Rroxscaffold_2G00145030

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008979
Physical Location & Seq
Reverse (-)
82879664 .. 82882486
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145030.1

Sequence Viewer

Length: 1218 bp
ATGATGGCTTCAGGATTTGAAATCTCGCCTCAGGTGACCGGATTTGTTAATGGGTGCTTAAAGGACACTGCTGCAATGTCTGCCCCTGCCCCTACCCCTACCCCTACCCCTGCCCCTGCCCCTACCCCTACCCCTACCCCTGCCATGGAAGATCACAATGGTGATAGTTTGGTCAATTCCAATCAAGTTGCTATTGGAAAGCCTCCGCGGAACATTTCGGTTATGAGGCATTGCACTAGCTCTGCATTCTTGTGTGAATCAGATTCAGATCTTGGAAATTTTGGCTTGAAGTCGCCTTCAGTTGAGACATCCGAGTTTGTTTCTGTATTCCGTTCGGGAAGCTGTTCTGAAAAAGGACCTAAACAGTATATGGAAGATGAGTATATTTGTGTAGATGATCTTGAGGAACATCTTGGTGCTTCAGTAAACTTGCCTTCTCATGGGGCATTTTATGGGGTCTTTGATGGACACGGTGGTGTTGATGCAGCATCATTCATAAAAAAGAATCTCCTTAATTTCATTGTTCAAGACACTCATTTCCCAAATGGCCCTAAAAAAGCAATTAGGAGCGCTTTTGTGAAGGCTGATCATGCATTTGCAGATGCTACCTCTCTTGATAAGTCCTCCGGTACTACCGCTTTGACTGCCCTTATCTTAGGAAGGAACATGCTAATCGCTAATGCTGGTGATTGTCGAGCTGTATTGGGGAAGCGCGGAAGAGCAATTGAACTATCTAAAGATCACAAACCTAATTGCACCTCTGAAAGATTAAGAATCGAGAAGCTGGGTGGTGTCATCTATGATGGATACCTCAATGGCCAACTATCAGTGGCGCGTGCTCTTGGAGACTGGCATATCAAGGGTTCTAAAGGTTCAAACTGCCCCTTAAGCTCTGAGCCAGAATTGGAGGAAATTGTCCTAACCGAGGAGGATGAATTCTTGATAATGGGTTGTGATGGCTTGTGGGATGTGATGAGCAGCCAGTGTGCTGTCACAATGGTAAGAAAGGAGCTCATGCAGCATAATGATCCTGAGAGATGTTCGAAAGTACTTGTCAAGGAGGCGCTCCAACGAAACACATGTGACAACCTGACTGTCGTGGTGGTGTGTTTCTCCGAAGACCCTCCTCCTAAGACCGAAATTCCTAAGTCCCACAAGAGGAGGAGCATTTCAGCTGAAGGGTTGGACCTTCTCAAGGGTGTCTTGAGCAGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

405

Amino Acids

43.53

Weight (kDa)

5.52

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 112 - 363 2.2e-71 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 208, 714, 835
AciI CCGC 4 cut(s) 206, 208, 636, 714
AclWI GGATC 1 cut(s) 1022
AcoI YGGCCR 1 cut(s) 817
AcsI RAATTY 3 cut(s) 277, 935, 1140
AcuI CTGAAG 3 cut(s) 282, 405, 1197
AfaI GTAC 2 cut(s) 631, 1050
AfeI AGCGCT 1 cut(s) 571
AfiI CCNNNNNNNGG 5 cut(s) 145, 440, 925, 1158, 1195
AflII CTTAAG 1 cut(s) 886
AflIII ACRYGT 1 cut(s) 1079
AgsI TTSAA 5 cut(s) 20, 289, 527, 728, 876
AleI CACNNNNGTG 2 cut(s) 159, 474
AluBI AGCT 7 cut(s) 240, 342, 698, 784, 891, 1012, 1175
AluI AGCT 7 cut(s) 240, 342, 698, 784, 891, 1012, 1175
Alw21I GWGCWC 2 cut(s) 841, 1014
Alw26I GTCTC 2 cut(s) 299, 840
AlwI GGATC 1 cut(s) 1022
Aor51HI AGCGCT 1 cut(s) 571
AoxI GGCC 2 cut(s) 547, 817
ApeKI GCWGC 5 cut(s) 71, 485, 978, 1018, 1209
ApoI RAATTY 3 cut(s) 277, 935, 1140
Asp700I GAANNNNTTC 1 cut(s) 343
AspLEI GCGC 4 cut(s) 572, 714, 835, 1066
AspS9I GGNCC 3 cut(s) 356, 548, 1186
AsuHPI GGTGA 3 cut(s) 46, 173, 698
AsuII TTCGAA 1 cut(s) 1043
AvaII GGWCC 2 cut(s) 356, 1186
AxyI CCTNAGG 1 cut(s) 30
BalI TGGCCA 1 cut(s) 819
BanII GRGCYC 1 cut(s) 1014
BbsI GAAGAC 1 cut(s) 1125
Bbv12I GWGCWC 2 cut(s) 841, 1014
BbvI GCAGC 4 cut(s) 58, 497, 990, 1030
BccI CCATC 3 cut(s) 458, 797, 950
BciVI GTATCC 1 cut(s) 800
BclI TGATCA 1 cut(s) 586
BcoDI GTCTC 2 cut(s) 299, 840
BfaI CTAG 1 cut(s) 237
BfoI RGCGCY 2 cut(s) 573, 1067
BfrI CTTAAG 1 cut(s) 886
BfuI GTATCC 1 cut(s) 800
BglII AGATCT 1 cut(s) 268
BisI GCNGC 5 cut(s) 72, 486, 979, 1019, 1210
BlsI GCNGC 5 cut(s) 73, 487, 980, 1020, 1211
BmcAI AGTACT 1 cut(s) 1050
Bme18I GGWCC 2 cut(s) 356, 1186
BmgT120I GGNCC 3 cut(s) 356, 548, 1186
BmsI GCATC 3 cut(s) 472, 497, 592
BpiI GAAGAC 1 cut(s) 1125
Bpu14I TTCGAA 1 cut(s) 1043
BpuEI CTTGAG 2 cut(s) 422, 1178
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 144, 206, 924
BsaWI WCCGGW 2 cut(s) 38, 626
Bsc4I CCNNNNNNNGG 5 cut(s) 145, 440, 925, 1158, 1195
Bse1I ACTGG 2 cut(s) 854, 982
Bse21I CCTNAGG 1 cut(s) 30
Bse3DI GCAATG 2 cut(s) 81, 229
Bse8I GATNNNNATC 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 144, 206, 924
BseGI GGATG 3 cut(s) 308, 937, 973
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 5 cut(s) 145, 440, 925, 1158, 1195
BseMI GCAATG 2 cut(s) 81, 229
BseMII CTCAG 3 cut(s) 44, 885, 1023
BseNI ACTGG 2 cut(s) 854, 982
BseRI GAGGAG 4 cut(s) 941, 1116, 1174, 1177
BseXI GCAGC 4 cut(s) 58, 497, 990, 1030
BseYI CCCAGC 1 cut(s) 784
Bsh1236I CGCG 3 cut(s) 208, 714, 835
BshFI GGCC 2 cut(s) 549, 819
BsiHKAI GWGCWC 2 cut(s) 841, 1014
BsiSI CCGG 2 cut(s) 39, 627
BslFI GGGAC 1 cut(s) 1135
BslI CCNNNNNNNGG 5 cut(s) 145, 440, 925, 1158, 1195
BsmAI GTCTC 2 cut(s) 299, 840
BsmFI GGGAC 1 cut(s) 1135
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 2 cut(s) 549, 819
Bsp119I TTCGAA 1 cut(s) 1043
Bsp1286I GDGCHC 2 cut(s) 841, 1014
Bsp143I GATC 6 cut(s) 151, 268, 397, 586, 739, 1027
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 4 cut(s) 206, 208, 636, 714
BspANI GGCC 2 cut(s) 549, 819
BspCNI CTCAG 3 cut(s) 43, 886, 1024
BspFNI CGCG 3 cut(s) 208, 714, 835
BspPI GGATC 1 cut(s) 1022
BspQI GCTCTTC 1 cut(s) 712
BspT104I TTCGAA 1 cut(s) 1043
BspTI CTTAAG 1 cut(s) 886
BsrDI GCAATG 2 cut(s) 81, 229
BsrI ACTGG 2 cut(s) 854, 982
BssECI CCNNGG 3 cut(s) 144, 206, 924
BssMI GATC 6 cut(s) 151, 268, 397, 586, 739, 1027
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 3 cut(s) 366, 473, 1096
Bst6I CTCTTC 1 cut(s) 712
BstAFI CTTAAG 1 cut(s) 886
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 1043
BstC8I GCNNGC 1 cut(s) 837
BstDEI CTNAG 6 cut(s) 30, 655, 894, 1032, 1131, 1146
BstDSI CCRYGG 2 cut(s) 144, 206
BstEII GGTNACC 1 cut(s) 34
BstENI CCTNNNNNAGG 2 cut(s) 923, 1193
BstF5I GGATG 3 cut(s) 308, 937, 973
BstFNI CGCG 3 cut(s) 208, 714, 835
BstH2I RGCGCY 2 cut(s) 573, 1067
BstHHI GCGC 4 cut(s) 572, 714, 835, 1066
BstKTI GATC 6 cut(s) 154, 271, 400, 589, 742, 1030
BstMAI GTCTC 2 cut(s) 299, 840
BstMBI GATC 6 cut(s) 151, 268, 397, 586, 739, 1027
BstMWI GCNNNNNNNGC 5 cut(s) 80, 590, 644, 888, 1018
BstNSI RCATGY 2 cut(s) 670, 1083
BstPI GGTNACC 1 cut(s) 34
BstUI CGCG 3 cut(s) 208, 714, 835
BstV1I GCAGC 4 cut(s) 58, 497, 990, 1030
BstV2I GAAGAC 1 cut(s) 1125
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 30
BsuI GTATCC 1 cut(s) 800
BsuRI GGCC 2 cut(s) 549, 819
BtgI CCRYGG 2 cut(s) 144, 206
BtsCI GGATG 3 cut(s) 308, 937, 973
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 3 cut(s) 66, 834, 989
Cac8I GCNNGC 1 cut(s) 837
CfoI GCGC 4 cut(s) 572, 714, 835, 1066
Cfr13I GGNCC 3 cut(s) 356, 548, 1186
Cfr42I CCGCGG 1 cut(s) 209
Csp6I GTAC 2 cut(s) 630, 1049
CviAII CATG 6 cut(s) 145, 440, 590, 667, 1015, 1080
CviQI GTAC 2 cut(s) 630, 1049
DdeI CTNAG 6 cut(s) 30, 655, 894, 1032, 1131, 1146
DpnI GATC 6 cut(s) 153, 270, 399, 588, 741, 1029
DpnII GATC 6 cut(s) 151, 268, 397, 586, 739, 1027
EaeI YGGCCR 1 cut(s) 817
Eam1104I CTCTTC 1 cut(s) 712
EarI CTCTTC 1 cut(s) 712
Ecl136II GAGCTC 1 cut(s) 1012
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 1014
Eco47I GGWCC 2 cut(s) 356, 1186
Eco47III AGCGCT 1 cut(s) 571
Eco53kI GAGCTC 1 cut(s) 1012
Eco57I CTGAAG 3 cut(s) 282, 405, 1197
Eco81I CCTNAGG 1 cut(s) 30
Eco91I GGTNACC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 1012
EcoNI CCTNNNNNAGG 2 cut(s) 923, 1193
EcoO109I RGGNCCY 1 cut(s) 356
EcoO65I GGTNACC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 935
EcoT14I CCWWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 1014
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 6 cut(s) 148, 443, 593, 670, 1018, 1083
FalI AAGNNNNNCTT 1 cut(s) 1187
FaqI GGGAC 1 cut(s) 1135
FatI CATG 6 cut(s) 144, 439, 589, 666, 1014, 1079
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 5 cut(s) 72, 486, 979, 1019, 1210
FokI GGATG 3 cut(s) 295, 944, 980
FriOI GRGCYC 1 cut(s) 1014
Fsp4HI GCNGC 5 cut(s) 72, 486, 979, 1019, 1210
FspBI CTAG 1 cut(s) 237
GlaI GCGC 4 cut(s) 571, 713, 834, 1065
GluI GCNGC 5 cut(s) 72, 486, 979, 1019, 1210
GsaI CCCAGC 1 cut(s) 788
HaeII RGCGCY 2 cut(s) 573, 1067
HaeIII GGCC 2 cut(s) 549, 819
HapII CCGG 2 cut(s) 39, 627
HhaI GCGC 4 cut(s) 572, 714, 835, 1066
Hin1II CATG 6 cut(s) 148, 443, 593, 670, 1018, 1083
Hin6I GCGC 4 cut(s) 570, 712, 833, 1064
HinP1I GCGC 4 cut(s) 570, 712, 833, 1064
HinfI GANTC 4 cut(s) 257, 263, 505, 774
HpaII CCGG 2 cut(s) 39, 627
HphI GGTGA 3 cut(s) 46, 173, 698
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 7 cut(s) 262, 268, 313, 349, 763, 895, 1117
Hpy188III TCNNGA 9 cut(s) 12, 336, 401, 527, 614, 778, 940, 1031, 1204
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 6 cut(s) 306, 444, 574, 654, 1172, 1199
HpyCH4III ACNGT 3 cut(s) 366, 473, 1096
HpyCH4V TGCA 8 cut(s) 74, 234, 245, 485, 593, 599, 756, 1018
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 590, 644, 888, 1018
HpyF3I CTNAG 6 cut(s) 30, 655, 894, 1032, 1131, 1146
Hsp92II CATG 6 cut(s) 148, 443, 593, 670, 1018, 1083
HspAI GCGC 4 cut(s) 570, 712, 833, 1064
Ksp22I TGATCA 1 cut(s) 586
KspI CCGCGG 1 cut(s) 209
Kzo9I GATC 6 cut(s) 151, 268, 397, 586, 739, 1027
LguI GCTCTTC 1 cut(s) 712
LmnI GCTCC 4 cut(s) 567, 1009, 1071, 1164
Lsp1109I GCAGC 4 cut(s) 58, 497, 990, 1030
LweI GCATC 3 cut(s) 472, 497, 592
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 3 cut(s) 34, 991, 1082
MalI GATC 6 cut(s) 153, 270, 399, 588, 741, 1029
MboI GATC 6 cut(s) 151, 268, 397, 586, 739, 1027
MboII GAAGA 4 cut(s) 161, 386, 729, 1130
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 841, 1014
MlsI TGGCCA 1 cut(s) 819
MluNI TGGCCA 1 cut(s) 819
MmeI TCCRAC 2 cut(s) 1093, 1164
Mox20I TGGCCA 1 cut(s) 819
Mph1103I ATGCAT 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 343
MscI TGGCCA 1 cut(s) 819
MseI TTAA 5 cut(s) 48, 59, 513, 770, 887
MslI CAYNNNNRTG 4 cut(s) 159, 250, 414, 474
Msp20I TGGCCA 1 cut(s) 819
MspA1I CMGCKG 2 cut(s) 208, 1175
MspCI CTTAAG 1 cut(s) 886
MspI CCGG 2 cut(s) 39, 627
MunI CAATTG 1 cut(s) 723
Mva1269I GAATGC 1 cut(s) 245
MvnI CGCG 3 cut(s) 208, 714, 835
MwoI GCNNNNNNNGC 5 cut(s) 80, 590, 644, 888, 1018
NcoI CCATGG 1 cut(s) 144
NdeII GATC 6 cut(s) 151, 268, 397, 586, 739, 1027
NlaIII CATG 6 cut(s) 148, 443, 593, 670, 1018, 1083
NmuCI GTSAC 3 cut(s) 34, 991, 1082
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 2 cut(s) 670, 1083
NspV TTCGAA 1 cut(s) 1043
OliI CACNNNNGTG 2 cut(s) 159, 474
PciI ACATGT 1 cut(s) 1079
PciSI GCTCTTC 1 cut(s) 712
PctI GAATGC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 343
PfeI GAWTC 4 cut(s) 257, 263, 505, 774
PkrI GCNGC 5 cut(s) 73, 487, 980, 1020, 1211
PpuMI RGGWCCY 1 cut(s) 356
PscI ACATGT 1 cut(s) 1079
Psp124BI GAGCTC 1 cut(s) 1014
Psp5II RGGWCCY 1 cut(s) 356
PspEI GGTNACC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 784
PspPI GGNCC 3 cut(s) 356, 548, 1186
PspPPI RGGWCCY 1 cut(s) 356
PsuI RGATCY 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 1175
RsaI GTAC 2 cut(s) 631, 1050
RsaNI GTAC 2 cut(s) 630, 1049
RseI CAYNNNNRTG 4 cut(s) 159, 250, 414, 474
SacI GAGCTC 1 cut(s) 1014
SacII CCGCGG 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 712
SaqAI TTAA 5 cut(s) 48, 59, 513, 770, 887
SatI GCNGC 5 cut(s) 72, 486, 979, 1019, 1210
Sau3AI GATC 6 cut(s) 151, 268, 397, 586, 739, 1027
Sau96I GGNCC 3 cut(s) 356, 548, 1186
ScaI AGTACT 1 cut(s) 1050
SduI GDGCHC 2 cut(s) 841, 1014
SfaNI GCATC 3 cut(s) 472, 497, 592
Sfr303I CCGCGG 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 1043
SgrBI CCGCGG 1 cut(s) 209
SinI GGWCC 2 cut(s) 356, 1186
SmiMI CAYNNNNRTG 4 cut(s) 159, 250, 414, 474
SmlI CTYRAG 4 cut(s) 401, 886, 1193, 1204
SmoI CTYRAG 4 cut(s) 401, 886, 1193, 1204
SsiI CCGC 4 cut(s) 206, 208, 636, 714
SspMI CTAG 1 cut(s) 237
SstI GAGCTC 1 cut(s) 1014
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 3 cut(s) 366, 473, 1096
TaqI TCGA 3 cut(s) 694, 777, 1043
TaqII GACCGA 1 cut(s) 1151
TatI WGTACW 1 cut(s) 1048
TfiI GAWTC 4 cut(s) 257, 263, 505, 774
Tru1I TTAA 5 cut(s) 48, 59, 513, 770, 887
Tru9I TTAA 5 cut(s) 48, 59, 513, 770, 887
TscAI CASTG 3 cut(s) 73, 834, 989
TseFI GTSAC 3 cut(s) 34, 991, 1082
TseI GCWGC 5 cut(s) 71, 485, 978, 1018, 1209
Tsp45I GTSAC 3 cut(s) 34, 991, 1082
TspDTI ATGAA 3 cut(s) 484, 508, 948
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 3 cut(s) 73, 834, 989
Vha464I CTTAAG 1 cut(s) 886
VpaK11BI GGWCC 2 cut(s) 356, 1186
XagI CCTNNNNNAGG 2 cut(s) 923, 1193
XapI RAATTY 3 cut(s) 277, 935, 1140
XceI RCATGY 2 cut(s) 670, 1083
XmnI GAANNNNTTC 1 cut(s) 343
XspI CTAG 1 cut(s) 237
ZrmI AGTACT 1 cut(s) 1050
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.