Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8110798.1

Orthogroup ID

OG0017050

Physical Location & Seq

Genomic Coordinates Forward (+)

6 .. 437

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8110798.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgatatgcaggcggaatgcaattgagctgggggagaaggagaagaaggagaaagagaagctgaggcagataatagaggaagcggaggcgttcaaagtggagttctacaggaagcgggagctgaacgtggagaagaagaaggcttcgaacagagaagtcgagagggtatttctggaaaatcagggcaagtttcatgcagaagctgagaggaattactggaaagcagttgcggagatgattcctcgtgaggttgcagcgattgatcagaagagggggaagagagcagacaaggagaagaagacgggttctgtggttgtgattcatgggccgaagcctgggaagcccaccgatctttcgaggatgcgtcagattctggtgaagctgaagcagagtccccctgctcactggaaccctaagccagaggaggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

143

Amino Acids

16.76

Weight (kDa)

9.78

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51890
prunus_persica	Prupe.6G275500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463291
rosa_laevigata	RLG00000024793
rosa_multiflora	Rmu_co8110798.1_g000001 Rmu_sc0002976.1_g000007
rosa_roxburghii	Rroxscaffold_6G00416700
rosa_rugosa	Rorug03G0063600
rosa_samantha	Rh3AG121500 Rh3BG126000 Rh3CG127900 Rh3DG127100
rosa_wichuraiana	Rw3G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	13, 83, 115, 230
AcuI	CTGAAG	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	5 cut(s)	28, 61, 121, 203, 382
AluI	AGCT	5 cut(s)	28, 61, 121, 203, 382
AlwNI	CAGNNNCTG	2 cut(s)	203, 373
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	388
AsuII	TTCGAA	1 cut(s)	146
BauI	CACGAG	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	305
BbvCI	CCTCAGC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	262
BfmI	CTRYAG	1 cut(s)	106
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	305
Bpu10I	CCTNAGC	2 cut(s)	62, 414
Bpu14I	TTCGAA	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	221, 410
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	53, 195
BseNI	ACTGG	2 cut(s)	221, 410
BseXI	GCAGC	1 cut(s)	266
BseYI	CCCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	262, 349
BspACI	CCGC	4 cut(s)	13, 83, 115, 230
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	2 cut(s)	54, 196
BspLI	GGNNCC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	221, 410
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	2 cut(s)	262, 349
BssSI	CACGAG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	336
Bst6I	CTCTTC	2 cut(s)	263, 272
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	62, 204, 414
BstF5I	GGATG	1 cut(s)	366
BstKTI	GATC	2 cut(s)	265, 352
BstMBI	GATC	2 cut(s)	262, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	11
CaiI	CAGNNNCTG	2 cut(s)	203, 373
Cfr13I	GGNCC	1 cut(s)	326
CseI	GACGC	1 cut(s)	353
CviAII	CATG	2 cut(s)	194, 323
DdeI	CTNAG	3 cut(s)	62, 204, 414
DpnI	GATC	2 cut(s)	264, 351
DpnII	GATC	2 cut(s)	262, 349
Eam1104I	CTCTTC	2 cut(s)	263, 272
EarI	CTCTTC	2 cut(s)	263, 272
EciI	GGCGGA	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	334
FaeI	CATG	2 cut(s)	197, 326
FaiI	YATR	3 cut(s)	7, 195, 324
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	2 cut(s)	193, 322
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	373
Fsp4HI	GCNGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	255
GsaI	CCCAGC	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	328
HgaI	GACGC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	197, 326
HinfI	GANTC	4 cut(s)	238, 319, 370, 391
HphI	GGTGA	1 cut(s)	388
Hpy188I	TCNGA	2 cut(s)	267, 369
Hpy188III	TCNNGA	3 cut(s)	160, 173, 245
HpyAV	CCTTC	3 cut(s)	31, 40, 133
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	4 cut(s)	9, 20, 197, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	3 cut(s)	62, 204, 414
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	197, 326
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	262, 349
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	351
MaeII	ACGT	1 cut(s)	126
MalI	GATC	2 cut(s)	264, 351
MboI	GATC	2 cut(s)	262, 349
MboII	GAAGA	7 cut(s)	55, 145, 148, 280, 289, 307, 310
MfeI	CAATTG	1 cut(s)	21
MluCI	AATT	2 cut(s)	21, 211
MlyI	GAGTC	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	2 cut(s)	262, 349
NlaIII	CATG	2 cut(s)	197, 326
NlaIV	GGNNCC	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	146
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	3 cut(s)	238, 319, 370
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	410
PspPI	GGNCC	1 cut(s)	326
PstNI	CAGNNNCTG	2 cut(s)	203, 373
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	262, 349
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	8 cut(s)	30, 63, 123, 129, 205, 252, 384, 429
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	106
SfuI	TTCGAA	1 cut(s)	146
Sse9I	AATT	2 cut(s)	21, 211
SsiI	CCGC	4 cut(s)	13, 83, 115, 230
StyD4I	CCNGG	1 cut(s)	334
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	146, 159, 356
TasI	AATT	2 cut(s)	21, 211
TfiI	GAWTC	3 cut(s)	238, 319, 370
TscAI	CASTG	1 cut(s)	410
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	182, 311
TspRI	CASTG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.