Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0017050

Physical Location & Seq

Genomic Coordinates Forward (+)

25974736 .. 25976197

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G275500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTCATCGTTCGGATCCGGGTCGACCCGCCCGTTCGACGACGACGGGTATACGGGCTACGATCCTCGGCTCGCGTCCAAGCAATTCGACTCGTTCTCGAACTTCGACGCCGACTCCGTCAACGACTCGTCGCCGATCTTCTCCAACCAGCCGTACCTTGCCGGAGACAACGCGTTCAGCTCTCATCCGGTGCCGCGAACTCAATCGCTGCCGTCGATGTTCTCCAAAGGCGGACCGTCGTTGCCGTCTCCGGCTGAGATGGAGCCGGACGAGGGCTTCCCACTGAAAGAGTGGTGGAGACGAAACGTGCTTGAGTTGGAGGAGAAGGAGAAGAAGGAGAAAGAGAAGTTGCAGAGGATAATCGAAGAAGCAGAGGCTTACAAGGTGGAGTTCTACAGGAAGCGTCAGCTCAGCGTTGAGAAGAAGAAAGCGTCGAACAGAGAAAGCGAGAAGGTGTTTGTGGAAAATCAAGAGAAATTTCAAGCAGAAGCTGAGAAAAATTACTGGAAAGCAATCGCAGAGCTTATACCTCGCGAGGTGGCAGCGATAGAGAAGAGGGGGAAGAAGAGAGACAAAGACAAAGAGAAGAAGGCTTCCGTGGTTGTGGTTCAAGGGTCAAAGCCTGGAAAGCCAACCGACCTCACGAGAATGCGTCAGATTCTTGTGAAGCTTAATTACAATCCCCCTCAGCATATGAAGCCCAAACCAGAACCAACAGCTCAACCCAAACAAGATGCTCAAGCAATTGTGATTAATGAAGCTGCTGTAGCTGCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

260

Amino Acids

29.38

Weight (kDa)

8.76

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51890
prunus_persica	Prupe.6G275500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463291
rosa_laevigata	RLG00000024793
rosa_multiflora	Rmu_co8110798.1_g000001 Rmu_sc0002976.1_g000007
rosa_roxburghii	Rroxscaffold_6G00416700
rosa_rugosa	Rorug03G0063600
rosa_samantha	Rh3AG121500 Rh3BG126000 Rh3CG127900 Rh3DG127100
rosa_wichuraiana	Rw3G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccI	GTMKAC	2 cut(s)	23, 50
AccII	CGCG	4 cut(s)	74, 173, 196, 534
AciI	CCGC	3 cut(s)	28, 194, 231
AclWI	GGATC	3 cut(s)	9, 22, 56
AcsI	RAATTY	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	482, 611
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	8 cut(s)	180, 409, 491, 523, 670, 719, 761, 770
AluI	AGCT	8 cut(s)	180, 409, 491, 523, 670, 719, 761, 770
Alw26I	GTCTC	4 cut(s)	159, 252, 292, 564
AlwI	GGATC	3 cut(s)	9, 22, 56
AlwNI	CAGNNNCTG	1 cut(s)	491
ApeKI	GCWGC	4 cut(s)	208, 542, 761, 770
ApoI	RAATTY	1 cut(s)	476
AseI	ATTAAT	1 cut(s)	753
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	233
BamHI	GGATCC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	190
BarI	GAAGNNNNNNTAC	2 cut(s)	659, 691
BauI	CACGAG	1 cut(s)	643
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	4 cut(s)	195, 554, 748, 757
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	3 cut(s)	136, 196, 229
BciT130I	CCWGG	1 cut(s)	624
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	4 cut(s)	159, 252, 292, 564
BfmI	CTRYAG	2 cut(s)	394, 765
BisI	GCNGC	5 cut(s)	194, 209, 543, 762, 771
BlpI	GCTNAGC	1 cut(s)	410
BlsI	GCNGC	5 cut(s)	195, 210, 544, 763, 772
Bme1390I	CCNGG	2 cut(s)	19, 624
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	3 cut(s)	16, 192, 264
BmrFI	CCNGG	2 cut(s)	19, 624
BmsI	GCATC	1 cut(s)	724
Bpu10I	CCTNAGC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	332, 723
BpuMI	CCSGG	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	65, 597
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	2 cut(s)	65, 597
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	4 cut(s)	246, 424, 483, 701
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	4 cut(s)	195, 554, 748, 757
Bsh1236I	CGCG	4 cut(s)	74, 173, 196, 534
BshNI	GGYRCC	1 cut(s)	190
BsiSI	CCGG	5 cut(s)	18, 162, 188, 251, 266
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	4 cut(s)	159, 252, 292, 564
BsmBI	CGTCTC	2 cut(s)	252, 292
BsmI	GAATGC	1 cut(s)	654
Bsp143I	GATC	3 cut(s)	14, 61, 135
Bsp1720I	GCTNAGC	1 cut(s)	410
Bsp68I	TCGCGA	1 cut(s)	534
BspACI	CCGC	3 cut(s)	28, 194, 231
BspCNI	CTCAG	4 cut(s)	247, 423, 484, 700
BspFNI	CGCG	4 cut(s)	74, 173, 196, 534
BspLI	GGNNCC	3 cut(s)	16, 192, 264
BspPI	GGATC	3 cut(s)	9, 22, 56
BspT107I	GGYRCC	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	509
BssECI	CCNNGG	2 cut(s)	65, 597
BssMI	GATC	3 cut(s)	14, 61, 135
BssNAI	GTATAC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	643
Bst1107I	GTATAC	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	1 cut(s)	237
Bst6I	CTCTTC	2 cut(s)	548, 560
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	255, 410, 492, 687
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	4 cut(s)	74, 173, 196, 534
BstKTI	GATC	3 cut(s)	17, 64, 138
BstMAI	GTCTC	4 cut(s)	159, 252, 292, 564
BstMBI	GATC	3 cut(s)	14, 61, 135
BstMWI	GCNNNNNNNGC	4 cut(s)	628, 697, 767, 770
BstNI	CCWGG	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	17, 622
BstSFI	CTRYAG	2 cut(s)	394, 765
BstUI	CGCG	4 cut(s)	74, 173, 196, 534
BstV1I	GCAGC	4 cut(s)	195, 554, 748, 757
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BstZ17I	GTATAC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	281
BtuMI	TCGCGA	1 cut(s)	534
Cac8I	GCNNGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	233
CpoI	CGGWCCG	1 cut(s)	233
CseI	GACGC	5 cut(s)	63, 116, 392, 420, 641
Csp6I	GTAC	1 cut(s)	154
CspI	CGGWCCG	1 cut(s)	233
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	4 cut(s)	255, 410, 492, 687
DpnI	GATC	3 cut(s)	16, 63, 137
DpnII	GATC	3 cut(s)	14, 61, 135
Eam1104I	CTCTTC	2 cut(s)	548, 560
EarI	CTCTTC	2 cut(s)	548, 560
EciI	GGCGGA	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	622
Esp3I	CGTCTC	2 cut(s)	252, 292
FaiI	YATR	4 cut(s)	51, 527, 693, 695
FauI	CCCGC	1 cut(s)	35
FauNDI	CATATG	1 cut(s)	693
FblI	GTMKAC	2 cut(s)	23, 50
Fnu4HI	GCNGC	5 cut(s)	194, 209, 543, 762, 771
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	5 cut(s)	194, 209, 543, 762, 771
GluI	GCNGC	5 cut(s)	194, 209, 543, 762, 771
HapII	CCGG	5 cut(s)	18, 162, 188, 251, 266
HgaI	GACGC	5 cut(s)	63, 116, 392, 420, 641
Hin1I	GRCGYC	1 cut(s)	108
HincII	GTYRAC	2 cut(s)	24, 121
HindII	GTYRAC	2 cut(s)	24, 121
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	4 cut(s)	89, 113, 125, 658
HpaII	CCGG	5 cut(s)	18, 162, 188, 251, 266
Hpy166II	GTNNAC	3 cut(s)	24, 51, 121
Hpy188I	TCNGA	2 cut(s)	14, 657
Hpy188III	TCNNGA	4 cut(s)	97, 470, 533, 643
Hpy8I	GTNNAC	3 cut(s)	24, 51, 121
Hpy99I	CGWCG	8 cut(s)	41, 44, 47, 110, 133, 217, 241, 436
HpyAV	CCTTC	4 cut(s)	319, 328, 445, 583
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	4 cut(s)	628, 697, 767, 770
HpyF3I	CTNAG	4 cut(s)	255, 410, 492, 687
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	14, 61, 135
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	4 cut(s)	195, 554, 748, 757
LweI	GCATC	1 cut(s)	724
MaeII	ACGT	1 cut(s)	306
MalI	GATC	3 cut(s)	16, 63, 137
MboI	GATC	3 cut(s)	14, 61, 135
MboII	GAAGA	9 cut(s)	130, 343, 377, 433, 436, 565, 574, 577, 598
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	14
MluCI	AATT	5 cut(s)	83, 476, 499, 673, 744
MluI	ACGCGT	1 cut(s)	171
MlyI	GAGTC	3 cut(s)	83, 107, 119
MmeI	TCCRAC	2 cut(s)	168, 297
MseI	TTAA	2 cut(s)	672, 753
MslI	CAYNNNNRTG	1 cut(s)	647
MspI	CCGG	5 cut(s)	18, 162, 188, 251, 266
MspR9I	CCNGG	2 cut(s)	19, 624
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	4 cut(s)	74, 173, 196, 534
MwoI	GCNNNNNNNGC	4 cut(s)	628, 697, 767, 770
NciI	CCSGG	1 cut(s)	19
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	3 cut(s)	14, 61, 135
NlaIV	GGNNCC	3 cut(s)	16, 192, 264
NmeAIII	GCCGAG	1 cut(s)	46
NruI	TCGCGA	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 114, 212
PctI	GAATGC	1 cut(s)	654
PfeI	GAWTC	1 cut(s)	658
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	5 cut(s)	195, 210, 544, 763, 772
PleI	GAGTC	3 cut(s)	83, 107, 119
PpsI	GAGTC	3 cut(s)	83, 107, 119
PshBI	ATTAAT	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	3 cut(s)	16, 192, 264
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	116
RruI	TCGCGA	1 cut(s)	534
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	647
Rsr2I	CGGWCCG	1 cut(s)	233
RsrII	CGGWCCG	1 cut(s)	233
SalI	GTCGAC	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	672, 753
SatI	GCNGC	5 cut(s)	194, 209, 543, 762, 771
Sau3AI	GATC	3 cut(s)	14, 61, 135
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	3 cut(s)	83, 107, 119
ScrFI	CCNGG	2 cut(s)	19, 624
SfaNI	GCATC	1 cut(s)	724
SfcI	CTRYAG	2 cut(s)	394, 765
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	311, 738
SmoI	CTYRAG	2 cut(s)	311, 738
Sse9I	AATT	5 cut(s)	83, 476, 499, 673, 744
SsiI	CCGC	3 cut(s)	28, 194, 231
StyD4I	CCNGG	2 cut(s)	17, 622
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	8 cut(s)	23, 36, 87, 98, 105, 215, 363, 434
TasI	AATT	5 cut(s)	83, 476, 499, 673, 744
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	2 cut(s)	672, 753
Tru9I	TTAA	2 cut(s)	672, 753
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	4 cut(s)	208, 542, 761, 770
TspDTI	ATGAA	2 cut(s)	710, 771
TspGWI	ACGGA	2 cut(s)	106, 586
TspRI	CASTG	1 cut(s)	288
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	753
XapI	RAATTY	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	288
XmiI	GTMKAC	2 cut(s)	23, 50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.