773
PpuMI RGGWCCY 1 cut(s) 293
Psp124BI GAGCTC 1 cut(s) 951
Psp1406I AACGTT 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 376
PspCI CACGTG 1 cut(s) 773
PspFI CCCAGC 2 cut(s) 620, 721
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 1 cut(s) 568
PspPI GGNCC 3 cut(s) 293, 600, 1123
PspPPI RGGWCCY 1 cut(s) 293
PstI CTGCAG 2 cut(s) 19, 957
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 1057
PvuII CAGCTG 1 cut(s) 1112
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 951
SaqAI TTAA 5 cut(s) 59, 435, 707, 824, 1142
SatI GCNGC 4 cut(s) 423, 889, 916, 956
Sau3AI GATC 6 cut(s) 88, 334, 523, 676, 964, 1057
Sau96I GGNCC 3 cut(s) 293, 600, 1123
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 3 cut(s) 778, 803, 951
SfaNI GCATC 4 cut(s) 91, 409, 434, 529
SfcI CTRYAG 2 cut(s) 15, 953
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 3 cut(s) 293, 600, 1123
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 3 cut(s) 823, 1130, 1141
SmoI CTYRAG 3 cut(s) 823, 1130, 1141
Sse9I AATT 7 cut(s) 112, 166, 660, 711, 839, 849, 1077
SsiI CCGC 3 cut(s) 163, 649, 726
SspMI CTAG 1 cut(s) 543
SstI GAGCTC 1 cut(s) 951
StyD4I CCNGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 1033
TaiI ACGT 2 cut(s) 126, 775
TaqI TCGA 2 cut(s) 116, 631
TaqII GACCGA 1 cut(s) 206
TasI AATT 7 cut(s) 112, 166, 660, 711, 839, 849, 1077
TfiI GAWTC 3 cut(s) 194, 200, 453
Tru1I TTAA 5 cut(s) 59, 435, 707, 824, 1142
Tru9I TTAA 5 cut(s) 59, 435, 707, 824, 1142
TscAI CASTG 3 cut(s) 577, 771, 926
TseFI GTSAC 2 cut(s) 228, 782
TseI GCWGC 4 cut(s) 422, 888, 915, 955
Tsp45I GTSAC 2 cut(s) 228, 782
TspDTI ATGAA 3 cut(s) 329, 357, 445
TspGWI ACGGA 3 cut(s) 257, 417, 875
TspRI CASTG 3 cut(s) 577, 771, 926
Vha464I CTTAAG 2 cut(s) 823, 1141
VpaK11BI GGWCC 3 cut(s) 293, 600, 1123
XagI CCTNNNNNAGG 1 cut(s) 1130
XapI RAATTY 2 cut(s) 112, 1077
XceI RCATGY 1 cut(s) 1020
XmiI GTMKAC 1 cut(s) 73
XmnI GAANNNNTTC 2 cut(s) 280, 1105
XspI CTAG 1 cut(s) 543
Zsp2I ATGCAT 2 cut(s) 184, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.