Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017050

Physical Location & Seq

Genomic Coordinates Reverse (-)

19249475 .. 19251112

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCGTCAACCTTGAGCAACGAAGAGTCAGGACTCGGTGATTCAAATCGTTCGACGGAAGTAGATGGCGGCGACGGAGGAAACTTCACGGCTTACGAGTCTCGATTCCAGTCGCAGCGGTTTGACTCTTCCTTCTCTAATTTTGACTCCCAACCGGAGAAAGAGTCAGACTTACCATGCGGCGATTCATCTCCTCGACCCGAAACTCAATCTCCGCCGTCGATAAATAGTTTCGATGATACAAACGATTCGATCTTGCCGCCACCATCGGCCATGGAGAAAGAGGAAGGTTTCGCTCTTAGAGAGTGGCGAAGGCTAAATGCTCTGAGATTGGAAGAGAAAGAAAAGGAAGAGAAAGAAATGGTTCAACAAATTCTAGAAGCAGCAGAGCAATATAAGGCTGAGTTCTATAGCAAGCGTAACGTTACTATTGAAAACAACAAGAAACTAAACCGCGAGAAAGAGAAGTTTTTTTTGGAGAATCAAGAAAAGTTTTACGCTGAAGCTGACAAAAACAATTGGAAGGCGATTGCAGAACTCATTCCTCGTGAAGTGCCAGTTATAGAGAATAGAGGGAACAAGAAGAAAACAGCAACCATAACTGTAATCCAGGGACCAAAGCCAGGGAAGCCCACTGATCTGTCTCGTATGCGTCAAGTGCTCACGAAACTCAAGCACAATCCGCCAACTCATATGAAGCCAAAACTGCCCTCACCATCTGGAGCTGACCCGAATGTGAGTGTGAGTGAACAGGTCACAGTTACAGAGAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

258

Amino Acids

29.18

Weight (kDa)

5.32

Isoelectric Point (pI)

62.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	30 - 227	3e-14	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51890
prunus_persica	Prupe.6G275500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463291
rosa_laevigata	RLG00000024793
rosa_multiflora	Rmu_co8110798.1_g000001 Rmu_sc0002976.1_g000007
rosa_roxburghii	Rroxscaffold_6G00416700
rosa_rugosa	Rorug03G0063600
rosa_samantha	Rh3AG121500 Rh3BG126000 Rh3CG127900 Rh3DG127100
rosa_wichuraiana	Rw3G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	456
AciI	CCGC	7 cut(s)	69, 118, 180, 215, 260, 454, 683
AclI	AACGTT	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	522
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	45, 368, 434
AjnI	CCWGG	2 cut(s)	609, 622
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	2 cut(s)	506, 725
AluI	AGCT	2 cut(s)	506, 725
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	2 cut(s)	105, 648
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	2 cut(s)	115, 383
ApoI	RAATTY	1 cut(s)	372
Asp700I	GAANNNNTTC	2 cut(s)	363, 540
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	2 cut(s)	50, 705
AvaII	GGWCC	1 cut(s)	614
BauI	CACGAG	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	127, 395
BccI	CCATC	3 cut(s)	59, 274, 724
BceAI	ACGGC	2 cut(s)	105, 202
BciT130I	CCWGG	2 cut(s)	611, 624
BcoDI	GTCTC	2 cut(s)	105, 648
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	5 cut(s)	70, 116, 181, 260, 384
BlsI	GCNGC	5 cut(s)	71, 117, 182, 261, 385
Bme1390I	CCNGG	2 cut(s)	611, 624
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	2 cut(s)	611, 624
BpmI	CTGGAG	1 cut(s)	741
BpuEI	CTTGAG	2 cut(s)	34, 656
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	3 cut(s)	273, 610, 623
BsaWI	WCCGGW	1 cut(s)	154
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 196, 226
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse1I	ACTGG	2 cut(s)	109, 557
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	611, 624
BseDI	CCNNGG	3 cut(s)	273, 610, 623
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMII	CTCAG	2 cut(s)	317, 393
BseNI	ACTGG	2 cut(s)	109, 557
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	127, 395
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	663
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	2 cut(s)	105, 648
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp143I	GATC	2 cut(s)	252, 637
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	7 cut(s)	69, 118, 180, 215, 260, 454, 683
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	318, 394
BspFNI	CGCG	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	109, 557
BssECI	CCNNGG	3 cut(s)	273, 610, 623
BssMI	GATC	2 cut(s)	252, 637
BssSI	CACGAG	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	546
Bst2UI	CCWGG	2 cut(s)	611, 624
Bst4CI	ACNGT	2 cut(s)	604, 760
Bst6I	CTCTTC	4 cut(s)	18, 133, 330, 345
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	3 cut(s)	299, 326, 402
BstDSI	CCRYGG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	456
BstKTI	GATC	2 cut(s)	255, 640
BstMAI	GTCTC	2 cut(s)	105, 648
BstMBI	GATC	2 cut(s)	252, 637
BstMWI	GCNNNNNNNGC	4 cut(s)	628, 658, 682, 706
BstNI	CCWGG	2 cut(s)	611, 624
BstSCI	CCNGG	2 cut(s)	609, 622
BstSFI	CTRYAG	1 cut(s)	409
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	127, 395
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	633
Cac8I	GCNNGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	614
CseI	GACGC	1 cut(s)	641
CviAII	CATG	2 cut(s)	177, 274
CviJI	RGCY	9 cut(s)	92, 272, 316, 401, 506, 622, 631, 700, 725
CviKI_1	RGCY	9 cut(s)	92, 272, 316, 401, 506, 622, 631, 700, 725
DdeI	CTNAG	3 cut(s)	299, 326, 402
DpnI	GATC	2 cut(s)	254, 639
DpnII	GATC	2 cut(s)	252, 637
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	4 cut(s)	18, 133, 330, 345
EarI	CTCTTC	4 cut(s)	18, 133, 330, 345
EciI	GGCGGA	2 cut(s)	204, 672
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	522
EcoRII	CCWGG	2 cut(s)	609, 622
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	180, 277
FaiI	YATR	9 cut(s)	178, 275, 396, 411, 563, 599, 650, 693, 695
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	2 cut(s)	176, 273
FauNDI	CATATG	1 cut(s)	693
Fnu4HI	GCNGC	5 cut(s)	70, 116, 181, 260, 384
Fsp4HI	GCNGC	5 cut(s)	70, 116, 181, 260, 384
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	5 cut(s)	70, 116, 181, 260, 384
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	641
Hin1II	CATG	2 cut(s)	180, 277
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	2 cut(s)	50, 705
Hpy166II	GTNNAC	2 cut(s)	9, 749
Hpy188I	TCNGA	2 cut(s)	169, 327
Hpy188III	TCNNGA	7 cut(s)	30, 102, 377, 485, 548, 664, 720
Hpy8I	GTNNAC	2 cut(s)	9, 749
Hpy99I	CGWCG	3 cut(s)	58, 77, 223
HpyAV	CCTTC	4 cut(s)	142, 281, 306, 517
HpyCH4III	ACNGT	2 cut(s)	604, 760
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	1 cut(s)	533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	628, 658, 682, 706
HpyF3I	CTNAG	3 cut(s)	299, 326, 402
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	180, 277
Kzo9I	GATC	2 cut(s)	252, 637
LmnI	GCTCC	1 cut(s)	722
Lsp1109I	GCAGC	2 cut(s)	127, 395
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	4 cut(s)	419, 424, 754, 760
MalI	GATC	2 cut(s)	254, 639
MboI	GATC	2 cut(s)	252, 637
MboII	GAAGA	5 cut(s)	35, 120, 347, 362, 595
MfeI	CAATTG	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	3 cut(s)	139, 372, 517
MlyI	GAGTC	6 cut(s)	27, 35, 107, 119, 140, 173
MnlI	CCTC	6 cut(s)	71, 204, 277, 555, 566, 721
MroXI	GAANNNNTTC	2 cut(s)	363, 540
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	611, 624
MunI	CAATTG	1 cut(s)	517
MvaI	CCWGG	2 cut(s)	611, 624
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	4 cut(s)	628, 658, 682, 706
NcoI	CCATGG	1 cut(s)	273
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	2 cut(s)	252, 637
NlaIII	CATG	2 cut(s)	180, 277
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	1 cut(s)	754
PdmI	GAANNNNTTC	2 cut(s)	363, 540
PfeI	GAWTC	5 cut(s)	41, 105, 185, 248, 481
PkrI	GCNGC	5 cut(s)	71, 117, 182, 261, 385
PleI	GAGTC	6 cut(s)	27, 34, 106, 119, 140, 172
PpsI	GAGTC	6 cut(s)	27, 34, 106, 119, 140, 172
Psp1406I	AACGTT	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	609, 622
PspGI	CCWGG	2 cut(s)	609, 622
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	1 cut(s)	614
SatI	GCNGC	5 cut(s)	70, 116, 181, 260, 384
Sau3AI	GATC	2 cut(s)	252, 637
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	6 cut(s)	27, 35, 107, 119, 140, 173
ScrFI	CCNGG	2 cut(s)	611, 624
SduI	GDGCHC	1 cut(s)	663
SetI	ASST	6 cut(s)	14, 292, 426, 508, 727, 756
SfcI	CTRYAG	1 cut(s)	409
SinI	GGWCC	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	13, 671
SmoI	CTYRAG	2 cut(s)	13, 671
Sse9I	AATT	3 cut(s)	139, 372, 517
SsiI	CCGC	7 cut(s)	69, 118, 180, 215, 260, 454, 683
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	609, 622
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	604, 760
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	6 cut(s)	53, 103, 196, 221, 234, 251
TasI	AATT	3 cut(s)	139, 372, 517
TauI	GCSGC	3 cut(s)	72, 183, 262
TfiI	GAWTC	5 cut(s)	41, 105, 185, 248, 481
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	2 cut(s)	115, 383
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	2 cut(s)	177, 710
TspGWI	ACGGA	2 cut(s)	71, 90
TspRI	CASTG	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	1 cut(s)	372
XbaI	TCTAGA	1 cut(s)	376
XmnI	GAANNNNTTC	2 cut(s)	363, 540
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.