Rmu_sc0003298.1_g000001

IQ-DOMAIN 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003298.1
Physical Location & Seq
Forward (+)
3539 .. 6915
3377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003298.1_g000001.1.cds

Sequence Viewer

Length: 1476 bp
ctgttcaaaggagtgcatcaggggaatgataaggagatggggaggaaaggaaattggttttcttcagtaaagaaagctctcagccctgattccaaagagaagaaagaacagagatcagataagtctaaaaagaaatggtttgggaagcataaacagccagaatatgagtctacctctttagcaccaccgcccacatcgccacctcttcctccacaagaagaggtgaaattaaccaatgtggtgaatgagcagcaaaattatgcttaccctgttgcaatcaccgctactgcaacagttgagccagaggttcctgcacctcctctggttcaagctgcccctgaggtagtcagattgcccacagttaatcgatatgctggaaaatcaagggaggaagcggcagcaatcaagattcaaacagcatttcgaggatacctggcaagaagggcactgagggctttaagagggctggttaggctgaaaacattgatagagggatctgttgtgaaacggcaagccacaaataccctcaaatgcatgcagactctatctcgtgtgcaagctcaaatacgttccaggaggatcagaatgttagaggagaaccaggctctccaaaggcaactcctacttaaacatgcaaaagagactttgcagcttggggatgaatgggatgatagcttacagtcaaaggagcaagttgaagcaaacctattaagcaagcatgaagcagcaatcagaagggaaagagcccttgcttatgccttctctcatcagaaaaacgggaagaattctgcaaaatctgtaaacccaatgttcatggatccaagcaatccaacctggggttggagctggttggaacggtggatggctgcccggccatgggagagtcgtggcatgacagataaagacatccacgacgatcgctcatctgttaagagtgtaattactcgcagcatttcccccggagaaatcaataagtcatatgctcgatacctcctcaattccgataagcaatcccctacagccagtgaaaagccaagtcaacctggattccacttaccgtcaactccttcaaggccagcttctacaaaagtagctcgaaaattgaagccgtcaccaagcccaaggggtaacattcgtaccccagatgatgacacaaagagtgtggccagcatgcagtcagttcagtttaggaggcacagcattgctggctcatcagtaagggatgacgagagcatggacagttctccatcacttccaagttacatggtaccaactaaatctgcgagagctaagtccaggttgcagagtccggcagaaaagaatgggataactgagaaggataccgagtctgttaagaaacggctctccttccctgcctcgccagccagaccaaggcggcattctggtccgccaaaggtggatacaactttaatcactacagaaagaaaagtgagcagtgttgaagttggaagttga

Protein Analysis

491

Amino Acids

54.89

Weight (kDa)

10.13

Isoelectric Point (pI)

64.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1267
AccB1I GGYRCC 1 cut(s) 1267
AccI GTMKAC 1 cut(s) 170
AciI CCGC 5 cut(s) 188, 282, 395, 1396, 1409
AclWI GGATC 4 cut(s) 502, 587, 812, 825
AcoI YGGCCR 2 cut(s) 872, 1164
AcsI RAATTY 1 cut(s) 784
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 2 cut(s) 1138, 1269
AfiI CCNNNNNNNGG 5 cut(s) 836, 840, 876, 877, 1392
AgsI TTSAA 7 cut(s) 7, 329, 413, 698, 1071, 1105, 1463
AjnI CCWGG 6 cut(s) 432, 572, 600, 833, 1042, 1295
AjuI GAANNNNNNNTTGG 2 cut(s) 1384, 1416
AluBI AGCT 9 cut(s) 77, 332, 560, 652, 675, 846, 1079, 1094, 1289
AluI AGCT 9 cut(s) 77, 332, 560, 652, 675, 846, 1079, 1094, 1289
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 4 cut(s) 502, 587, 812, 825
AoxI GGCC 3 cut(s) 872, 1073, 1164
ApeKI GCWGC 7 cut(s) 250, 332, 398, 649, 725, 866, 948
ApoI RAATTY 1 cut(s) 784
Asp718I GGTACC 1 cut(s) 1267
AspS9I GGNCC 1 cut(s) 1406
AsuC2I CCSGG 2 cut(s) 871, 960
AsuHPI GGTGA 4 cut(s) 235, 253, 271, 1104
AvaII GGWCC 1 cut(s) 1406
AxyI CCTNAGG 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 448
BaeI ACNNNNGTAYC 2 cut(s) 1120, 1153
BalI TGGCCA 1 cut(s) 1166
BamHI GGATCC 1 cut(s) 817
BanI GGYRCC 1 cut(s) 1267
BanII GRGCYC 1 cut(s) 748
BauI CACGAG 1 cut(s) 549
BbvI GCAGC 7 cut(s) 262, 319, 410, 661, 737, 853, 960
BccI CCATC 3 cut(s) 31, 856, 1255
BceAI ACGGC 3 cut(s) 524, 1093, 1376
BciT130I CCWGG 6 cut(s) 434, 574, 602, 835, 1044, 1297
BciVI GTATCC 3 cut(s) 422, 1333, 1414
BcnI CCSGG 2 cut(s) 871, 960
BcoDI GTCTC 1 cut(s) 635
BfmI CTRYAG 2 cut(s) 1017, 1437
BfuI GTATCC 3 cut(s) 422, 1333, 1414
BisI GCNGC 9 cut(s) 251, 333, 396, 399, 650, 726, 867, 949, 1397
BlsI GCNGC 9 cut(s) 252, 334, 397, 400, 651, 727, 868, 950, 1398
Bme1390I CCNGG 8 cut(s) 434, 574, 602, 835, 871, 960, 1044, 1297
Bme18I GGWCC 1 cut(s) 1406
BmgT120I GGNCC 1 cut(s) 1406
BmiI GGNNCC 3 cut(s) 309, 819, 1269
BmrFI CCNGG 8 cut(s) 434, 574, 602, 835, 871, 960, 1044, 1297
BmsI GCATC 1 cut(s) 25
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuMI CCSGG 2 cut(s) 871, 960
Bsa29I ATCGAT 1 cut(s) 367
BsaJI CCNNGG 5 cut(s) 834, 875, 958, 1121, 1391
Bsc4I CCNNNNNNNGG 5 cut(s) 836, 840, 876, 877, 1392
Bse1I ACTGG 1 cut(s) 1023
Bse21I CCTNAGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 1200
BseBI CCWGG 6 cut(s) 434, 574, 602, 835, 1044, 1297
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 5 cut(s) 834, 875, 958, 1121, 1391
BseGI GGATG 5 cut(s) 664, 673, 867, 906, 1228
BseLI CCNNNNNNNGG 5 cut(s) 836, 840, 876, 877, 1392
BseMI GCAATG 1 cut(s) 1200
BseMII CTCAG 4 cut(s) 94, 330, 440, 1323
BseNI ACTGG 1 cut(s) 1023
BseRI GAGGAG 3 cut(s) 309, 608, 983
BseSI GKGCMC 1 cut(s) 448
BseXI GCAGC 7 cut(s) 262, 319, 410, 661, 737, 853, 960
BsgI GTGCAG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 919
BshFI GGCC 3 cut(s) 874, 1075, 1166
BshNI GGYRCC 1 cut(s) 1267
BshVI ATCGAT 1 cut(s) 367
BsiEI CGRYCG 1 cut(s) 919
BsiSI CCGG 3 cut(s) 871, 960, 1310
BslI CCNNNNNNNGG 5 cut(s) 836, 840, 876, 877, 1392
BsmAI GTCTC 1 cut(s) 635
BsmI GAATGC 1 cut(s) 1399
BsnI GGCC 3 cut(s) 874, 1075, 1166
Bsp1286I GDGCHC 2 cut(s) 448, 748
Bsp143I GATC 5 cut(s) 113, 494, 579, 817, 916
Bsp19I CCATGG 1 cut(s) 875
BspACI CCGC 5 cut(s) 188, 282, 395, 1396, 1409
BspANI GGCC 3 cut(s) 874, 1075, 1166
BspCNI CTCAG 4 cut(s) 93, 331, 441, 1324
BspDI ATCGAT 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 309, 819, 1269
BspPI GGATC 4 cut(s) 502, 587, 812, 825
BspT107I GGYRCC 1 cut(s) 1267
BsrDI GCAATG 1 cut(s) 1200
BsrI ACTGG 1 cut(s) 1023
BssECI CCNNGG 5 cut(s) 834, 875, 958, 1121, 1391
BssMI GATC 5 cut(s) 113, 494, 579, 817, 916
BssSI CACGAG 1 cut(s) 549
BssT1I CCWWGG 3 cut(s) 875, 1121, 1391
Bst2BI CACGAG 1 cut(s) 549
Bst2UI CCWGG 6 cut(s) 434, 574, 602, 835, 1044, 1297
Bst4CI ACNGT 6 cut(s) 295, 361, 681, 858, 1059, 1241
Bst6I CTCTTC 2 cut(s) 210, 213
BstC8I GCNNGC 9 cut(s) 513, 536, 558, 716, 1077, 1168, 1172, 1207, 1383
BstDEI CTNAG 5 cut(s) 80, 339, 449, 1290, 1332
BstDSI CCRYGG 1 cut(s) 875
BstF5I GGATG 5 cut(s) 664, 673, 867, 906, 1228
BstKTI GATC 5 cut(s) 116, 497, 582, 820, 919
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 5 cut(s) 113, 494, 579, 817, 916
BstMCI CGRYCG 1 cut(s) 919
BstMWI GCNNNNNNNGC 8 cut(s) 154, 196, 281, 443, 452, 472, 1206, 1382
BstNI CCWGG 6 cut(s) 434, 574, 602, 835, 1044, 1297
BstNSI RCATGY 3 cut(s) 538, 635, 1174
BstSCI CCNGG 8 cut(s) 432, 572, 600, 833, 869, 958, 1042, 1295
BstSFI CTRYAG 2 cut(s) 1017, 1437
BstSLI GKGCMC 1 cut(s) 448
BstV1I GCAGC 7 cut(s) 262, 319, 410, 661, 737, 853, 960
BstX2I RGATCY 2 cut(s) 494, 817
BstYI RGATCY 2 cut(s) 494, 817
Bsu15I ATCGAT 1 cut(s) 367
Bsu36I CCTNAGG 1 cut(s) 339
BsuI GTATCC 3 cut(s) 422, 1333, 1414
BsuRI GGCC 3 cut(s) 874, 1075, 1166
BsuTUI ATCGAT 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 875
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 5 cut(s) 664, 673, 867, 906, 1228
BtsI GCAGTG 1 cut(s) 1462
BtsIMutI CAGTG 3 cut(s) 446, 1030, 1462
Cac8I GCNNGC 9 cut(s) 513, 536, 558, 716, 1077, 1168, 1172, 1207, 1383
Cfr13I GGNCC 1 cut(s) 1406
ClaI ATCGAT 1 cut(s) 367
Csp6I GTAC 2 cut(s) 1137, 1268
CspCI CAANNNNNGTGG 2 cut(s) 1143, 1178
CviAII CATG 9 cut(s) 535, 632, 719, 814, 876, 892, 1171, 1234, 1264
CviQI GTAC 2 cut(s) 1137, 1268
DdeI CTNAG 5 cut(s) 80, 339, 449, 1290, 1332
DpnI GATC 5 cut(s) 115, 496, 581, 819, 918
DpnII GATC 5 cut(s) 113, 494, 579, 817, 916
EaeI YGGCCR 2 cut(s) 872, 1164
Eam1104I CTCTTC 2 cut(s) 210, 213
EarI CTCTTC 2 cut(s) 210, 213
EciI GGCGGA 1 cut(s) 1398
Eco130I CCWWGG 3 cut(s) 875, 1121, 1391
Eco24I GRGCYC 1 cut(s) 748
Eco47I GGWCC 1 cut(s) 1406
Eco57I CTGAAG 1 cut(s) 48
Eco81I CCTNAGG 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 784
EcoRII CCWGG 6 cut(s) 432, 572, 600, 833, 1042, 1295
EcoT14I CCWWGG 3 cut(s) 875, 1121, 1391
EcoT22I ATGCAT 1 cut(s) 536
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 3 cut(s) 875, 1121, 1391
FaeI CATG 9 cut(s) 538, 635, 722, 817, 879, 895, 1174, 1237, 1267
FalI AAGNNNNNCTT 2 cut(s) 1063, 1095
FatI CATG 9 cut(s) 534, 631, 718, 813, 875, 891, 1170, 1233, 1263
FauNDI CATATG 1 cut(s) 979
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 9 cut(s) 251, 333, 396, 399, 650, 726, 867, 949, 1397
FokI GGATG 5 cut(s) 671, 680, 874, 893, 1235
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 9 cut(s) 251, 333, 396, 399, 650, 726, 867, 949, 1397
GluI GCNGC 9 cut(s) 251, 333, 396, 399, 650, 726, 867, 949, 1397
HaeIII GGCC 3 cut(s) 874, 1075, 1166
HapII CCGG 3 cut(s) 871, 960, 1310
Hin1II CATG 9 cut(s) 538, 635, 722, 817, 879, 895, 1174, 1237, 1267
HincII GTYRAC 2 cut(s) 1040, 1062
HindII GTYRAC 2 cut(s) 1040, 1062
HinfI GANTC 8 cut(s) 89, 167, 409, 541, 883, 1047, 1306, 1346
HpaII CCGG 3 cut(s) 871, 960, 1310
HphI GGTGA 4 cut(s) 235, 253, 271, 1104
Hpy166II GTNNAC 4 cut(s) 171, 802, 1040, 1062
Hpy188I TCNGA 6 cut(s) 118, 350, 584, 734, 771, 1003
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 4 cut(s) 171, 802, 1040, 1062
Hpy99I CGWCG 1 cut(s) 917
HpyAV CCTTC 6 cut(s) 435, 729, 769, 1077, 1330, 1378
HpyCH4III ACNGT 6 cut(s) 295, 361, 681, 858, 1059, 1241
HpyCH4IV ACGT 1 cut(s) 568
HpyF10VI GCNNNNNNNGC 8 cut(s) 154, 196, 281, 443, 452, 472, 1206, 1382
HpyF3I CTNAG 5 cut(s) 80, 339, 449, 1290, 1332
HpySE526I ACGT 1 cut(s) 568
Hsp92II CATG 9 cut(s) 538, 635, 722, 817, 879, 895, 1174, 1237, 1267
KpnI GGTACC 1 cut(s) 1271
Kzo9I GATC 5 cut(s) 113, 494, 579, 817, 916
LmnI GCTCC 2 cut(s) 688, 843
Lsp1109I GCAGC 7 cut(s) 262, 319, 410, 661, 737, 853, 960
LweI GCATC 1 cut(s) 25
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 3 cut(s) 1110, 1127, 1259
MalI GATC 5 cut(s) 115, 496, 581, 819, 918
MboI GATC 5 cut(s) 113, 494, 579, 817, 916
MboII GAAGA 5 cut(s) 54, 112, 197, 230, 793
MflI RGATCY 2 cut(s) 494, 817
MhlI GDGCHC 2 cut(s) 448, 748
MlsI TGGCCA 1 cut(s) 1166
MluCI AATT 7 cut(s) 52, 227, 256, 784, 939, 997, 1100
MluNI TGGCCA 1 cut(s) 1166
MlyI GAGTC 5 cut(s) 176, 535, 892, 1315, 1355
MmeI TCCRAC 4 cut(s) 821, 831, 854, 1447
Mox20I TGGCCA 1 cut(s) 1166
Mph1103I ATGCAT 1 cut(s) 536
MscI TGGCCA 1 cut(s) 1166
MseI TTAA 8 cut(s) 230, 363, 458, 627, 710, 930, 1353, 1430
Msp20I TGGCCA 1 cut(s) 1166
MspI CCGG 3 cut(s) 871, 960, 1310
MspR9I CCNGG 8 cut(s) 434, 574, 602, 835, 871, 960, 1044, 1297
Mva1269I GAATGC 1 cut(s) 1399
MvaI CCWGG 6 cut(s) 434, 574, 602, 835, 1044, 1297
MwoI GCNNNNNNNGC 8 cut(s) 154, 196, 281, 443, 452, 472, 1206, 1382
NciI CCSGG 2 cut(s) 871, 960
NcoI CCATGG 1 cut(s) 875
NdeI CATATG 1 cut(s) 979
NdeII GATC 5 cut(s) 113, 494, 579, 817, 916
NlaIII CATG 9 cut(s) 538, 635, 722, 817, 879, 895, 1174, 1237, 1267
NlaIV GGNNCC 3 cut(s) 309, 819, 1269
NmuCI GTSAC 1 cut(s) 1110
NsiI ATGCAT 1 cut(s) 536
NspI RCATGY 3 cut(s) 538, 635, 1174
PaeI GCATGC 2 cut(s) 538, 1174
PctI GAATGC 1 cut(s) 1399
PfeI GAWTC 3 cut(s) 89, 409, 1047
PfoI TCCNGGA 1 cut(s) 572
PkrI GCNGC 9 cut(s) 252, 334, 397, 400, 651, 727, 868, 950, 1398
Ple19I CGATCG 1 cut(s) 919
PleI GAGTC 5 cut(s) 175, 535, 891, 1314, 1354
PpsI GAGTC 5 cut(s) 175, 535, 891, 1314, 1354
Psp6I CCWGG 6 cut(s) 432, 572, 600, 833, 1042, 1295
PspGI CCWGG 6 cut(s) 432, 572, 600, 833, 1042, 1295
PspN4I GGNNCC 3 cut(s) 309, 819, 1269
PspPI GGNCC 1 cut(s) 1406
PsuI RGATCY 2 cut(s) 494, 817
PvuI CGATCG 1 cut(s) 919
RsaI GTAC 2 cut(s) 1138, 1269
RsaNI GTAC 2 cut(s) 1137, 1268
SaqAI TTAA 8 cut(s) 230, 363, 458, 627, 710, 930, 1353, 1430
SatI GCNGC 9 cut(s) 251, 333, 396, 399, 650, 726, 867, 949, 1397
Sau3AI GATC 5 cut(s) 113, 494, 579, 817, 916
Sau96I GGNCC 1 cut(s) 1406
SchI GAGTC 5 cut(s) 176, 535, 892, 1315, 1355
ScrFI CCNGG 8 cut(s) 434, 574, 602, 835, 871, 960, 1044, 1297
SduI GDGCHC 2 cut(s) 448, 748
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 2 cut(s) 1017, 1437
SinI GGWCC 1 cut(s) 1406
SphI GCATGC 2 cut(s) 538, 1174
Sse9I AATT 7 cut(s) 52, 227, 256, 784, 939, 997, 1100
SsiI CCGC 5 cut(s) 188, 282, 395, 1396, 1409
StyD4I CCNGG 8 cut(s) 432, 572, 600, 833, 869, 958, 1042, 1295
StyI CCWWGG 3 cut(s) 875, 1121, 1391
TaaI ACNGT 6 cut(s) 295, 361, 681, 858, 1059, 1241
TaiI ACGT 1 cut(s) 571
TaqI TCGA 4 cut(s) 367, 424, 985, 1096
TasI AATT 7 cut(s) 52, 227, 256, 784, 939, 997, 1100
TauI GCSGC 2 cut(s) 398, 1399
TfiI GAWTC 3 cut(s) 89, 409, 1047
Tru1I TTAA 8 cut(s) 230, 363, 458, 627, 710, 930, 1353, 1430
Tru9I TTAA 8 cut(s) 230, 363, 458, 627, 710, 930, 1353, 1430
TscAI CASTG 3 cut(s) 453, 1030, 1462
TseFI GTSAC 1 cut(s) 1110
TseI GCWGC 7 cut(s) 250, 332, 398, 649, 725, 866, 948
Tsp45I GTSAC 1 cut(s) 1110
TspDTI ATGAA 3 cut(s) 675, 735, 802
TspRI CASTG 3 cut(s) 453, 1030, 1462
VpaK11BI GGWCC 1 cut(s) 1406
XapI RAATTY 1 cut(s) 784
XceI RCATGY 3 cut(s) 538, 635, 1174
XcmI CCANNNNNNNNNTGG 1 cut(s) 837
XmiI GTMKAC 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.