IQ-DOMAIN 1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52290 AT5G03040 AT5G03040 AT5G03040 |
| fragaria_vesca | FvH4_6g15440 FvH4_6g15440 |
| malus_domestica | MD04G1103600.v1.1 MD12G1123500.v1.1 |
| prunus_persica | Prupe.6G239700_v2.0.a1 |
| pyrus_communis | pycom04g09880 pycom12g12220 |
| rosa_chinensis | RchiOBHm_Chr3g0468921 |
| rosa_laevigata | RLG00000024400 |
| rosa_multiflora | Rmu_co8378931.1_g000001 Rmu_sc0001639.1_g000010 Rmu_sc0003298.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00412460 |
| rosa_rugosa | Rorug03G0097600 Rorug03G0097600 |
| rosa_samantha | Rh3AG147200 Rh3BG169800 Rh3DG205300 |
| rosa_wichuraiana | Rw3G013850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1091 |
| AccBSI | CCGCTC | 1 cut(s) | 885 |
| AccI | GTMKAC | 1 cut(s) | 134 |
| AccII | CGCG | 1 cut(s) | 248 |
| AciI | CCGC | 5 cut(s) | 152, 246, 883, 1360, 1373 |
| AclWI | GGATC | 5 cut(s) | 466, 551, 776, 789, 1298 |
| AcoI | YGGCCR | 2 cut(s) | 836, 1347 |
| AcsI | RAATTY | 2 cut(s) | 748, 961 |
| AcuI | CTGAAG | 2 cut(s) | 12, 1161 |
| AfaI | GTAC | 1 cut(s) | 1102 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 800, 804, 840, 841, 1091, 1260, 1356 |
| AgsI | TTSAA | 6 cut(s) | 377, 662, 1026, 1035, 1069, 1427 |
| AjnI | CCWGG | 7 cut(s) | 396, 564, 797, 922, 1006, 1039, 1259 |
| AluBI | AGCT | 8 cut(s) | 41, 290, 296, 524, 616, 639, 810, 1058 |
| AluI | AGCT | 8 cut(s) | 41, 290, 296, 524, 616, 639, 810, 1058 |
| Alw21I | GWGCWC | 1 cut(s) | 712 |
| Alw26I | GTCTC | 1 cut(s) | 599 |
| AlwI | GGATC | 5 cut(s) | 466, 551, 776, 789, 1298 |
| AoxI | GGCC | 2 cut(s) | 836, 1347 |
| ApeKI | GCWGC | 8 cut(s) | 214, 296, 362, 613, 689, 830, 912, 1169 |
| ApoI | RAATTY | 2 cut(s) | 748, 961 |
| AspS9I | GGNCC | 2 cut(s) | 880, 1370 |
| AsuC2I | CCSGG | 1 cut(s) | 835 |
| AsuHPI | GGTGA | 6 cut(s) | 217, 235, 445, 1011, 1068, 1335 |
| AvaII | GGWCC | 2 cut(s) | 880, 1370 |
| BamHI | GGATCC | 1 cut(s) | 781 |
| BauI | CACGAG | 2 cut(s) | 513, 875 |
| BbsI | GAAGAC | 1 cut(s) | 1119 |
| Bbv12I | GWGCWC | 1 cut(s) | 712 |
| BbvI | GCAGC | 8 cut(s) | 226, 283, 374, 625, 701, 817, 924, 1156 |
| BccI | CCATC | 3 cut(s) | 820, 1081, 1219 |
| BceAI | ACGGC | 1 cut(s) | 488 |
| BciT130I | CCWGG | 7 cut(s) | 398, 566, 799, 924, 1008, 1041, 1261 |
| BciVI | GTATCC | 2 cut(s) | 386, 1378 |
| BcnI | CCSGG | 1 cut(s) | 835 |
| BcoDI | GTCTC | 1 cut(s) | 599 |
| BfaI | CTAG | 1 cut(s) | 537 |
| BfmI | CTRYAG | 2 cut(s) | 981, 1401 |
| BfuI | GTATCC | 2 cut(s) | 386, 1378 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1346 |
| BisI | GCNGC | 9 cut(s) | 215, 297, 363, 614, 690, 831, 913, 1170, 1361 |
| BlsI | GCNGC | 9 cut(s) | 216, 298, 364, 615, 691, 832, 914, 1171, 1362 |
| Bme1390I | CCNGG | 8 cut(s) | 398, 566, 799, 835, 924, 1008, 1041, 1261 |
| Bme18I | GGWCC | 2 cut(s) | 880, 1370 |
| BmgT120I | GGNCC | 2 cut(s) | 880, 1370 |
| BmiI | GGNNCC | 2 cut(s) | 273, 783 |
| BmrFI | CCNGG | 8 cut(s) | 398, 566, 799, 835, 924, 1008, 1041, 1261 |
| BpiI | GAAGAC | 1 cut(s) | 1119 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 122, 154, 869, 901 |
| BpmI | CTGGAG | 2 cut(s) | 270, 945 |
| BpuEI | CTTGAG | 1 cut(s) | 276 |
| BpuMI | CCSGG | 1 cut(s) | 835 |
| BsaJI | CCNNGG | 7 cut(s) | 388, 798, 839, 922, 1006, 1085, 1355 |
| BsaWI | WCCGGW | 1 cut(s) | 1014 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 268, 298 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 800, 804, 840, 841, 1091, 1260, 1356 |
| Bse118I | RCCGGY | 1 cut(s) | 1345 |
| Bse1I | ACTGG | 2 cut(s) | 987, 1131 |
| Bse3DI | GCAATG | 3 cut(s) | 158, 699, 1164 |
| BseBI | CCWGG | 7 cut(s) | 398, 566, 799, 924, 1008, 1041, 1261 |
| BseDI | CCNNGG | 7 cut(s) | 388, 798, 839, 922, 1006, 1085, 1355 |
| BseGI | GGATG | 4 cut(s) | 628, 637, 831, 1192 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 800, 804, 840, 841, 1091, 1260, 1356 |
| BseMI | GCAATG | 3 cut(s) | 158, 699, 1164 |
| BseMII | CTCAG | 1 cut(s) | 58 |
| BseNI | ACTGG | 2 cut(s) | 987, 1131 |
| BseRI | GAGGAG | 2 cut(s) | 273, 572 |
| BseXI | GCAGC | 8 cut(s) | 226, 283, 374, 625, 701, 817, 924, 1156 |
| BseYI | CCCAGC | 1 cut(s) | 1336 |
| BsgI | GTGCAG | 1 cut(s) | 1157 |
| Bsh1236I | CGCG | 1 cut(s) | 248 |
| BshFI | GGCC | 2 cut(s) | 838, 1349 |
| BsiHKAI | GWGCWC | 1 cut(s) | 712 |
| BsiSI | CCGG | 3 cut(s) | 835, 1015, 1346 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 800, 804, 840, 841, 1091, 1260, 1356 |
| BsmAI | GTCTC | 1 cut(s) | 599 |
| BsmI | GAATGC | 2 cut(s) | 383, 1363 |
| BsnI | GGCC | 2 cut(s) | 838, 1349 |
| Bsp1286I | GDGCHC | 1 cut(s) | 712 |
| Bsp143I | GATC | 6 cut(s) | 77, 450, 458, 543, 781, 1290 |
| Bsp19I | CCATGG | 1 cut(s) | 839 |
| BspACI | CCGC | 5 cut(s) | 152, 246, 883, 1360, 1373 |
| BspANI | GGCC | 2 cut(s) | 838, 1349 |
| BspCNI | CTCAG | 1 cut(s) | 57 |
| BspFNI | CGCG | 1 cut(s) | 248 |
| BspLI | GGNNCC | 2 cut(s) | 273, 783 |
| BspPI | GGATC | 5 cut(s) | 466, 551, 776, 789, 1298 |
| BsrBI | CCGCTC | 1 cut(s) | 885 |
| BsrDI | GCAATG | 3 cut(s) | 158, 699, 1164 |
| BsrFI | RCCGGY | 1 cut(s) | 1345 |
| BsrI | ACTGG | 2 cut(s) | 987, 1131 |
| BssAI | RCCGGY | 1 cut(s) | 1345 |
| BssECI | CCNNGG | 7 cut(s) | 388, 798, 839, 922, 1006, 1085, 1355 |
| BssMI | GATC | 6 cut(s) | 77, 450, 458, 543, 781, 1290 |
| BssSI | CACGAG | 2 cut(s) | 513, 875 |
| BssT1I | CCWWGG | 2 cut(s) | 839, 1085 |
| Bst2BI | CACGAG | 2 cut(s) | 513, 875 |
| Bst2UI | CCWGG | 7 cut(s) | 398, 566, 799, 924, 1008, 1041, 1261 |
| Bst4CI | ACNGT | 6 cut(s) | 259, 325, 645, 763, 822, 1205 |
| Bst6I | CTCTTC | 3 cut(s) | 174, 177, 1180 |
| BstC8I | GCNNGC | 4 cut(s) | 477, 500, 522, 680 |
| BstDEI | CTNAG | 2 cut(s) | 44, 90 |
| BstDSI | CCRYGG | 1 cut(s) | 839 |
| BstEII | GGTNACC | 1 cut(s) | 1017 |
| BstF5I | GGATG | 4 cut(s) | 628, 637, 831, 1192 |
| BstFNI | CGCG | 1 cut(s) | 248 |
| BstKTI | GATC | 6 cut(s) | 80, 453, 461, 546, 784, 1293 |
| BstMAI | GTCTC | 1 cut(s) | 599 |
| BstMBI | GATC | 6 cut(s) | 77, 450, 458, 543, 781, 1290 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 160, 245, 296, 407, 416, 436, 1346, 1416 |
| BstNI | CCWGG | 7 cut(s) | 398, 566, 799, 924, 1008, 1041, 1261 |
| BstNSI | RCATGY | 2 cut(s) | 502, 599 |
| BstPI | GGTNACC | 1 cut(s) | 1017 |
| BstSCI | CCNGG | 8 cut(s) | 396, 564, 797, 833, 922, 1006, 1039, 1259 |
| BstSFI | CTRYAG | 2 cut(s) | 981, 1401 |
| BstUI | CGCG | 1 cut(s) | 248 |
| BstV1I | GCAGC | 8 cut(s) | 226, 283, 374, 625, 701, 817, 924, 1156 |
| BstV2I | GAAGAC | 1 cut(s) | 1119 |
| BstX2I | RGATCY | 2 cut(s) | 458, 781 |
| BstYI | RGATCY | 2 cut(s) | 458, 781 |
| BsuI | GTATCC | 2 cut(s) | 386, 1378 |
| BsuRI | GGCC | 2 cut(s) | 838, 1349 |
| BtgI | CCRYGG | 1 cut(s) | 839 |
| BtsCI | GGATG | 4 cut(s) | 628, 637, 831, 1192 |
| BtsI | GCAGTG | 1 cut(s) | 1426 |
| BtsIMutI | CAGTG | 4 cut(s) | 994, 1138, 1293, 1426 |
| Cac8I | GCNNGC | 4 cut(s) | 477, 500, 522, 680 |
| Cfr10I | RCCGGY | 1 cut(s) | 1345 |
| Cfr13I | GGNCC | 2 cut(s) | 880, 1370 |
| Csp6I | GTAC | 1 cut(s) | 1101 |
| CviAII | CATG | 8 cut(s) | 224, 499, 596, 683, 778, 840, 1198, 1228 |
| CviQI | GTAC | 1 cut(s) | 1101 |
| DdeI | CTNAG | 2 cut(s) | 44, 90 |
| DpnI | GATC | 6 cut(s) | 79, 452, 460, 545, 783, 1292 |
| DpnII | GATC | 6 cut(s) | 77, 450, 458, 543, 781, 1290 |
| EaeI | YGGCCR | 2 cut(s) | 836, 1347 |
| Eam1104I | CTCTTC | 3 cut(s) | 174, 177, 1180 |
| EarI | CTCTTC | 3 cut(s) | 174, 177, 1180 |
| EciI | GGCGGA | 1 cut(s) | 1362 |
| Eco130I | CCWWGG | 2 cut(s) | 839, 1085 |
| Eco47I | GGWCC | 2 cut(s) | 880, 1370 |
| Eco57I | CTGAAG | 2 cut(s) | 12, 1161 |
| Eco91I | GGTNACC | 1 cut(s) | 1017 |
| EcoO65I | GGTNACC | 1 cut(s) | 1017 |
| EcoRI | GAATTC | 1 cut(s) | 748 |
| EcoRII | CCWGG | 7 cut(s) | 396, 564, 797, 922, 1006, 1039, 1259 |
| EcoT14I | CCWWGG | 2 cut(s) | 839, 1085 |
| EcoT22I | ATGCAT | 1 cut(s) | 500 |
| ErhI | CCWWGG | 2 cut(s) | 839, 1085 |
| FaeI | CATG | 8 cut(s) | 227, 502, 599, 686, 781, 843, 1201, 1231 |
| FatI | CATG | 8 cut(s) | 223, 498, 595, 682, 777, 839, 1197, 1227 |
| FauNDI | CATATG | 1 cut(s) | 943 |
| FblI | GTMKAC | 1 cut(s) | 134 |
| Fnu4HI | GCNGC | 9 cut(s) | 215, 297, 363, 614, 690, 831, 913, 1170, 1361 |
| FokI | GGATG | 4 cut(s) | 635, 644, 838, 1199 |
| Fsp4HI | GCNGC | 9 cut(s) | 215, 297, 363, 614, 690, 831, 913, 1170, 1361 |
| FspBI | CTAG | 1 cut(s) | 537 |
| GluI | GCNGC | 9 cut(s) | 215, 297, 363, 614, 690, 831, 913, 1170, 1361 |
| GsaI | CCCAGC | 1 cut(s) | 1340 |
| GsuI | CTGGAG | 2 cut(s) | 270, 945 |
| HaeIII | GGCC | 2 cut(s) | 838, 1349 |
| HapII | CCGG | 3 cut(s) | 835, 1015, 1346 |
| Hin1II | CATG | 8 cut(s) | 227, 502, 599, 686, 781, 843, 1201, 1231 |
| HinfI | GANTC | 9 cut(s) | 53, 131, 373, 505, 847, 1011, 1270, 1310, 1326 |
| HpaII | CCGG | 3 cut(s) | 835, 1015, 1346 |
| HphI | GGTGA | 6 cut(s) | 217, 235, 445, 1011, 1068, 1335 |
| Hpy166II | GTNNAC | 1 cut(s) | 135 |
| Hpy188I | TCNGA | 7 cut(s) | 82, 314, 389, 548, 735, 967, 1221 |
| Hpy188III | TCNNGA | 1 cut(s) | 370 |
| Hpy8I | GTNNAC | 1 cut(s) | 135 |
| HpyAV | CCTTC | 6 cut(s) | 399, 693, 733, 1032, 1041, 1342 |
| HpyCH4III | ACNGT | 6 cut(s) | 259, 325, 645, 763, 822, 1205 |
| HpyCH4IV | ACGT | 1 cut(s) | 532 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 160, 245, 296, 407, 416, 436, 1346, 1416 |
| HpyF3I | CTNAG | 2 cut(s) | 44, 90 |
| HpySE526I | ACGT | 1 cut(s) | 532 |
| Hsp92II | CATG | 8 cut(s) | 227, 502, 599, 686, 781, 843, 1201, 1231 |
| Kzo9I | GATC | 6 cut(s) | 77, 450, 458, 543, 781, 1290 |
| LmnI | GCTCC | 2 cut(s) | 652, 807 |
| Lsp1109I | GCAGC | 8 cut(s) | 226, 283, 374, 625, 701, 817, 924, 1156 |
| MaeI | CTAG | 1 cut(s) | 537 |
| MaeII | ACGT | 1 cut(s) | 532 |
| MaeIII | GTNAC | 3 cut(s) | 325, 1017, 1223 |
| MalI | GATC | 6 cut(s) | 79, 452, 460, 545, 783, 1292 |
| MbiI | CCGCTC | 1 cut(s) | 885 |
| MboI | GATC | 6 cut(s) | 77, 450, 458, 543, 781, 1290 |
| MboII | GAAGA | 8 cut(s) | 18, 76, 106, 161, 194, 757, 1124, 1167 |
| MflI | RGATCY | 2 cut(s) | 458, 781 |
| MhlI | GDGCHC | 1 cut(s) | 712 |
| MluCI | AATT | 5 cut(s) | 125, 191, 748, 961, 1064 |
| MlyI | GAGTC | 6 cut(s) | 140, 499, 856, 1279, 1319, 1320 |
| MmeI | TCCRAC | 3 cut(s) | 785, 795, 1411 |
| Mph1103I | ATGCAT | 1 cut(s) | 500 |
| MseI | TTAA | 7 cut(s) | 194, 422, 591, 674, 894, 1317, 1394 |
| MspI | CCGG | 3 cut(s) | 835, 1015, 1346 |
| MspR9I | CCNGG | 8 cut(s) | 398, 566, 799, 835, 924, 1008, 1041, 1261 |
| Mva1269I | GAATGC | 2 cut(s) | 383, 1363 |
| MvaI | CCWGG | 7 cut(s) | 398, 566, 799, 924, 1008, 1041, 1261 |
| MvnI | CGCG | 1 cut(s) | 248 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 160, 245, 296, 407, 416, 436, 1346, 1416 |
| NciI | CCSGG | 1 cut(s) | 835 |
| NcoI | CCATGG | 1 cut(s) | 839 |
| NdeI | CATATG | 1 cut(s) | 943 |
| NdeII | GATC | 6 cut(s) | 77, 450, 458, 543, 781, 1290 |
| NlaIII | CATG | 8 cut(s) | 227, 502, 599, 686, 781, 843, 1201, 1231 |
| NlaIV | GGNNCC | 2 cut(s) | 273, 783 |
| NmuCI | GTSAC | 1 cut(s) | 1017 |
| NsiI | ATGCAT | 1 cut(s) | 500 |
| NspI | RCATGY | 2 cut(s) | 502, 599 |
| PaeI | GCATGC | 1 cut(s) | 502 |
| PctI | GAATGC | 2 cut(s) | 383, 1363 |
| PfeI | GAWTC | 3 cut(s) | 53, 373, 1011 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1091 |
| PkrI | GCNGC | 9 cut(s) | 216, 298, 364, 615, 691, 832, 914, 1171, 1362 |
| PleI | GAGTC | 6 cut(s) | 139, 499, 855, 1278, 1318, 1320 |
| PpsI | GAGTC | 6 cut(s) | 139, 499, 855, 1278, 1318, 1320 |
| Psp6I | CCWGG | 7 cut(s) | 396, 564, 797, 922, 1006, 1039, 1259 |
| PspEI | GGTNACC | 1 cut(s) | 1017 |
| PspFI | CCCAGC | 1 cut(s) | 1336 |
| PspGI | CCWGG | 7 cut(s) | 396, 564, 797, 922, 1006, 1039, 1259 |
| PspN4I | GGNNCC | 2 cut(s) | 273, 783 |
| PspPI | GGNCC | 2 cut(s) | 880, 1370 |
| PsuI | RGATCY | 2 cut(s) | 458, 781 |
| RsaI | GTAC | 1 cut(s) | 1102 |
| RsaNI | GTAC | 1 cut(s) | 1101 |
| SaqAI | TTAA | 7 cut(s) | 194, 422, 591, 674, 894, 1317, 1394 |
| SatI | GCNGC | 9 cut(s) | 215, 297, 363, 614, 690, 831, 913, 1170, 1361 |
| Sau3AI | GATC | 6 cut(s) | 77, 450, 458, 543, 781, 1290 |
| Sau96I | GGNCC | 2 cut(s) | 880, 1370 |
| SchI | GAGTC | 6 cut(s) | 140, 499, 856, 1279, 1319, 1320 |
| ScrFI | CCNGG | 8 cut(s) | 398, 566, 799, 835, 924, 1008, 1041, 1261 |
| SduI | GDGCHC | 1 cut(s) | 712 |
| SfcI | CTRYAG | 2 cut(s) | 981, 1401 |
| SinI | GGWCC | 2 cut(s) | 880, 1370 |
| SmlI | CTYRAG | 1 cut(s) | 291 |
| SmoI | CTYRAG | 1 cut(s) | 291 |
| SphI | GCATGC | 1 cut(s) | 502 |
| Sse9I | AATT | 5 cut(s) | 125, 191, 748, 961, 1064 |
| SsiI | CCGC | 5 cut(s) | 152, 246, 883, 1360, 1373 |
| SspMI | CTAG | 1 cut(s) | 537 |
| StyD4I | CCNGG | 8 cut(s) | 396, 564, 797, 833, 922, 1006, 1039, 1259 |
| StyI | CCWWGG | 2 cut(s) | 839, 1085 |
| TaaI | ACNGT | 6 cut(s) | 259, 325, 645, 763, 822, 1205 |
| TaiI | ACGT | 1 cut(s) | 535 |
| TaqI | TCGA | 4 cut(s) | 331, 453, 949, 1060 |
| TaqII | GACCGA | 1 cut(s) | 1369 |
| TasI | AATT | 5 cut(s) | 125, 191, 748, 961, 1064 |
| TauI | GCSGC | 1 cut(s) | 1363 |
| TfiI | GAWTC | 3 cut(s) | 53, 373, 1011 |
| Tru1I | TTAA | 7 cut(s) | 194, 422, 591, 674, 894, 1317, 1394 |
| Tru9I | TTAA | 7 cut(s) | 194, 422, 591, 674, 894, 1317, 1394 |
| TscAI | CASTG | 4 cut(s) | 994, 1138, 1300, 1426 |
| TseFI | GTSAC | 1 cut(s) | 1017 |
| TseI | GCWGC | 8 cut(s) | 214, 296, 362, 613, 689, 830, 912, 1169 |
| Tsp45I | GTSAC | 1 cut(s) | 1017 |
| TspDTI | ATGAA | 5 cut(s) | 639, 699, 766, 1125, 1206 |
| TspRI | CASTG | 4 cut(s) | 994, 1138, 1300, 1426 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1091 |
| VpaK11BI | GGWCC | 2 cut(s) | 880, 1370 |
| XapI | RAATTY | 2 cut(s) | 748, 961 |
| XceI | RCATGY | 2 cut(s) | 502, 599 |
| XmiI | GTMKAC | 1 cut(s) | 134 |
| XspI | CTAG | 1 cut(s) | 537 |
| Zsp2I | ATGCAT | 1 cut(s) | 500 |