Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008563

Physical Location & Seq

Genomic Coordinates Forward (+)

19393768 .. 19396411

Gene Structure 2644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGTAAGAGTTGGTTTTCAGCTGTGAAGAAAGCATTAAGCCCAGAACCAAAACAAAAGAAAGAGCAGAAGCCACATAAGTCCAAGAAATGGTTTGGTAAATCCAAGAAGCTAGATGTTACTAATTCTGGTGCAGCATATTCTCCTCGTACTGTCAAAGACGCGAAACTAAAGGAGATTGAGGAGCAACAGAGCAGACATGCTTACTCTGTGGCTATTGCAACTGCTGCAGCTGCAGAGGCAGCCGTTGCAGCTGCTCAAGCTGCTGCTGAAGTTGTTCGTCTCTCTGCATTATCACGGTTCCCCGGGAAATCAATGGAAGAGATCGCCGCTATCAAGATTCAGACAGCATTTAGAGGATATATGGCAAGAAGAGCATTGCGTGCGTTGAGAGGTCTTGTGAGGCTAAAATCTTTAGTCCAGGGGAAATGTGTGAGACGTCAAGCCACATCTACATTGCAAAGCATGCAAACACTAGCTAGAGTACAATATCAGATTCGTGAGAGAAGGCTCCGATTGTCTGAGGATAAACAGGCTTTAACACGACAGCTCCAACAAAAACACAATAAAGACTTTGATAAGACTGGAGAAAATTGGAATGATAGTACATTGTCGCGGGAGAAAGTTGAAGCAAACATGTTGAACAAGCAAGTAGCAACAATGAGAAGAGAAAAAGCGCTTGCATATGCATTCAGTCACCAGAATACATGGAAAAACTCAACTAAAATGGGTTCTCAAACATTCATGGACCCTAACAATCCGCATTGGGGTTGGAGTTGGCTAGAACGTTGGATGGCTGCTCGACCAAACGAAAACCACTCACTCACACCAGATAATGCTGAAAAAGACTCTTCTGCTAGGAGTGTAGCAAGCCGTGCCATGTCTGAGATGATTCCACGAGGCAAAAACCTTTCACCAAGAGGAAAGACACCAAACAGTCGAAGAGGGTCAAGCCCGAGAGTGAGGCAAGTCCCAAGTGAAGACTCAAACAGCATTGTGAGTTTCCAATCAGAACAACCTTGCAATCGTAGGCATAGCACTTGTGGATCAATTCCATCAACTAGAGACGATGAAAGCTTCACCAGTAGTTTCTCTCAGTCAGTTCCAGGCTACATGGCACCTACACAAGCCGCCAAAGCAAGAGCTCGATTCTCAAACCTTAGTCCTCTAAGCTCAGAGAAGACAGCGAAAAAACGGCTTTCCTTCTCGGGATCTCCTAAGACTGTAAGACGGTTTTCAGGTCCACCAAAGCTGGAAAGCAATGTTACTAAGAAAGATACTAATCTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

430

Amino Acids

48.12

Weight (kDa)

10.59

Isoelectric Point (pI)

58.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52290 AT5G03040 AT5G03040 AT5G03040
fragaria_vesca	FvH4_6g15440 FvH4_6g15440
malus_domestica	MD04G1103600.v1.1 MD12G1123500.v1.1
prunus_persica	Prupe.6G239700_v2.0.a1
pyrus_communis	pycom04g09880 pycom12g12220
rosa_chinensis	RchiOBHm_Chr3g0468921
rosa_laevigata	RLG00000024400
rosa_multiflora	Rmu_co8378931.1_g000001 Rmu_sc0001639.1_g000010 Rmu_sc0003298.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412460
rosa_rugosa	Rorug03G0097600 Rorug03G0097600
rosa_samantha	Rh3AG147200 Rh3BG169800 Rh3DG205300
rosa_wichuraiana	Rw3G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	1117
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccII	CGCG	2 cut(s)	164, 616
AciI	CCGC	4 cut(s)	330, 616, 761, 1131
AclI	AACGTT	1 cut(s)	787
AclWI	GGATC	2 cut(s)	1054, 1219
AcuI	CTGAAG	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	439
AfaI	GTAC	3 cut(s)	151, 486, 607
AfeI	AGCGCT	1 cut(s)	678
AfiI	CCNNNNNNNGG	2 cut(s)	90, 767
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	2 cut(s)	629, 643
AjnI	CCWGG	2 cut(s)	420, 1105
Alw21I	GWGCWC	1 cut(s)	1147
Alw26I	GTCTC	3 cut(s)	287, 430, 1059
AlwI	GGATC	2 cut(s)	1054, 1219
Ama87I	CYCGRG	3 cut(s)	305, 955, 1207
Aor51HI	AGCGCT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	679
AspS9I	GGNCC	2 cut(s)	748, 1241
AsuC2I	CCSGG	2 cut(s)	306, 307
AsuHPI	GGTGA	3 cut(s)	689, 906, 1072
AvaI	CYCGRG	3 cut(s)	305, 955, 1207
AvaII	GGWCC	2 cut(s)	748, 1241
BanI	GGYRCC	1 cut(s)	1117
BanII	GRGCYC	1 cut(s)	1147
BauI	CACGAG	1 cut(s)	897
BbsI	GAAGAC	2 cut(s)	987, 1187
Bbv12I	GWGCWC	1 cut(s)	1147
BccI	CCATC	2 cut(s)	787, 1063
BceAI	ACGGC	3 cut(s)	230, 858, 1211
BciT130I	CCWGG	2 cut(s)	422, 1107
BcnI	CCSGG	2 cut(s)	306, 307
BcoDI	GTCTC	3 cut(s)	287, 430, 1059
BfaI	CTAG	6 cut(s)	113, 476, 480, 782, 858, 1062
BfmI	CTRYAG	2 cut(s)	228, 234
BfoI	RGCGCY	1 cut(s)	680
Bme1390I	CCNGG	4 cut(s)	306, 307, 422, 1107
Bme18I	GGWCC	2 cut(s)	748, 1241
BmeT110I	CYCGRG	3 cut(s)	305, 955, 1207
BmgT120I	GGNCC	2 cut(s)	748, 1241
BmiI	GGNNCC	4 cut(s)	302, 512, 750, 1119
BmrFI	CCNGG	4 cut(s)	306, 307, 422, 1107
BpiI	GAAGAC	2 cut(s)	987, 1187
BpmI	CTGGAG	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	2 cut(s)	306, 307
BsaBI	GATNNNNATC	1 cut(s)	1281
BsaHI	GRCGYC	1 cut(s)	439
BsaJI	CCNNGG	3 cut(s)	304, 305, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 767
Bse1I	ACTGG	2 cut(s)	589, 1083
Bse3DI	GCAATG	3 cut(s)	377, 455, 1267
Bse8I	GATNNNNATC	1 cut(s)	1281
BseBI	CCWGG	2 cut(s)	422, 1107
BseDI	CCNNGG	3 cut(s)	304, 305, 421
BseGI	GGATG	1 cut(s)	798
BseJI	GATNNNNATC	1 cut(s)	1281
BseLI	CCNNNNNNNGG	2 cut(s)	90, 767
BseMI	GCAATG	3 cut(s)	377, 455, 1267
BseMII	CTCAG	4 cut(s)	513, 876, 1109, 1188
BseNI	ACTGG	2 cut(s)	589, 1083
BseRI	GAGGAG	2 cut(s)	135, 197
BsgI	GTGCAG	1 cut(s)	153
Bsh1236I	CGCG	2 cut(s)	164, 616
BshNI	GGYRCC	1 cut(s)	1117
BsiHKAI	GWGCWC	1 cut(s)	1147
BsiHKCI	CYCGRG	3 cut(s)	305, 955, 1207
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	956
BslI	CCNNNNNNNGG	2 cut(s)	90, 767
BsmAI	GTCTC	3 cut(s)	287, 430, 1059
BsmBI	CGTCTC	3 cut(s)	287, 430, 1059
BsmFI	GGGAC	1 cut(s)	956
BsmI	GAATGC	1 cut(s)	689
BsoBI	CYCGRG	3 cut(s)	305, 955, 1207
Bsp1286I	GDGCHC	1 cut(s)	1147
Bsp143I	GATC	3 cut(s)	324, 1046, 1211
BspACI	CCGC	4 cut(s)	330, 616, 761, 1131
BspCNI	CTCAG	4 cut(s)	514, 877, 1108, 1187
BspFNI	CGCG	2 cut(s)	164, 616
BspLI	GGNNCC	4 cut(s)	302, 512, 750, 1119
BspMAI	CTGCAG	2 cut(s)	232, 238
BspPI	GGATC	2 cut(s)	1054, 1219
BspQI	GCTCTTC	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	1117
BsrDI	GCAATG	3 cut(s)	377, 455, 1267
BsrI	ACTGG	2 cut(s)	589, 1083
BssECI	CCNNGG	3 cut(s)	304, 305, 421
BssMI	GATC	3 cut(s)	324, 1046, 1211
BssNI	GRCGYC	1 cut(s)	439
BssSI	CACGAG	1 cut(s)	897
Bst2BI	CACGAG	1 cut(s)	897
Bst2UI	CCWGG	2 cut(s)	422, 1107
Bst4CI	ACNGT	5 cut(s)	154, 300, 938, 1225, 1233
Bst6I	CTCTTC	5 cut(s)	315, 367, 661, 856, 937
BstACI	GRCGYC	1 cut(s)	439
BstAPI	GCANNNNNTGC	5 cut(s)	227, 248, 383, 466, 875
BstC8I	GCNNGC	4 cut(s)	384, 467, 681, 871
BstDEI	CTNAG	8 cut(s)	522, 885, 1095, 1160, 1169, 1174, 1218, 1269
BstF5I	GGATG	1 cut(s)	798
BstFNI	CGCG	2 cut(s)	164, 616
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	3 cut(s)	327, 1049, 1214
BstMAI	GTCTC	3 cut(s)	287, 430, 1059
BstMBI	GATC	3 cut(s)	324, 1046, 1211
BstNI	CCWGG	2 cut(s)	422, 1107
BstNSI	RCATGY	3 cut(s)	203, 469, 640
BstSCI	CCNGG	4 cut(s)	304, 305, 420, 1105
BstSFI	CTRYAG	2 cut(s)	228, 234
BstUI	CGCG	2 cut(s)	164, 616
BstV2I	GAAGAC	2 cut(s)	987, 1187
BstX2I	RGATCY	1 cut(s)	1211
BstYI	RGATCY	1 cut(s)	1211
BtsCI	GGATG	1 cut(s)	798
Cac8I	GCNNGC	4 cut(s)	384, 467, 681, 871
CfoI	GCGC	1 cut(s)	679
Cfr13I	GGNCC	2 cut(s)	748, 1241
Cfr9I	CCCGGG	1 cut(s)	305
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	3 cut(s)	150, 485, 606
CviAII	CATG	7 cut(s)	200, 466, 637, 708, 745, 880, 1114
CviQI	GTAC	3 cut(s)	150, 485, 606
DdeI	CTNAG	8 cut(s)	522, 885, 1095, 1160, 1169, 1174, 1218, 1269
DpnI	GATC	3 cut(s)	326, 1048, 1213
DpnII	GATC	3 cut(s)	324, 1046, 1211
Eam1104I	CTCTTC	5 cut(s)	315, 367, 661, 856, 937
EarI	CTCTTC	5 cut(s)	315, 367, 661, 856, 937
Ecl136II	GAGCTC	1 cut(s)	1145
Eco24I	GRGCYC	1 cut(s)	1147
Eco47I	GGWCC	2 cut(s)	748, 1241
Eco47III	AGCGCT	1 cut(s)	678
Eco53kI	GAGCTC	1 cut(s)	1145
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	3 cut(s)	305, 955, 1207
EcoICRI	GAGCTC	1 cut(s)	1145
EcoRII	CCWGG	2 cut(s)	420, 1105
EcoT22I	ATGCAT	1 cut(s)	691
EcoT38I	GRGCYC	1 cut(s)	1147
Esp3I	CGTCTC	3 cut(s)	287, 430, 1059
FaeI	CATG	7 cut(s)	203, 469, 640, 711, 748, 883, 1117
FaqI	GGGAC	1 cut(s)	956
FatI	CATG	7 cut(s)	199, 465, 636, 707, 744, 879, 1113
FauI	CCCGC	1 cut(s)	609
FauNDI	CATATG	1 cut(s)	685
FokI	GGATG	1 cut(s)	805
FriOI	GRGCYC	1 cut(s)	1147
FspBI	CTAG	6 cut(s)	113, 476, 480, 782, 858, 1062
GlaI	GCGC	1 cut(s)	678
GsuI	CTGGAG	1 cut(s)	606
HaeII	RGCGCY	1 cut(s)	680
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	679
Hin1I	GRCGYC	1 cut(s)	439
Hin1II	CATG	7 cut(s)	203, 469, 640, 711, 748, 883, 1117
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HindIII	AAGCTT	1 cut(s)	1075
HinfI	GANTC	6 cut(s)	340, 496, 848, 892, 983, 1149
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	3 cut(s)	689, 906, 1072
Hpy166II	GTNNAC	1 cut(s)	1244
Hpy188I	TCNGA	7 cut(s)	345, 495, 515, 523, 886, 1012, 1177
Hpy188III	TCNNGA	3 cut(s)	337, 500, 1209
Hpy8I	GTNNAC	1 cut(s)	1244
HpyAV	CCTTC	2 cut(s)	501, 1213
HpyCH4III	ACNGT	5 cut(s)	154, 300, 938, 1225, 1233
HpyCH4IV	ACGT	2 cut(s)	439, 787
HpyF3I	CTNAG	8 cut(s)	522, 885, 1095, 1160, 1169, 1174, 1218, 1269
HpySE526I	ACGT	2 cut(s)	439, 787
Hsp92I	GRCGYC	1 cut(s)	439
Hsp92II	CATG	7 cut(s)	203, 469, 640, 711, 748, 883, 1117
HspAI	GCGC	1 cut(s)	677
Kzo9I	GATC	3 cut(s)	324, 1046, 1211
LguI	GCTCTTC	1 cut(s)	367
LmnI	GCTCC	3 cut(s)	184, 516, 555
MaeI	CTAG	6 cut(s)	113, 476, 480, 782, 858, 1062
MaeII	ACGT	2 cut(s)	439, 787
MaeIII	GTNAC	3 cut(s)	118, 695, 1264
MalI	GATC	3 cut(s)	326, 1048, 1213
MboI	GATC	3 cut(s)	324, 1046, 1211
MboII	GAAGA	8 cut(s)	40, 332, 384, 678, 843, 954, 992, 1192
MflI	RGATCY	1 cut(s)	1211
MhlI	GDGCHC	1 cut(s)	1147
MluCI	AATT	3 cut(s)	124, 592, 1050
MlyI	GAGTC	2 cut(s)	842, 977
MmeI	TCCRAC	3 cut(s)	577, 752, 770
Mph1103I	ATGCAT	1 cut(s)	691
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	3 cut(s)	38, 539, 1291
MspA1I	CMGCKG	3 cut(s)	23, 233, 254
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	4 cut(s)	306, 307, 422, 1107
Mva1269I	GAATGC	1 cut(s)	689
MvaI	CCWGG	2 cut(s)	422, 1107
MvnI	CGCG	2 cut(s)	164, 616
NciI	CCSGG	2 cut(s)	306, 307
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	3 cut(s)	324, 1046, 1211
NlaIII	CATG	7 cut(s)	203, 469, 640, 711, 748, 883, 1117
NlaIV	GGNNCC	4 cut(s)	302, 512, 750, 1119
NmuCI	GTSAC	1 cut(s)	695
NsiI	ATGCAT	1 cut(s)	691
NspI	RCATGY	3 cut(s)	203, 469, 640
PaeI	GCATGC	1 cut(s)	469
PciI	ACATGT	1 cut(s)	636
PciSI	GCTCTTC	1 cut(s)	367
PctI	GAATGC	1 cut(s)	689
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	4 cut(s)	340, 496, 892, 1149
PflMI	CCANNNNNTGG	1 cut(s)	90
PleI	GAGTC	2 cut(s)	842, 977
PpsI	GAGTC	2 cut(s)	842, 977
PscI	ACATGT	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	1147
Psp1406I	AACGTT	1 cut(s)	787
Psp6I	CCWGG	2 cut(s)	420, 1105
PspGI	CCWGG	2 cut(s)	420, 1105
PspN4I	GGNNCC	4 cut(s)	302, 512, 750, 1119
PspPI	GGNCC	2 cut(s)	748, 1241
PstI	CTGCAG	2 cut(s)	232, 238
PsuI	RGATCY	1 cut(s)	1211
PvuII	CAGCTG	3 cut(s)	23, 233, 254
RsaI	GTAC	3 cut(s)	151, 486, 607
RsaNI	GTAC	3 cut(s)	150, 485, 606
SacI	GAGCTC	1 cut(s)	1147
SapI	GCTCTTC	1 cut(s)	367
SaqAI	TTAA	3 cut(s)	38, 539, 1291
Sau3AI	GATC	3 cut(s)	324, 1046, 1211
Sau96I	GGNCC	2 cut(s)	748, 1241
SchI	GAGTC	2 cut(s)	842, 977
ScrFI	CCNGG	4 cut(s)	306, 307, 422, 1107
SduI	GDGCHC	1 cut(s)	1147
SfcI	CTRYAG	2 cut(s)	228, 234
SinI	GGWCC	2 cut(s)	748, 1241
SmaI	CCCGGG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	3 cut(s)	124, 592, 1050
SsiI	CCGC	4 cut(s)	330, 616, 761, 1131
SspMI	CTAG	6 cut(s)	113, 476, 480, 782, 858, 1062
SstI	GAGCTC	1 cut(s)	1147
StyD4I	CCNGG	4 cut(s)	304, 305, 420, 1105
TaaI	ACNGT	5 cut(s)	154, 300, 938, 1225, 1233
TaiI	ACGT	2 cut(s)	442, 790
TaqI	TCGA	3 cut(s)	802, 940, 1147
TasI	AATT	3 cut(s)	124, 592, 1050
TatI	WGTACW	2 cut(s)	484, 605
TauI	GCSGC	2 cut(s)	332, 1133
TfiI	GAWTC	4 cut(s)	340, 496, 892, 1149
Tru1I	TTAA	3 cut(s)	38, 539, 1291
Tru9I	TTAA	3 cut(s)	38, 539, 1291
TseFI	GTSAC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	2 cut(s)	733, 1086
TspMI	CCCGGG	1 cut(s)	305
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	748, 1241
XceI	RCATGY	3 cut(s)	203, 469, 640
XmaI	CCCGGG	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	6 cut(s)	113, 476, 480, 782, 858, 1062
ZraI	GACGTC	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.