AT3G52080

cation H( ) antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014942
Physical Location & Seq
Forward (+)
19314966 .. 19317988
3023 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52080.1

Sequence Viewer

Length: 2406 bp
ATGAATTCAACTACAACAAAAAACGTTTGTGGAGACAAATGGTACCTTAACCTAGACAGGCCAGAAGAGGCATTGAAGATTCTTGTATTCATTGCCATTTTCGTCGTCCGAACTCTCCTCCATTATCTCATGAAGCCTCTAGGCCAACCTTACCTCACCACCGACTTTGCTATAGGGCTAATTCTAGGTAATATTCCAAGGTTTCGAGGGGCATTCTCGGGGCCTTACTCTATAACCCTCAACAACATAATAGAATTTGGAATGATCTGCCATATGTTTGTCATGGGTCTAGAGATGAATCCAAGCGTTCTTCTCAGACCACCAACCAAAGATGCATTCATTGCCTACACAAGCATGATCACGACCTTTGTTCTCGCCTTTGTCACAACTCCTTTCCTCCACTATACCAAAACTTCTCCTTACATTTTCTCCCTCGCCCTCTCCCTCATGGCCTCAAGCACCGGTTCTCCTATCCTAACCCGCGTCATCGCCAATCTCAAAATCAGAAAATCCGATCTTGGAAAACTTGCATCAGCCGCAGGTGTCCATACGGACATGATCTCTACCTTGCTTTACTGCTTCGGCTTCATTTTCTTCCCTACGGAGAAACCTCTCGCTCGTCCTCTCCACAGATTCTTCAGAGCCCTCCTCATGTTTTGCCTCTTCCTCGCTCAGGTCACTTTCACTTCCATTGTATCCCCAATCTTTCTTAATTGGGTCAACAACGAGAACCCTGAAGGTAAACCACTCAAGGGGTCACACCTTGTTATGTCCCTGGCATTTGTCGTCTTGATCTGCAGTTTCCCAACTTGGCCACCTGAATCAATGTACAACCCAATTCTCAGTGCATTCACGGCTGGTCTCTTCCTTCCAAACAAAGGAAGAATGTCGAAATGGATCATCAACAAAATCAATTACTTGCTCAGCACGGTCTTCTACCCTATCTTCTTCTTCTGGGTTGGATTCATAATCCACATGAGAAACTTTGACATTACTGACAAAATGGCGTGGGTAAGATTCTTTTCTCTTCTTGGCACTGTTATAGCCGGAAAAGTCACCGGAACAGTCTTGTGTGGTTTACTACTCGGTTATCATGTCCCGGAAACCGCATCCTTAGGACTGCTTTTGACCACTAAAGGCCATTTTCATGTCTACTTGGCAGCTTTAGCCATTCGGACTAACAGGGTGAAAAGTACGACCGGTGCATTGATCATATTTATCATTGTCTTCACGGTGGTCTACTCCCCATTCGTGGTCATGGACATCATCAAACGCGCTAGAAAGCGGGTGCCTGTGCACATCATGGCGCTTCAATGGCTCGATCCAACAACTGAACTTCGGATCTTGATTGGTCTCCACGGTCCCCACAACATTGGTTCTACGCTCAACGTTATGGAGATCTGCCATGGTGGCCGTGAGCCGGGTTCCATATTCTATGCGACTGACATGGTGGAGTTGACTGATGAGATTGCAGCCACGCTGAAGAAGGGCGGAGGAGCCGGTCAGAGTAATGATTCAGTGACGGTAACGGATAGGTCGGTGACGGAAATGAGAGAGAGTATAACGGCAGCTGTGAATGGGTACGGAGAGCTCCGCAATGGACAAGGTGTGACAGTGCGGCGGATGCTGGCGTTGTCCACGTTTGTGACCATGGCCCATGACGTCTGCGGTTTGGCTGATGAACTTATGGTTTCCATTATAATTCTACCGTTCCATAAACGGCTGAATCCTGATGGTACTCTCGATGCTGGTCATGCTGGGTTCCGTCATGTGAACCGCAAGATTCTGAAGAACGCACCATGTTCAGTAGGAATTCTTGTGGATAGGTCGTTCGGGCAAACAGAAGAGGCATGGAGACCAGGAGCGTCCATGGGCATTGCTATAATATTCATAGGTGGCAGAGACGACCGAGAGGCACTAGCCTTCGCTGCACAAGTGGCTCGACATCCTGCTGTGAAATTAAAGGTTATACGTTTCTTGGAAGACAAGAGCTCTCAAAACGCACAAAAACGAAGCAGCATCCTGAACAGAGCGAGTGTGGTAGATCAAGAGGAGGAAATGAAGCTTGATGATGAATGTTTTGCTGAGTTCTACGAAAGATACATAGCTGGAGGTGGAAGAGTGTCTTACATGGAGAAGCATCTCACCAACTCCTCTGAGACTTTCACAGCTCTTAAATCACTAGATGGAGAGTATGGGCTGGTGATTGTAGGAAGAGGAGGGGGAAGAGCGAGCAGTGGGTTAACCACCGGCCTCAACGACTGGCAGCAATGTCCAGAGCTTGGTCCCATAGGTGACGTTCTTTCAGGATCAGATTTCTCACACAACACATCAATGTTAATTATTCAGCAGCAGCGTACTCGGGGTCAGCTAGAAGGGCTTCATGATGACTTCACTATACTGTGA

Protein Analysis

801

Amino Acids

88.71

Weight (kDa)

8.98

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 38 - 418 1.3e-23 Sodium/hydrogen exchanger, transmembrane
CHX17_2nd PF23256 532 - 613 9.4e-14 Plant cation/H(+) antiporter domain
CHX17_C PF23259 623 - 785 1.1e-09 Plant cation/H(+) antiporter, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52080
fragaria_vesca FvH4_7g01210 FvH4_7g01210
malus_domestica MD02G1308800.v1.1 MD07G1013200.v1.1
prunus_persica Prupe.2G016700_v2.0.a1 Prupe.2G016700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0316681
rosa_laevigata RLG00000030644
rosa_multiflora Rmu_sc0005539.1_g000005
rosa_roxburghii Rroxscaffold_4G00330860
rosa_samantha Rh1AG022700 Rh1BG021200 Rh1CG019800 Rh1DG017200
rosa_wichuraiana Rw1G001460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1700
AarI CACCTGC 1 cut(s) 530
AatII GACGTC 1 cut(s) 1665
Acc36I ACCTGC 1 cut(s) 530
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 2 cut(s) 42, 1288
AccB7I CCANNNNNTGG 1 cut(s) 2282
AccI GTMKAC 2 cut(s) 1152, 1239
AccII CGCG 2 cut(s) 483, 1275
AclI AACGTT 2 cut(s) 24, 1389
AclWI GGATC 4 cut(s) 905, 1316, 1349, 2317
AcoI YGGCCR 2 cut(s) 812, 1411
AcsI RAATTY 3 cut(s) 4, 254, 1812
AcuI CTGAAG 4 cut(s) 622, 756, 1502, 1808
AcyI GRCGYC 1 cut(s) 1662
AfaI GTAC 6 cut(s) 44, 830, 1195, 1583, 1738, 2359
AfiI CCNNNNNNNGG 6 cut(s) 673, 752, 878, 1252, 1420, 2282
AgeI ACCGGT 2 cut(s) 461, 1199
AgsI TTSAA 3 cut(s) 9, 76, 1313
AjnI CCWGG 2 cut(s) 774, 1858
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AleI CACNNNNGTG 1 cut(s) 1643
AloI GAACNNNNNNTCC 2 cut(s) 1814, 1846
AluBI AGCT 9 cut(s) 1163, 1571, 1591, 1992, 2065, 2108, 2171, 2281, 2371
AluI AGCT 9 cut(s) 1163, 1571, 1591, 1992, 2065, 2108, 2171, 2281, 2371
Alw21I GWGCWC 3 cut(s) 1299, 1593, 1994
Alw26I GTCTC 6 cut(s) 27, 866, 1358, 1849, 1896, 2153
Alw44I GTGCAC 1 cut(s) 1295
AlwI GGATC 4 cut(s) 905, 1316, 1349, 2317
Ama87I CYCGRG 2 cut(s) 217, 2361
AoxI GGCC 9 cut(s) 59, 142, 221, 450, 812, 1138, 1411, 1653, 2251
ApaLI GTGCAC 1 cut(s) 1295
ApeKI GCWGC 8 cut(s) 1160, 1472, 1568, 1928, 2016, 2266, 2350, 2353
ApoI RAATTY 3 cut(s) 4, 254, 1812
AsiGI ACCGGT 2 cut(s) 461, 1199
Asp700I GAANNNNTTC 1 cut(s) 2379
Asp718I GGTACC 1 cut(s) 42
AspLEI GCGC 2 cut(s) 1277, 1309
AspS9I GGNCC 4 cut(s) 221, 1361, 1654, 2285
AsuC2I CCSGG 2 cut(s) 1100, 1422
AsuHPI GGTGA 7 cut(s) 148, 1048, 1198, 1552, 2137, 2215, 2306
AvaI CYCGRG 2 cut(s) 217, 2361
AvaII GGWCC 2 cut(s) 1361, 2285
AxyI CCTNAGG 1 cut(s) 1114
BaeGI GKGCMC 1 cut(s) 1299
BalI TGGCCA 1 cut(s) 814
BanI GGYRCC 2 cut(s) 42, 1288
BanII GRGCYC 3 cut(s) 646, 1593, 1994
BbsI GAAGAC 3 cut(s) 925, 1219, 1989
Bbv12I GWGCWC 3 cut(s) 1299, 1593, 1994
BbvI GCAGC 8 cut(s) 1172, 1484, 1580, 1915, 2028, 2278, 2362, 2365
BccI CCATC 2 cut(s) 1727, 2180
BceAI ACGGC 4 cut(s) 870, 1398, 1581, 1736
BcgI CGANNNNNNTGC 2 cut(s) 2342, 2376
BciT130I CCWGG 2 cut(s) 776, 1860
BciVI GTATCC 1 cut(s) 706
BclI TGATCA 2 cut(s) 357, 1209
BcnI CCSGG 2 cut(s) 1100, 1422
BcoDI GTCTC 6 cut(s) 27, 866, 1358, 1849, 1896, 2153
BfaI CTAG 8 cut(s) 53, 140, 185, 290, 1278, 1919, 2183, 2372
BfmI CTRYAG 2 cut(s) 171, 796
BfoI RGCGCY 1 cut(s) 1310
BfuAI ACCTGC 1 cut(s) 530
BfuI GTATCC 1 cut(s) 706
BglI GCCNNNNNGGC 1 cut(s) 1410
BglII AGATCT 1 cut(s) 1398
BlpI GCTNAGC 1 cut(s) 923
Bme1390I CCNGG 4 cut(s) 776, 1100, 1422, 1860
Bme18I GGWCC 2 cut(s) 1361, 2285
BmeT110I CYCGRG 2 cut(s) 217, 2361
BmgT120I GGNCC 4 cut(s) 221, 1361, 1654, 2285
BmiI GGNNCC 8 cut(s) 44, 222, 1290, 1363, 1426, 1498, 1763, 2287
BmrFI CCNGG 4 cut(s) 776, 1100, 1422, 1860
BmsI GCATC 7 cut(s) 322, 539, 1118, 1614, 1735, 2028, 2149
BpiI GAAGAC 3 cut(s) 925, 1219, 1989
BplI GAGNNNNNCTC 2 cut(s) 633, 665
BpmI CTGGAG 1 cut(s) 2130
Bpu10I CCTNAGC 1 cut(s) 672
Bpu1102I GCTNAGC 1 cut(s) 923
BpuEI CTTGAG 2 cut(s) 439, 734
BpuMI CCSGG 2 cut(s) 1100, 1422
BsaHI GRCGYC 1 cut(s) 1662
BsaI GGTCTC 3 cut(s) 866, 1358, 1849
BsaJI CCNNGG 6 cut(s) 197, 774, 1357, 1405, 1650, 1869
BsaWI WCCGGW 3 cut(s) 461, 1058, 1199
BsaXI ACNNNNNCTCC 4 cut(s) 413, 443, 451, 481
Bsc4I CCNNNNNNNGG 6 cut(s) 673, 752, 878, 1252, 1420, 2282
Bse118I RCCGGY 4 cut(s) 461, 1199, 1499, 2249
Bse1I ACTGG 1 cut(s) 2267
Bse21I CCTNAGG 1 cut(s) 1114
Bse3DI GCAATG 5 cut(s) 90, 339, 1603, 1875, 2276
BseBI CCWGG 2 cut(s) 776, 1860
BseDI CCNNGG 6 cut(s) 197, 774, 1357, 1405, 1650, 1869
BseGI GGATG 4 cut(s) 1109, 1629, 1945, 2019
BseLI CCNNNNNNNGG 6 cut(s) 673, 752, 878, 1252, 1420, 2282
BseMI GCAATG 5 cut(s) 90, 339, 1603, 1875, 2276
BseMII CTCAG 6 cut(s) 328, 686, 856, 937, 2076, 2148
BseNI ACTGG 1 cut(s) 2267
BseRI GAGGAG 6 cut(s) 107, 638, 1509, 2066, 2143, 2232
BseSI GKGCMC 1 cut(s) 1299
BseXI GCAGC 8 cut(s) 1172, 1484, 1580, 1915, 2028, 2278, 2362, 2365
BseYI CCCAGC 1 cut(s) 1757
BsgI GTGCAG 1 cut(s) 1914
Bsh1236I CGCG 2 cut(s) 483, 1275
Bsh1285I CGRYCG 2 cut(s) 1200, 1909
BshFI GGCC 9 cut(s) 61, 144, 223, 452, 814, 1140, 1413, 1655, 2253
BshNI GGYRCC 2 cut(s) 42, 1288
BshTI ACCGGT 2 cut(s) 461, 1199
BsiEI CGRYCG 2 cut(s) 1200, 1909
BsiHKAI GWGCWC 3 cut(s) 1299, 1593, 1994
BsiHKCI CYCGRG 2 cut(s) 217, 2361
BsiSI CCGG 8 cut(s) 462, 1047, 1059, 1100, 1200, 1421, 1500, 2250
BslFI GGGAC 4 cut(s) 757, 1082, 1347, 2271
BslI CCNNNNNNNGG 6 cut(s) 673, 752, 878, 1252, 1420, 2282
BsmAI GTCTC 6 cut(s) 27, 866, 1358, 1849, 1896, 2153
BsmBI CGTCTC 1 cut(s) 1896
BsmFI GGGAC 4 cut(s) 757, 1082, 1347, 2271
BsmI GAATGC 3 cut(s) 212, 335, 848
BsnI GGCC 9 cut(s) 61, 144, 223, 452, 814, 1140, 1413, 1655, 2253
Bso31I GGTCTC 3 cut(s) 866, 1358, 1849
BsoBI CYCGRG 2 cut(s) 217, 2361
Bsp1286I GDGCHC 4 cut(s) 646, 1299, 1593, 1994
Bsp1407I TGTACA 1 cut(s) 828
Bsp1720I GCTNAGC 1 cut(s) 923
Bsp19I CCATGG 3 cut(s) 1405, 1650, 1869
BspANI GGCC 9 cut(s) 61, 144, 223, 452, 814, 1140, 1413, 1655, 2253
BspCNI CTCAG 6 cut(s) 327, 685, 855, 936, 2077, 2149
BspFNI CGCG 2 cut(s) 483, 1275
BspHI TCATGA 2 cut(s) 129, 2383
BspLI GGNNCC 8 cut(s) 44, 222, 1290, 1363, 1426, 1498, 1763, 2287
BspMAI CTGCAG 1 cut(s) 800
BspMI ACCTGC 1 cut(s) 530
BspPI GGATC 4 cut(s) 905, 1316, 1349, 2317
BspQI GCTCTTC 1 cut(s) 2221
BspT107I GGYRCC 2 cut(s) 42, 1288
BspTNI GGTCTC 3 cut(s) 866, 1358, 1849
BsrDI GCAATG 5 cut(s) 90, 339, 1603, 1875, 2276
BsrFI RCCGGY 4 cut(s) 461, 1199, 1499, 2249
BsrGI TGTACA 1 cut(s) 828
BsrI ACTGG 1 cut(s) 2267
BssAI RCCGGY 4 cut(s) 461, 1199, 1499, 2249
BssECI CCNNGG 6 cut(s) 197, 774, 1357, 1405, 1650, 1869
BssNI GRCGYC 1 cut(s) 1662
BssT1I CCWWGG 4 cut(s) 197, 1405, 1650, 1869
Bst2UI CCWGG 2 cut(s) 776, 1860
Bst4CI ACNGT 9 cut(s) 931, 1039, 1066, 1234, 1361, 1525, 1615, 1710, 2403
Bst6I CTCTTC 8 cut(s) 60, 668, 869, 1032, 1839, 2113, 2209, 2221
BstACI GRCGYC 1 cut(s) 1662
BstAPI GCANNNNNTGC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 828
BstC8I GCNNGC 2 cut(s) 1629, 2233
BstDEI CTNAG 7 cut(s) 314, 672, 842, 923, 1114, 2085, 2157
BstDSI CCRYGG 4 cut(s) 1357, 1405, 1650, 1869
BstENI CCTNNNNNAGG 1 cut(s) 671
BstF5I GGATG 4 cut(s) 1109, 1629, 1945, 2019
BstFNI CGCG 2 cut(s) 483, 1275
BstH2I RGCGCY 1 cut(s) 1310
BstHHI GCGC 2 cut(s) 1277, 1309
BstMAI GTCTC 6 cut(s) 27, 866, 1358, 1849, 1896, 2153
BstMCI CGRYCG 2 cut(s) 1200, 1909
BstNI CCWGG 2 cut(s) 776, 1860
BstSCI CCNGG 4 cut(s) 774, 1098, 1420, 1858
BstSFI CTRYAG 2 cut(s) 171, 796
BstSLI GKGCMC 1 cut(s) 1299
BstUI CGCG 2 cut(s) 483, 1275
BstV1I GCAGC 8 cut(s) 1172, 1484, 1580, 1915, 2028, 2278, 2362, 2365
BstV2I GAAGAC 3 cut(s) 925, 1219, 1989
BstX2I RGATCY 2 cut(s) 1341, 1398
BstXI CCANNNNNNTGG 1 cut(s) 1373
BstYI RGATCY 2 cut(s) 1341, 1398
Bsu36I CCTNAGG 1 cut(s) 1114
BsuI GTATCC 1 cut(s) 706
BsuRI GGCC 9 cut(s) 61, 144, 223, 452, 814, 1140, 1413, 1655, 2253
BtgI CCRYGG 4 cut(s) 1357, 1405, 1650, 1869
BtgZI GCGATG 1 cut(s) 472
BtsCI GGATG 4 cut(s) 1109, 1629, 1945, 2019
BtsI GCAGTG 1 cut(s) 2242
BtsIMutI CAGTG 5 cut(s) 850, 1035, 1524, 1620, 2242
BveI ACCTGC 1 cut(s) 530
Cac8I GCNNGC 2 cut(s) 1629, 2233
CciI TCATGA 2 cut(s) 129, 2383
CfoI GCGC 2 cut(s) 1277, 1309
Cfr10I RCCGGY 4 cut(s) 461, 1199, 1499, 2249
Cfr13I GGNCC 4 cut(s) 221, 1361, 1654, 2285
CseI GACGC 2 cut(s) 472, 1854
Csp6I GTAC 6 cut(s) 43, 829, 1194, 1582, 1737, 2358
CspAI ACCGGT 2 cut(s) 461, 1199
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviQI GTAC 6 cut(s) 43, 829, 1194, 1582, 1737, 2358
DdeI CTNAG 7 cut(s) 314, 672, 842, 923, 1114, 2085, 2157
EaeI YGGCCR 2 cut(s) 812, 1411
Eam1104I CTCTTC 8 cut(s) 60, 668, 869, 1032, 1839, 2113, 2209, 2221
EarI CTCTTC 8 cut(s) 60, 668, 869, 1032, 1839, 2113, 2209, 2221
EciI GGCGGA 2 cut(s) 1506, 1636
Ecl136II GAGCTC 2 cut(s) 1591, 1992
Eco130I CCWWGG 4 cut(s) 197, 1405, 1650, 1869
Eco24I GRGCYC 3 cut(s) 646, 1593, 1994
Eco31I GGTCTC 3 cut(s) 866, 1358, 1849
Eco47I GGWCC 2 cut(s) 1361, 2285
Eco53kI GAGCTC 2 cut(s) 1591, 1992
Eco57I CTGAAG 4 cut(s) 622, 756, 1502, 1808
Eco81I CCTNAGG 1 cut(s) 1114
Eco88I CYCGRG 2 cut(s) 217, 2361
EcoICRI GAGCTC 2 cut(s) 1591, 1992
EcoNI CCTNNNNNAGG 1 cut(s) 671
EcoO109I RGGNCCY 1 cut(s) 221
EcoRI GAATTC 2 cut(s) 4, 1812
EcoRII CCWGG 2 cut(s) 774, 1858
EcoT14I CCWWGG 4 cut(s) 197, 1405, 1650, 1869
EcoT22I ATGCAT 1 cut(s) 337
EcoT38I GRGCYC 3 cut(s) 646, 1593, 1994
ErhI CCWWGG 4 cut(s) 197, 1405, 1650, 1869
Esp3I CGTCTC 1 cut(s) 1896
FalI AAGNNNNNCTT 2 cut(s) 2110, 2142
FaqI GGGAC 4 cut(s) 757, 1082, 1347, 2271
FauI CCCGC 2 cut(s) 488, 1278
FauNDI CATATG 1 cut(s) 273
FbaI TGATCA 2 cut(s) 357, 1209
FblI GTMKAC 2 cut(s) 1152, 1239
FokI GGATG 4 cut(s) 1096, 1636, 1932, 2006
FriOI GRGCYC 3 cut(s) 646, 1593, 1994
FspBI CTAG 8 cut(s) 53, 140, 185, 290, 1278, 1919, 2183, 2372
GlaI GCGC 2 cut(s) 1276, 1308
GsaI CCCAGC 1 cut(s) 1761
GsuI CTGGAG 1 cut(s) 2130
HaeII RGCGCY 1 cut(s) 1310
HaeIII GGCC 9 cut(s) 61, 144, 223, 452, 814, 1140, 1413, 1655, 2253
HapII CCGG 8 cut(s) 462, 1047, 1059, 1100, 1200, 1421, 1500, 2250
HgaI GACGC 2 cut(s) 472, 1854
HhaI GCGC 2 cut(s) 1277, 1309
Hin1I GRCGYC 1 cut(s) 1662
Hin6I GCGC 2 cut(s) 1275, 1307
HinP1I GCGC 2 cut(s) 1275, 1307
HincII GTYRAC 3 cut(s) 721, 1458, 2244
HindII GTYRAC 3 cut(s) 721, 1458, 2244
HindIII AAGCTT 1 cut(s) 2063
HinfI GANTC 9 cut(s) 79, 298, 633, 821, 963, 1017, 1514, 1726, 1783
HpaI GTTAAC 1 cut(s) 2244
HpaII CCGG 8 cut(s) 462, 1047, 1059, 1100, 1200, 1421, 1500, 2250
HphI GGTGA 7 cut(s) 148, 1048, 1198, 1552, 2137, 2215, 2306
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 5 cut(s) 731, 878, 1480, 1933, 2369
HpyCH4III ACNGT 9 cut(s) 931, 1039, 1066, 1234, 1361, 1525, 1615, 1710, 2403
HpyCH4IV ACGT 6 cut(s) 24, 1389, 1640, 1662, 1972, 2298
HpyCH4V TGCA 8 cut(s) 335, 530, 798, 848, 1205, 1297, 1472, 1931
HpyF3I CTNAG 7 cut(s) 314, 672, 842, 923, 1114, 2085, 2157
HpySE526I ACGT 6 cut(s) 24, 1389, 1640, 1662, 1972, 2298
Hsp92I GRCGYC 1 cut(s) 1662
HspAI GCGC 2 cut(s) 1275, 1307
KpnI GGTACC 1 cut(s) 46
Ksp22I TGATCA 2 cut(s) 357, 1209
KspAI GTTAAC 1 cut(s) 2244
LguI GCTCTTC 1 cut(s) 2221
LmnI GCTCC 3 cut(s) 1496, 1596, 1862
Lsp1109I GCAGC 8 cut(s) 1172, 1484, 1580, 1915, 2028, 2278, 2362, 2365
LweI GCATC 7 cut(s) 322, 539, 1118, 1614, 1735, 2028, 2149
MaeI CTAG 8 cut(s) 53, 140, 185, 290, 1278, 1919, 2183, 2372
MaeII ACGT 6 cut(s) 24, 1389, 1640, 1662, 1972, 2298
MflI RGATCY 2 cut(s) 1341, 1398
MhlI GDGCHC 4 cut(s) 646, 1299, 1593, 1994
MlsI TGGCCA 1 cut(s) 814
MluNI TGGCCA 1 cut(s) 814
MmeI TCCRAC 2 cut(s) 940, 1349
Mox20I TGGCCA 1 cut(s) 814
Mph1103I ATGCAT 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 2379
MscI TGGCCA 1 cut(s) 814
MseI TTAA 6 cut(s) 48, 711, 1961, 2175, 2243, 2339
MslI CAYNNNNRTG 4 cut(s) 353, 1146, 1643, 2333
Msp20I TGGCCA 1 cut(s) 814
MspA1I CMGCKG 1 cut(s) 1571
MspI CCGG 8 cut(s) 462, 1047, 1059, 1100, 1200, 1421, 1500, 2250
MspR9I CCNGG 4 cut(s) 776, 1100, 1422, 1860
Mva1269I GAATGC 3 cut(s) 212, 335, 848
MvaI CCWGG 2 cut(s) 776, 1860
MvnI CGCG 2 cut(s) 483, 1275
NciI CCSGG 2 cut(s) 1100, 1422
NcoI CCATGG 3 cut(s) 1405, 1650, 1869
NdeI CATATG 1 cut(s) 273
NlaIV GGNNCC 8 cut(s) 44, 222, 1290, 1363, 1426, 1498, 1763, 2287
NmuCI GTSAC 9 cut(s) 382, 676, 756, 1054, 1519, 1540, 1609, 1645, 2294
NsiI ATGCAT 1 cut(s) 337
OliI CACNNNNGTG 1 cut(s) 1643
PagI TCATGA 2 cut(s) 129, 2383
PaqCI CACCTGC 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 2221
PctI GAATGC 3 cut(s) 212, 335, 848
PdmI GAANNNNTTC 1 cut(s) 2379
PfeI GAWTC 9 cut(s) 79, 298, 633, 821, 963, 1017, 1514, 1726, 1783
PflMI CCANNNNNTGG 1 cut(s) 2282
PfoI TCCNGGA 1 cut(s) 1098
PinAI ACCGGT 2 cut(s) 461, 1199
PsiI TTATAA 1 cut(s) 1700
Psp124BI GAGCTC 2 cut(s) 1593, 1994
Psp1406I AACGTT 2 cut(s) 24, 1389
Psp6I CCWGG 2 cut(s) 774, 1858
PspFI CCCAGC 1 cut(s) 1757
PspGI CCWGG 2 cut(s) 774, 1858
PspN4I GGNNCC 8 cut(s) 44, 222, 1290, 1363, 1426, 1498, 1763, 2287
PspPI GGNCC 4 cut(s) 221, 1361, 1654, 2285
PstI CTGCAG 1 cut(s) 800
PsuI RGATCY 2 cut(s) 1341, 1398
PvuII CAGCTG 1 cut(s) 1571
RsaI GTAC 6 cut(s) 44, 830, 1195, 1583, 1738, 2359
RsaNI GTAC 6 cut(s) 43, 829, 1194, 1582, 1737, 2358
RseI CAYNNNNRTG 4 cut(s) 353, 1146, 1643, 2333
SacI GAGCTC 2 cut(s) 1593, 1994
SapI GCTCTTC 1 cut(s) 2221
SaqAI TTAA 6 cut(s) 48, 711, 1961, 2175, 2243, 2339
Sau96I GGNCC 4 cut(s) 221, 1361, 1654, 2285
ScrFI CCNGG 4 cut(s) 776, 1100, 1422, 1860
SduI GDGCHC 4 cut(s) 646, 1299, 1593, 1994
SfaNI GCATC 7 cut(s) 322, 539, 1118, 1614, 1735, 2028, 2149
SfcI CTRYAG 2 cut(s) 171, 796
SinI GGWCC 2 cut(s) 1361, 2285
SmiMI CAYNNNNRTG 4 cut(s) 353, 1146, 1643, 2333
SmlI CTYRAG 2 cut(s) 454, 749
SmoI CTYRAG 2 cut(s) 454, 749
SspI AATATT 2 cut(s) 193, 1887
SspMI CTAG 8 cut(s) 53, 140, 185, 290, 1278, 1919, 2183, 2372
SstI GAGCTC 2 cut(s) 1593, 1994
StyD4I CCNGG 4 cut(s) 774, 1098, 1420, 1858
StyI CCWWGG 4 cut(s) 197, 1405, 1650, 1869
TaaI ACNGT 9 cut(s) 931, 1039, 1066, 1234, 1361, 1525, 1615, 1710, 2403
TaiI ACGT 6 cut(s) 27, 1392, 1643, 1665, 1975, 2301
TaqI TCGA 5 cut(s) 205, 890, 1320, 1743, 1942
TaqII GACCGA 1 cut(s) 1923
TatI WGTACW 1 cut(s) 828
TauI GCSGC 2 cut(s) 539, 1621
TfiI GAWTC 9 cut(s) 79, 298, 633, 821, 963, 1017, 1514, 1726, 1783
Tru1I TTAA 6 cut(s) 48, 711, 1961, 2175, 2243, 2339
Tru9I TTAA 6 cut(s) 48, 711, 1961, 2175, 2243, 2339
TscAI CASTG 5 cut(s) 850, 1042, 1524, 1620, 2242
TseFI GTSAC 9 cut(s) 382, 676, 756, 1054, 1519, 1540, 1609, 1645, 2294
TseI GCWGC 8 cut(s) 1160, 1472, 1568, 1928, 2016, 2266, 2350, 2353
Tsp45I GTSAC 9 cut(s) 382, 676, 756, 1054, 1519, 1540, 1609, 1645, 2294
TspGWI ACGGA 6 cut(s) 566, 617, 1544, 1559, 1599, 1754
TspRI CASTG 5 cut(s) 850, 1042, 1524, 1620, 2242
Van91I CCANNNNNTGG 1 cut(s) 2282
VneI GTGCAC 1 cut(s) 1295
VpaK11BI GGWCC 2 cut(s) 1361, 2285
XagI CCTNNNNNAGG 1 cut(s) 671
XapI RAATTY 3 cut(s) 4, 254, 1812
XbaI TCTAGA 1 cut(s) 289
XmiI GTMKAC 2 cut(s) 1152, 1239
XmnI GAANNNNTTC 1 cut(s) 2379
XspI CTAG 8 cut(s) 53, 140, 185, 290, 1278, 1919, 2183, 2372
ZraI GACGTC 1 cut(s) 1663
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.