Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0017050

Physical Location & Seq

Genomic Coordinates Forward (+)

38626737 .. 38627572

Gene Structure 836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCATCGTTCGGATCCGGGTCTACCCGCCCCTTCGACGACGGAGAGACTCAATCTCCGCCGTCGATCTTTTCAACCGGCGGTGTATTTGGAAGCACCGAGGCGGAGGAGGGGCTTGCCCTGAGAGAGTGGCGGAGGCGGAATGCGATTGAGCTGGGGGAGAAGGAGAAGAGGGAGAAGGAGAAGCTGAAGCAGATAATAGAGGAAGCGGAGGCGTACAAAATGGAATTCTACAGGAAGCGGGAGCTGAACGTGGAGAAGAAGAAGGTTTCGAACAGAGAAGTCGAGAGGGTATTTCTGGAAAACCAGGAGAAGTTTCATGCAGAAGCTGAGAGGAATTACTGGAAAGCAGTTGCGGAGATGATTCCTCGTGAGGTTGCAGCGATTGAGAACAGGGGGAAGAGAGAGAAGGAGAAGAAGACGGGCTCTGTGGTTGTGATTCGTGGGCCGAAGCCTGGGAAGCCCACCGATCTTTCGAGGATGCGTCAGATTCTGGTGAAGCTGAAGCAGAGTCCTCCTGCTCACTGGAAACCTAAGCCAGAGGAGGTGGCTGTGGCTCATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

188

Amino Acids

21.61

Weight (kDa)

9.49

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	32 - 138	3.6e-09	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51890
prunus_persica	Prupe.6G275500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463291
rosa_laevigata	RLG00000024793
rosa_multiflora	Rmu_co8110798.1_g000001 Rmu_sc0002976.1_g000007
rosa_roxburghii	Rroxscaffold_6G00416700
rosa_rugosa	Rorug03G0063600
rosa_samantha	Rh3AG121500 Rh3BG126000 Rh3CG127900 Rh3DG127100
rosa_wichuraiana	Rw3G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	9 cut(s)	28, 59, 81, 104, 133, 139, 209, 241, 356
AclWI	GGATC	2 cut(s)	9, 22
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	2 cut(s)	209, 524
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	455
AgsI	TTSAA	1 cut(s)	75
AjnI	CCWGG	2 cut(s)	306, 454
AluBI	AGCT	5 cut(s)	154, 187, 247, 329, 502
AluI	AGCT	5 cut(s)	154, 187, 247, 329, 502
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	9, 22
AlwNI	CAGNNNCTG	2 cut(s)	329, 493
AoxI	GGCC	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	446
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	508
AsuII	TTCGAA	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	428
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	2 cut(s)	308, 456
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	232
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	3 cut(s)	19, 308, 456
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	3 cut(s)	19, 308, 456
BmsI	GCATC	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	425
Bpu10I	CCTNAGC	1 cut(s)	534
Bpu14I	TTCGAA	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	99, 455
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	2 cut(s)	347, 530
BseBI	CCWGG	2 cut(s)	308, 456
BseDI	CCNNGG	2 cut(s)	99, 455
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMII	CTCAG	2 cut(s)	113, 321
BseNI	ACTGG	2 cut(s)	347, 530
BseRI	GAGGAG	2 cut(s)	122, 557
BseXI	GCAGC	1 cut(s)	392
BseYI	CCCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	448
BsiSI	CCGG	2 cut(s)	18, 78
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	448
Bsp119I	TTCGAA	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	3 cut(s)	14, 66, 469
BspACI	CCGC	9 cut(s)	28, 59, 81, 104, 133, 139, 209, 241, 356
BspANI	GGCC	1 cut(s)	448
BspCNI	CTCAG	2 cut(s)	114, 322
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	9, 22
BspT104I	TTCGAA	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	347, 530
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	99, 455
BssMI	GATC	3 cut(s)	14, 66, 469
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	2 cut(s)	308, 456
Bst6I	CTCTTC	2 cut(s)	164, 395
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	4 cut(s)	122, 330, 534, 564
BstF5I	GGATG	1 cut(s)	486
BstKTI	GATC	3 cut(s)	17, 69, 472
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	3 cut(s)	14, 66, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstNI	CCWGG	2 cut(s)	308, 456
BstSCI	CCNGG	3 cut(s)	17, 306, 454
BstSFI	CTRYAG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	392
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	2 cut(s)	329, 493
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	446
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	320, 560
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	4 cut(s)	122, 330, 534, 564
DpnI	GATC	3 cut(s)	16, 68, 471
DpnII	GATC	3 cut(s)	14, 66, 469
Eam1104I	CTCTTC	2 cut(s)	164, 395
EarI	CTCTTC	2 cut(s)	164, 395
EciI	GGCGGA	4 cut(s)	48, 119, 148, 154
Eco24I	GRGCYC	1 cut(s)	428
Eco57I	CTGAAG	2 cut(s)	209, 524
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	306, 454
EcoT38I	GRGCYC	1 cut(s)	428
FaeI	CATG	2 cut(s)	323, 563
FaiI	YATR	2 cut(s)	321, 561
FatI	CATG	2 cut(s)	319, 559
FauI	CCCGC	2 cut(s)	35, 234
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	1 cut(s)	493
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	381
GsaI	CCCAGC	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	448
HapII	CCGG	2 cut(s)	18, 78
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	2 cut(s)	323, 563
HinfI	GANTC	5 cut(s)	49, 364, 439, 490, 511
HpaII	CCGG	2 cut(s)	18, 78
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	2 cut(s)	14, 489
Hpy188III	TCNNGA	3 cut(s)	286, 299, 371
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	3 cut(s)	41, 44, 67
HpyAV	CCTTC	5 cut(s)	43, 157, 172, 259, 403
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	323, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	4 cut(s)	122, 330, 534, 564
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	323, 563
Kzo9I	GATC	3 cut(s)	14, 66, 469
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	1 cut(s)	471
MaeII	ACGT	1 cut(s)	252
MalI	GATC	3 cut(s)	16, 68, 471
MboI	GATC	3 cut(s)	14, 66, 469
MboII	GAAGA	6 cut(s)	181, 271, 274, 412, 427, 430
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	2 cut(s)	227, 337
MlyI	GAGTC	2 cut(s)	43, 520
MspI	CCGG	2 cut(s)	18, 78
MspR9I	CCNGG	3 cut(s)	19, 308, 456
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	2 cut(s)	308, 456
MwoI	GCNNNNNNNGC	1 cut(s)	460
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	3 cut(s)	14, 66, 469
NlaIII	CATG	2 cut(s)	323, 563
NlaIV	GGNNCC	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	272
PctI	GAATGC	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	364, 439, 490
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	2 cut(s)	43, 519
PpsI	GAGTC	2 cut(s)	43, 519
Psp6I	CCWGG	2 cut(s)	306, 454
PspFI	CCCAGC	1 cut(s)	154
PspGI	CCWGG	2 cut(s)	306, 454
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	446
PstNI	CAGNNNCTG	2 cut(s)	329, 493
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	3 cut(s)	14, 66, 469
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	2 cut(s)	43, 520
ScrFI	CCNGG	3 cut(s)	19, 308, 456
SduI	GDGCHC	1 cut(s)	428
SfaNI	GCATC	1 cut(s)	471
SfcI	CTRYAG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	272
Sse9I	AATT	2 cut(s)	227, 337
SsiI	CCGC	9 cut(s)	28, 59, 81, 104, 133, 139, 209, 241, 356
StyD4I	CCNGG	3 cut(s)	17, 306, 454
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	5 cut(s)	36, 65, 272, 285, 476
TasI	AATT	2 cut(s)	227, 337
TfiI	GAWTC	3 cut(s)	364, 439, 490
TscAI	CASTG	1 cut(s)	530
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	530
XapI	RAATTY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.