Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0017050

Physical Location & Seq

Genomic Coordinates Reverse (-)

9891973 .. 9892641

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G010320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTCATCGTTCGGATCCGGGTCCACCCGCCCCTTCGACGACGGAGAGACTGAATCTCCGCCGTCGATCTTTTCAACCGGCGGTGGATTTGGAAGCTCCGAGGCGGAGGAGGGGGTTGCCCTGACAGAGTGGCGGAGGCGGAATGCAATTGAGCTGGGGGAGAAGGAGAAGAAGGAGAAGGAGAAGCTGAAGCAGATAATAGAGGAAGCGGAGGCGTTCAAAGTGGAGTTCTACAGGAAGCGGGAGCTGAACGTGGAGAAGAAGAAGGCTTCGAACAGAGAATTTCATGCAGAAGCTGAGAGGAATTACTGGAAAGCAGTTGCGGAGATGATTCCTCGTGAGGTTGCAGCGATTGATCAGAAGAGGGGGAAGAGAGCAGACAAGGAGAAGAAGACGGGTTCTGTGGTTGTGATTCATGGGCCGAAGCCTGGGAAGCCCACCGATCTTTCGAGGATGCGTCAGATTCTGGTGAAGCTGAAGCAGAGTCCTCCTGCTCACTGGAACCCTAAGCCAGAGGACGTGGCTGTGGCTCATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

179

Amino Acids

20.14

Weight (kDa)

9.3

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	33 - 163	8.4e-07	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51890
prunus_persica	Prupe.6G275500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463291
rosa_laevigata	RLG00000024793
rosa_multiflora	Rmu_co8110798.1_g000001 Rmu_sc0002976.1_g000007
rosa_roxburghii	Rroxscaffold_6G00416700
rosa_rugosa	Rorug03G0063600
rosa_samantha	Rh3AG121500 Rh3BG126000 Rh3CG127900 Rh3DG127100
rosa_wichuraiana	Rw3G010320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	28, 59, 81, 104, 133, 139, 209, 241, 323
AclWI	GGATC	2 cut(s)	9, 22
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	2 cut(s)	209, 497
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	75, 220
AjiI	CACGTC	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	6 cut(s)	96, 154, 187, 247, 296, 475
AluI	AGCT	6 cut(s)	96, 154, 187, 247, 296, 475
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	9, 22
AlwNI	CAGNNNCTG	2 cut(s)	296, 466
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	21, 419
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	481
AsuII	TTCGAA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	21
BamHI	GGATCC	1 cut(s)	14
BauI	CACGAG	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	359
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	429
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	232
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	2 cut(s)	19, 429
Bme18I	GGWCC	1 cut(s)	21
BmgBI	CACGTC	1 cut(s)	520
BmgT120I	GGNCC	2 cut(s)	21, 419
BmiI	GGNNCC	3 cut(s)	16, 22, 503
BmrFI	CCNGG	2 cut(s)	19, 429
BmsI	GCATC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	398
Bpu10I	CCTNAGC	1 cut(s)	507
Bpu14I	TTCGAA	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	99, 428
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	2 cut(s)	314, 503
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	99, 428
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	2 cut(s)	314, 503
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	359
BseYI	CCCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	421
BsiSI	CCGG	2 cut(s)	18, 78
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	421
Bsp119I	TTCGAA	1 cut(s)	272
Bsp143I	GATC	4 cut(s)	14, 66, 355, 442
BspACI	CCGC	9 cut(s)	28, 59, 81, 104, 133, 139, 209, 241, 323
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	16, 22, 503
BspPI	GGATC	2 cut(s)	9, 22
BspT104I	TTCGAA	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	314, 503
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	99, 428
BssMI	GATC	4 cut(s)	14, 66, 355, 442
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	429
Bst6I	CTCTTC	2 cut(s)	356, 365
BstBI	TTCGAA	1 cut(s)	272
BstDEI	CTNAG	3 cut(s)	297, 507, 537
BstF5I	GGATG	1 cut(s)	459
BstKTI	GATC	4 cut(s)	17, 69, 358, 445
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	4 cut(s)	14, 66, 355, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	17, 427
BstSFI	CTRYAG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	359
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	421
BtrI	CACGTC	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	496
CaiI	CAGNNNCTG	2 cut(s)	296, 466
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	21, 419
CseI	GACGC	1 cut(s)	446
CviAII	CATG	3 cut(s)	287, 416, 533
DdeI	CTNAG	3 cut(s)	297, 507, 537
DpnI	GATC	4 cut(s)	16, 68, 357, 444
DpnII	GATC	4 cut(s)	14, 66, 355, 442
Eam1104I	CTCTTC	2 cut(s)	356, 365
EarI	CTCTTC	2 cut(s)	356, 365
EciI	GGCGGA	4 cut(s)	48, 119, 148, 154
Eco47I	GGWCC	1 cut(s)	21
Eco57I	CTGAAG	2 cut(s)	209, 497
EcoRII	CCWGG	1 cut(s)	427
FaeI	CATG	3 cut(s)	290, 419, 536
FaiI	YATR	3 cut(s)	288, 417, 534
FatI	CATG	3 cut(s)	286, 415, 532
FauI	CCCGC	2 cut(s)	35, 234
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	348
GsaI	CCCAGC	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	421
HapII	CCGG	2 cut(s)	18, 78
HgaI	GACGC	1 cut(s)	446
Hin1II	CATG	3 cut(s)	290, 419, 536
HinfI	GANTC	5 cut(s)	53, 331, 412, 463, 484
HpaII	CCGG	2 cut(s)	18, 78
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	4 cut(s)	14, 100, 360, 462
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	3 cut(s)	41, 44, 67
HpyAV	CCTTC	5 cut(s)	43, 157, 166, 172, 259
HpyCH4IV	ACGT	2 cut(s)	252, 519
HpyCH4V	TGCA	3 cut(s)	146, 290, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	3 cut(s)	297, 507, 537
HpySE526I	ACGT	2 cut(s)	252, 519
Hsp92II	CATG	3 cut(s)	290, 419, 536
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	14, 66, 355, 442
LmnI	GCTCC	2 cut(s)	101, 244
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	1 cut(s)	444
MaeII	ACGT	2 cut(s)	252, 519
MalI	GATC	4 cut(s)	16, 68, 357, 444
MboI	GATC	4 cut(s)	14, 66, 355, 442
MboII	GAAGA	7 cut(s)	181, 271, 274, 373, 382, 400, 403
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	14
MluCI	AATT	3 cut(s)	147, 281, 304
MlyI	GAGTC	1 cut(s)	493
MspI	CCGG	2 cut(s)	18, 78
MspR9I	CCNGG	2 cut(s)	19, 429
MunI	CAATTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	433
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	4 cut(s)	14, 66, 355, 442
NlaIII	CATG	3 cut(s)	290, 419, 536
NlaIV	GGNNCC	3 cut(s)	16, 22, 503
NspV	TTCGAA	1 cut(s)	272
PctI	GAATGC	1 cut(s)	148
PfeI	GAWTC	4 cut(s)	53, 331, 412, 463
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	3 cut(s)	16, 22, 503
PspPI	GGNCC	2 cut(s)	21, 419
PstNI	CAGNNNCTG	2 cut(s)	296, 466
PsuI	RGATCY	1 cut(s)	14
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	4 cut(s)	14, 66, 355, 442
Sau96I	GGNCC	2 cut(s)	21, 419
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	19, 429
SetI	ASST	9 cut(s)	98, 156, 189, 249, 255, 298, 345, 477, 522
SfaNI	GCATC	1 cut(s)	444
SfcI	CTRYAG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	272
SinI	GGWCC	1 cut(s)	21
Sse9I	AATT	3 cut(s)	147, 281, 304
SsiI	CCGC	9 cut(s)	28, 59, 81, 104, 133, 139, 209, 241, 323
StyD4I	CCNGG	2 cut(s)	17, 427
TaiI	ACGT	2 cut(s)	255, 522
TaqI	TCGA	4 cut(s)	36, 65, 272, 449
TasI	AATT	3 cut(s)	147, 281, 304
TfiI	GAWTC	4 cut(s)	53, 331, 412, 463
TscAI	CASTG	1 cut(s)	503
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	2 cut(s)	275, 404
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.