Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0017050

Physical Location & Seq

Genomic Coordinates Reverse (-)

10417186 .. 10417854

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG127900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCATCGTTCGGATCCGGGTCTACCCGCCCCTTCGACGACGGAGAGACTGAATCTCCGCCGTCGATCTTTTCAGCCGGCGGTGGATTTGGAAGCTCCGAGGCGGAGGAGGGGGTTGCCCTGAGAGAGTGGCGGAGGCGGAATGCAATTGAGCTGGGGGAGAAGGAGAAGAAGGAGAAGGAGAAGCTGAAGCAGATAATAGAGGAAGCGGAGGCGTTCAAAGTGGAGTTCTACAGGAAGCGGGAGCTGAACGTGGAGAAGAAGAAGGCTTCGAACAGAGAAGTCGAGAGGGTATTTCTGGAAAATCAGGGCAAGTTTCATGCAGAAGCTGAGAGGAATTACTGGAAAGCAGTTGCGGAGATGATTCCTCGTGAGGTTGCAGCGATTGATCAGAAGAGGGGGAAGAGAGCAGACAAGGAGAAGAAGACGGGTTCTGTGGTTTTGATTCATGGGCCGAAGCCTGGGAAGCCCACCGATCTTTCGAGGATGCGTCAGATTCTGGTGAAGCTGAAGCAGAGTCCCCCTGCTCACTGGAACCCTAAGCCAGAGGAGGTGGCTGTGGCTCATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

190

Amino Acids

21.5

Weight (kDa)

9.39

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	33 - 139	1.1e-08	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51890
prunus_persica	Prupe.6G275500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463291
rosa_laevigata	RLG00000024793
rosa_multiflora	Rmu_co8110798.1_g000001 Rmu_sc0002976.1_g000007
rosa_roxburghii	Rroxscaffold_6G00416700
rosa_rugosa	Rorug03G0063600
rosa_samantha	Rh3AG121500 Rh3BG126000 Rh3CG127900 Rh3DG127100
rosa_wichuraiana	Rw3G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	9 cut(s)	28, 59, 81, 104, 133, 139, 209, 241, 356
AclWI	GGATC	2 cut(s)	9, 22
AcuI	CTGAAG	2 cut(s)	209, 530
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	6 cut(s)	96, 154, 187, 247, 329, 508
AluI	AGCT	6 cut(s)	96, 154, 187, 247, 329, 508
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	9, 22
AlwNI	CAGNNNCTG	2 cut(s)	329, 499
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	514
AsuII	TTCGAA	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	14
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	232
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	2 cut(s)	19, 462
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	16, 536
BmrFI	CCNGG	2 cut(s)	19, 462
BmsI	GCATC	1 cut(s)	477
BpiI	GAAGAC	1 cut(s)	431
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu14I	TTCGAA	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	99, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	2 cut(s)	347, 536
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	2 cut(s)	99, 461
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	2 cut(s)	113, 321
BseNI	ACTGG	2 cut(s)	347, 536
BseRI	GAGGAG	2 cut(s)	122, 563
BseXI	GCAGC	1 cut(s)	392
BseYI	CCCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	18, 78
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	504
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	454
Bsp119I	TTCGAA	1 cut(s)	272
Bsp143I	GATC	4 cut(s)	14, 66, 388, 475
BspACI	CCGC	9 cut(s)	28, 59, 81, 104, 133, 139, 209, 241, 356
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	2 cut(s)	114, 322
BspLI	GGNNCC	2 cut(s)	16, 536
BspPI	GGATC	2 cut(s)	9, 22
BspT104I	TTCGAA	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	347, 536
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	99, 461
BssMI	GATC	4 cut(s)	14, 66, 388, 475
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	462
Bst6I	CTCTTC	2 cut(s)	389, 398
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	4 cut(s)	122, 330, 540, 570
BstF5I	GGATG	1 cut(s)	492
BstKTI	GATC	4 cut(s)	17, 69, 391, 478
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	4 cut(s)	14, 66, 388, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	2 cut(s)	17, 460
BstSFI	CTRYAG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	392
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	2 cut(s)	329, 499
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	1 cut(s)	479
CviAII	CATG	3 cut(s)	320, 449, 566
DdeI	CTNAG	4 cut(s)	122, 330, 540, 570
DpnI	GATC	4 cut(s)	16, 68, 390, 477
DpnII	GATC	4 cut(s)	14, 66, 388, 475
Eam1104I	CTCTTC	2 cut(s)	389, 398
EarI	CTCTTC	2 cut(s)	389, 398
EciI	GGCGGA	4 cut(s)	48, 119, 148, 154
Eco57I	CTGAAG	2 cut(s)	209, 530
EcoRII	CCWGG	1 cut(s)	460
FaeI	CATG	3 cut(s)	323, 452, 569
FaiI	YATR	3 cut(s)	321, 450, 567
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	3 cut(s)	319, 448, 565
FauI	CCCGC	2 cut(s)	35, 234
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	1 cut(s)	499
Fsp4HI	GCNGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	381
GsaI	CCCAGC	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	2 cut(s)	18, 78
HgaI	GACGC	1 cut(s)	479
Hin1II	CATG	3 cut(s)	323, 452, 569
HinfI	GANTC	5 cut(s)	53, 364, 445, 496, 517
HpaII	CCGG	2 cut(s)	18, 78
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	4 cut(s)	14, 100, 393, 495
Hpy188III	TCNNGA	3 cut(s)	286, 299, 371
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	3 cut(s)	41, 44, 67
HpyAV	CCTTC	5 cut(s)	43, 157, 166, 172, 259
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	3 cut(s)	146, 323, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	4 cut(s)	122, 330, 540, 570
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	323, 452, 569
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	14, 66, 388, 475
LmnI	GCTCC	2 cut(s)	101, 244
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	1 cut(s)	477
MaeII	ACGT	1 cut(s)	252
MalI	GATC	4 cut(s)	16, 68, 390, 477
MboI	GATC	4 cut(s)	14, 66, 388, 475
MboII	GAAGA	7 cut(s)	181, 271, 274, 406, 415, 433, 436
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	14
MluCI	AATT	2 cut(s)	147, 337
MlyI	GAGTC	1 cut(s)	526
MroNI	GCCGGC	1 cut(s)	77
MspI	CCGG	2 cut(s)	18, 78
MspR9I	CCNGG	2 cut(s)	19, 462
MunI	CAATTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	466
NaeI	GCCGGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	4 cut(s)	14, 66, 388, 475
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	3 cut(s)	323, 452, 569
NlaIV	GGNNCC	2 cut(s)	16, 536
NspV	TTCGAA	1 cut(s)	272
PctI	GAATGC	1 cut(s)	148
PdiI	GCCGGC	1 cut(s)	79
PfeI	GAWTC	4 cut(s)	53, 364, 445, 496
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	16, 536
PspPI	GGNCC	1 cut(s)	452
PstNI	CAGNNNCTG	2 cut(s)	329, 499
PsuI	RGATCY	1 cut(s)	14
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	4 cut(s)	14, 66, 388, 475
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	2 cut(s)	19, 462
SetI	ASST	9 cut(s)	98, 156, 189, 249, 255, 331, 378, 510, 555
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	272
Sse9I	AATT	2 cut(s)	147, 337
SsiI	CCGC	9 cut(s)	28, 59, 81, 104, 133, 139, 209, 241, 356
StyD4I	CCNGG	2 cut(s)	17, 460
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	5 cut(s)	36, 65, 272, 285, 482
TasI	AATT	2 cut(s)	147, 337
TfiI	GAWTC	4 cut(s)	53, 364, 445, 496
TscAI	CASTG	1 cut(s)	536
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	2 cut(s)	308, 437
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.