Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0017050

Physical Location & Seq

Genomic Coordinates Forward (+)

4722415 .. 4724175

Gene Structure 1761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0063600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAAGATGGGTCAGGAAGTTATGACAGAGCCAAAGAAGTAAAGGAGTTTGATGAAACAAAAGCTGGAGTGAAAGGGCTAATAGACTCAGGGGGGACCAAAGTGCCAAAGTTCCTCGTTCATCCACCAGAGAACCTTTCAAGTTCAAGCACCCCAACCAGTACAGACTTCCAAGTTCCACTTATAGATCTTGACGGGCTCGATGAGGATCTCCGGCGGGTGCAGATTGTGGAGGAAATCCACAAAGCATCGGAAACATGGGGGTTCTTTCAAATGGTTAATCATGGAGTTCCAAGCAGGGTTATAGACAATTTGTTACAAGCAATAAGAGAATTTCATGAGCAGCCAGAGGAGATGAAGATGAAGTGGTACTCACGCGACTCTAAGCAAAGGGTAAGATACTACTGCAATGGAGATCTGTTGGTGGCAAAAACAGCAAACTGGAGGGATTCAATTGCTTTCGATTTCCAGGATGGTCCTTTGGACCCTGAGGCACTTCCCTCGGTTTGCAGACAGGCGGTGCAAGAATACATACAACACGTGATCAACCTAAGAGACGTGCTATCAAGTTTGTTGTCAGAGGCCTTGGGGATCAGCAGTGACTACCTAGCTGGCATAGAGTGCATGAAGAGCGAAACTCTGGTGTGCCATTATTACCCGGTATGTCCAGAACCAGACCTCACCATTGGCACAACCAATCATTCAGATCCTTCCTCCTTAACTATACTCTTACAAGACAACATCGGCGGCCTCCAAGTCCTCCACCAAGGTCACTGGGTCGACCTTCACCCAAGGCACGGAGCCCTGGTGGCTAATATTGGTGATCTTATGCAGCTTATCACCAACGACAAGTTCAAAAGCGTGGAGCATAGGGTTCTGGCAGGAAGGATTGGCCCCAGGATATCAGCTGCGTGCTTTCTCTATCCAAGTGCTACACATAGATTTAAACCTTATGGGCCAATTAAGGAGTTTCTGTCGTCTGACGACTTACCTATATATAGGGAAACTCATCTGGGAGAATATCTTGCCTATTACAAATTAAAGGGTTTAGATGGTAACTCTGCCCTTGGTCATTTTAAACTAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

362

Amino Acids

40.63

Weight (kDa)

5.5

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	59 - 159	3.7e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 307	7.1e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51890
prunus_persica	Prupe.6G275500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463291
rosa_laevigata	RLG00000024793
rosa_multiflora	Rmu_co8110798.1_g000001 Rmu_sc0002976.1_g000007
rosa_roxburghii	Rroxscaffold_6G00416700
rosa_rugosa	Rorug03G0063600
rosa_samantha	Rh3AG121500 Rh3BG126000 Rh3CG127900 Rh3DG127100
rosa_wichuraiana	Rw3G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	780
AccII	CGCG	1 cut(s)	378
AciI	CCGC	3 cut(s)	217, 518, 747
AclWI	GGATC	3 cut(s)	216, 599, 701
AcsI	RAATTY	1 cut(s)	332
AcvI	CACGTG	1 cut(s)	541
AfaI	GTAC	2 cut(s)	163, 371
AfiI	CCNNNNNNNGG	1 cut(s)	797
AflIII	ACRYGT	1 cut(s)	538
AgsI	TTSAA	5 cut(s)	141, 147, 272, 453, 856
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	3 cut(s)	468, 804, 896
AjuI	GAANNNNNNNTTGG	2 cut(s)	836, 868
AluBI	AGCT	4 cut(s)	65, 611, 835, 908
AluI	AGCT	4 cut(s)	65, 611, 835, 908
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	3 cut(s)	216, 599, 701
AoxI	GGCC	4 cut(s)	582, 748, 892, 956
ApeKI	GCWGC	3 cut(s)	343, 832, 908
ApoI	RAATTY	1 cut(s)	332
AspS9I	GGNCC	5 cut(s)	96, 476, 484, 893, 956
AsuC2I	CCSGG	1 cut(s)	659
AsuHPI	GGTGA	4 cut(s)	673, 779, 832, 833
AvaII	GGWCC	3 cut(s)	96, 476, 484
AxyI	CCTNAGG	1 cut(s)	489
BanII	GRGCYC	2 cut(s)	201, 805
BbrPI	CACGTG	1 cut(s)	541
BbvI	GCAGC	3 cut(s)	355, 844, 895
BccI	CCATC	3 cut(s)	2, 467, 1046
BcgI	CGANNNNNNTGC	2 cut(s)	483, 517
BciT130I	CCWGG	3 cut(s)	470, 806, 898
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	659
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	608
BglI	GCCNNNNNGGC	1 cut(s)	809
BglII	AGATCT	2 cut(s)	187, 415
BisI	GCNGC	4 cut(s)	344, 748, 833, 909
BlsI	GCNGC	4 cut(s)	345, 749, 834, 910
Bme1390I	CCNGG	4 cut(s)	470, 659, 806, 898
Bme18I	GGWCC	3 cut(s)	96, 476, 484
BmgBI	CACGTC	1 cut(s)	559
BmgT120I	GGNCC	5 cut(s)	96, 476, 484, 893, 956
BmiI	GGNNCC	4 cut(s)	97, 486, 802, 895
BmrFI	CCNGG	4 cut(s)	470, 659, 806, 898
BmrI	ACTGGG	1 cut(s)	784
BmsI	GCATC	1 cut(s)	257
BmuI	ACTGGG	1 cut(s)	784
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
BpmI	CTGGAG	2 cut(s)	87, 463
BpuMI	CCSGG	1 cut(s)	659
BsaAI	YACGTR	1 cut(s)	541
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	7 cut(s)	501, 585, 766, 791, 804, 896, 1066
BsaXI	ACNNNNNCTCC	4 cut(s)	792, 822, 959, 989
Bsc4I	CCNNNNNNNGG	1 cut(s)	797
Bse1I	ACTGG	3 cut(s)	159, 446, 779
Bse21I	CCTNAGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	3 cut(s)	470, 806, 898
BseDI	CCNNGG	7 cut(s)	501, 585, 766, 791, 804, 896, 1066
BseGI	GGATG	2 cut(s)	121, 478
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	797
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	102, 480
BseNI	ACTGG	3 cut(s)	159, 446, 779
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	355, 844, 895
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	4 cut(s)	584, 750, 894, 958
BsiSI	CCGG	2 cut(s)	214, 659
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	797
BsmAI	GTCTC	1 cut(s)	549
BsmBI	CGTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	4 cut(s)	584, 750, 894, 958
Bsp1286I	GDGCHC	2 cut(s)	201, 805
Bsp143I	GATC	7 cut(s)	187, 208, 415, 543, 591, 706, 823
BspACI	CCGC	3 cut(s)	217, 518, 747
BspANI	GGCC	4 cut(s)	584, 750, 894, 958
BspCNI	CTCAG	2 cut(s)	101, 481
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	4 cut(s)	97, 486, 802, 895
BspPI	GGATC	3 cut(s)	216, 599, 701
BspQI	GCTCTTC	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	3 cut(s)	159, 446, 779
BssECI	CCNNGG	7 cut(s)	501, 585, 766, 791, 804, 896, 1066
BssMI	GATC	7 cut(s)	187, 208, 415, 543, 591, 706, 823
BssT1I	CCWWGG	4 cut(s)	585, 766, 791, 1066
Bst2UI	CCWGG	3 cut(s)	470, 806, 898
Bst6I	CTCTTC	1 cut(s)	623
BstAPI	GCANNNNNTGC	1 cut(s)	621
BstBAI	YACGTR	1 cut(s)	541
BstC8I	GCNNGC	2 cut(s)	613, 913
BstDEI	CTNAG	4 cut(s)	88, 384, 489, 551
BstF5I	GGATG	2 cut(s)	121, 478
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	7 cut(s)	190, 211, 418, 546, 594, 709, 826
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	7 cut(s)	187, 208, 415, 543, 591, 706, 823
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 621, 630, 809
BstNI	CCWGG	3 cut(s)	470, 806, 898
BstSCI	CCNGG	4 cut(s)	468, 657, 804, 896
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	355, 844, 895
BstX2I	RGATCY	4 cut(s)	187, 208, 415, 706
BstYI	RGATCY	4 cut(s)	187, 208, 415, 706
Bsu36I	CCTNAGG	1 cut(s)	489
BsuRI	GGCC	4 cut(s)	584, 750, 894, 958
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	2 cut(s)	121, 478
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	2 cut(s)	604, 772
Cac8I	GCNNGC	2 cut(s)	613, 913
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	5 cut(s)	96, 476, 484, 893, 956
Csp6I	GTAC	2 cut(s)	162, 370
CviAII	CATG	4 cut(s)	258, 284, 338, 625
CviQI	GTAC	2 cut(s)	162, 370
DdeI	CTNAG	4 cut(s)	88, 384, 489, 551
DpnI	GATC	7 cut(s)	189, 210, 417, 545, 593, 708, 825
DpnII	GATC	7 cut(s)	187, 208, 415, 543, 591, 706, 823
DraI	TTTAAA	2 cut(s)	946, 1078
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
Eco130I	CCWWGG	4 cut(s)	585, 766, 791, 1066
Eco147I	AGGCCT	1 cut(s)	584
Eco24I	GRGCYC	2 cut(s)	201, 805
Eco32I	GATATC	1 cut(s)	903
Eco47I	GGWCC	3 cut(s)	96, 476, 484
Eco72I	CACGTG	1 cut(s)	541
Eco81I	CCTNAGG	1 cut(s)	489
EcoRII	CCWGG	3 cut(s)	468, 804, 896
EcoRV	GATATC	1 cut(s)	903
EcoT14I	CCWWGG	4 cut(s)	585, 766, 791, 1066
EcoT38I	GRGCYC	2 cut(s)	201, 805
ErhI	CCWWGG	4 cut(s)	585, 766, 791, 1066
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	4 cut(s)	261, 287, 341, 628
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	4 cut(s)	257, 283, 337, 624
FauI	CCCGC	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	543
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	4 cut(s)	344, 748, 833, 909
FokI	GGATG	2 cut(s)	108, 485
FriOI	GRGCYC	2 cut(s)	201, 805
Fsp4HI	GCNGC	4 cut(s)	344, 748, 833, 909
FspBI	CTAG	1 cut(s)	608
GluI	GCNGC	4 cut(s)	344, 748, 833, 909
GsuI	CTGGAG	2 cut(s)	87, 463
HaeIII	GGCC	4 cut(s)	584, 750, 894, 958
HapII	CCGG	2 cut(s)	214, 659
Hin1II	CATG	4 cut(s)	261, 287, 341, 628
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	3 cut(s)	86, 380, 449
HpaII	CCGG	2 cut(s)	214, 659
HphI	GGTGA	4 cut(s)	673, 779, 832, 833
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	4 cut(s)	253, 580, 706, 982
Hpy188III	TCNNGA	4 cut(s)	15, 191, 338, 668
Hpy8I	GTNNAC	1 cut(s)	781
HpyAV	CCTTC	3 cut(s)	720, 794, 879
HpyCH4IV	ACGT	2 cut(s)	540, 558
HpyCH4V	TGCA	6 cut(s)	223, 408, 510, 523, 624, 832
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 621, 630, 809
HpyF3I	CTNAG	4 cut(s)	88, 384, 489, 551
HpySE526I	ACGT	2 cut(s)	540, 558
Hsp92II	CATG	4 cut(s)	261, 287, 341, 628
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	7 cut(s)	187, 208, 415, 543, 591, 706, 823
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	2 cut(s)	800, 865
Lsp1109I	GCAGC	3 cut(s)	355, 844, 895
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	2 cut(s)	540, 558
MaeIII	GTNAC	4 cut(s)	315, 599, 770, 1055
MalI	GATC	7 cut(s)	189, 210, 417, 545, 593, 708, 825
MboI	GATC	7 cut(s)	187, 208, 415, 543, 591, 706, 823
MboII	GAAGA	3 cut(s)	17, 370, 640
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	4 cut(s)	187, 208, 415, 706
MhlI	GDGCHC	2 cut(s)	201, 805
MluCI	AATT	5 cut(s)	310, 332, 453, 960, 1037
MlyI	GAGTC	2 cut(s)	80, 374
MseI	TTAA	6 cut(s)	279, 719, 945, 963, 1040, 1077
MspA1I	CMGCKG	1 cut(s)	908
MspI	CCGG	2 cut(s)	214, 659
MspR9I	CCNGG	4 cut(s)	470, 659, 806, 898
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	3 cut(s)	470, 806, 898
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	4 cut(s)	434, 621, 630, 809
NciI	CCSGG	1 cut(s)	659
NdeII	GATC	7 cut(s)	187, 208, 415, 543, 591, 706, 823
NlaIII	CATG	4 cut(s)	261, 287, 341, 628
NlaIV	GGNNCC	4 cut(s)	97, 486, 802, 895
NmuCI	GTSAC	2 cut(s)	599, 770
PagI	TCATGA	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	584
PciSI	GCTCTTC	1 cut(s)	623
PfeI	GAWTC	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	4 cut(s)	345, 749, 834, 910
PleI	GAGTC	2 cut(s)	80, 374
PmaCI	CACGTG	1 cut(s)	541
PmlI	CACGTG	1 cut(s)	541
PpsI	GAGTC	2 cut(s)	80, 374
Ppu21I	YACGTR	1 cut(s)	541
Psp6I	CCWGG	3 cut(s)	468, 804, 896
PspCI	CACGTG	1 cut(s)	541
PspGI	CCWGG	3 cut(s)	468, 804, 896
PspN4I	GGNNCC	4 cut(s)	97, 486, 802, 895
PspPI	GGNCC	5 cut(s)	96, 476, 484, 893, 956
PsuI	RGATCY	4 cut(s)	187, 208, 415, 706
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	2 cut(s)	163, 371
RsaNI	GTAC	2 cut(s)	162, 370
SalI	GTCGAC	1 cut(s)	779
SapI	GCTCTTC	1 cut(s)	623
SaqAI	TTAA	6 cut(s)	279, 719, 945, 963, 1040, 1077
SatI	GCNGC	4 cut(s)	344, 748, 833, 909
Sau3AI	GATC	7 cut(s)	187, 208, 415, 543, 591, 706, 823
Sau96I	GGNCC	5 cut(s)	96, 476, 484, 893, 956
SchI	GAGTC	2 cut(s)	80, 374
ScrFI	CCNGG	4 cut(s)	470, 659, 806, 898
SduI	GDGCHC	2 cut(s)	201, 805
SfaNI	GCATC	1 cut(s)	257
SinI	GGWCC	3 cut(s)	96, 476, 484
Sse9I	AATT	5 cut(s)	310, 332, 453, 960, 1037
SseBI	AGGCCT	1 cut(s)	584
SsiI	CCGC	3 cut(s)	217, 518, 747
SspI	AATATT	1 cut(s)	817
SspMI	CTAG	1 cut(s)	608
StuI	AGGCCT	1 cut(s)	584
StyD4I	CCNGG	4 cut(s)	468, 657, 804, 896
StyI	CCWWGG	4 cut(s)	585, 766, 791, 1066
TaiI	ACGT	2 cut(s)	543, 561
TaqI	TCGA	3 cut(s)	201, 462, 780
TasI	AATT	5 cut(s)	310, 332, 453, 960, 1037
TatI	WGTACW	1 cut(s)	161
TauI	GCSGC	1 cut(s)	750
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	6 cut(s)	279, 719, 945, 963, 1040, 1077
Tru9I	TTAA	6 cut(s)	279, 719, 945, 963, 1040, 1077
TscAI	CASTG	2 cut(s)	604, 779
TseFI	GTSAC	2 cut(s)	599, 770
TseI	GCWGC	3 cut(s)	343, 832, 908
Tsp45I	GTSAC	2 cut(s)	599, 770
TspDTI	ATGAA	6 cut(s)	69, 110, 326, 371, 377, 641
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	2 cut(s)	604, 779
VpaK11BI	GGWCC	3 cut(s)	96, 476, 484
XapI	RAATTY	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	780
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.