FvH4_6g15440

IQ-DOMAIN 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
9594814 .. 9599028
4215 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15440.t1

Sequence Viewer

Length: 1440 bp
ATGGGGAGGAAAGGAACTTGGTTTTCTTCAGTAAAGAAAGCTCTCAGCCCTGATTCTAAAGAGAAGAAAGAACAGAGATCAGATAAGTCTAAGAAGAAATGGTTTGGGAAGCAAAAACAACCACAATTTGAGTCTACCTCTTTAGCACCACCGCCCACATTGCCACCTCTTCCTCCACAAGAAGAGGTCAAATTAACCAATGTGGTGAATGAGCAGCAAAATCATGCTTACCCTGTTGCAATCACCGCGACTGCAACTGTTGAGCCAGAGGTTCCTACACCTCCTCCAGCTCAAGCTGCCCCAGAGGTTGTCAGATTGCCCACAGTTACTCGATATGCTGGAAAATCAAGGGAGGAAGTGGCAGCAATCAAGATTCAAACAGCATTCCGAGGATACCTGGCGAGAAGGGCATTGAGGGCTTTAAGAGGGCTGGTGAGGCTGAAAACATTGATCGAGGGATCTGTTGTGAAACGGCAAGCGACAAATACCCTCAAATGCATGCAGACTCTATCTCGTGTGCAAGCTCAAATACGTTCTAGGAGGATCAGAATGTTAGAGGAGAACCAGGCTCTCCAAAGACAACTCCTACTTAAACATGCAAAAGAGACTTTGCAGCTTGGGGATGAATGGGATGATAGCTTACAGTCAAAGGAGCAAGTTGAAGCAAACCTATTAAGCAAGCATGAAGCAGCAATGAGAAGGGAAAGAGCACTCGCTTATGCCTTCTCTCATCAGAAAAATGGGAAGAATTCTGCAAAAACTGTAAATCCAATGTTCATGGATCCAAGCAATCCCACCTGGGGTTGGAGCTGGTTGGAACGGTGGATGGCTGCCCGGCCATGGGAGAGTCGTGGCACGACAGATAAAGAAATCCACGAGGACCGCTCATCTGTTAAGAGTGTTATTTCTCGCAGCATTTCCCCTGGAGAAATCAACAAGTCATATGCTCGATACCTCCTAAATTCCGATAAGCAATCCCCTACAGCCAGTGAAAAGCCAAGCCACCCTGGATTCCGGTCACCTTCAACTCCTTCAAAGCCAGGTTCTACAAAAGTAGCTCGAAAATTGAAGCCATCACCAAGCCCAAGGGGTGGTGTTCGTACCCCAGATGAAGACACAAATAGCATAGCCAGTGTGCAGTCAGTTCAGTTTAGGAGGCACAGCATTGCTGCCTCTTCAGTAAGGGATGATGAAAGCATGGACAGTTCTCCATCACTTCCGAGTTACATGATACCAACTAAATCTGCAAGAGCCAAGTCCAGGTTGCAGAGTCCAGCAGAAAAGAATGGGATCACTGAAAAGGATAGCGAGTCTGTTAAGAAACGACTCTCCTTCCCAGCCTCACCGGCCAGACCGAGGCGGCATTCTGGTCCGCCAAAGGTGGATACAACTTTAATCACTACAGAAAGCAAAGTGAGCAGTGTTGAAGTTGGAAGTTGA

Protein Analysis

480

Amino Acids

53.33

Weight (kDa)

10.21

Isoelectric Point (pI)

65.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IQ PF00612 121 - 139 5.6e-06 IQ calmodulin-binding motif
DUF4005 PF13178 393 - 451 1.2e-06 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1091
AccBSI CCGCTC 1 cut(s) 885
AccI GTMKAC 1 cut(s) 134
AccII CGCG 1 cut(s) 248
AciI CCGC 5 cut(s) 152, 246, 883, 1360, 1373
AclWI GGATC 5 cut(s) 466, 551, 776, 789, 1298
AcoI YGGCCR 2 cut(s) 836, 1347
AcsI RAATTY 2 cut(s) 748, 961
AcuI CTGAAG 2 cut(s) 12, 1161
AfaI GTAC 1 cut(s) 1102
AfiI CCNNNNNNNGG 7 cut(s) 800, 804, 840, 841, 1091, 1260, 1356
AgsI TTSAA 6 cut(s) 377, 662, 1026, 1035, 1069, 1427
AjnI CCWGG 7 cut(s) 396, 564, 797, 922, 1006, 1039, 1259
AluBI AGCT 8 cut(s) 41, 290, 296, 524, 616, 639, 810, 1058
AluI AGCT 8 cut(s) 41, 290, 296, 524, 616, 639, 810, 1058
Alw21I GWGCWC 1 cut(s) 712
Alw26I GTCTC 1 cut(s) 599
AlwI GGATC 5 cut(s) 466, 551, 776, 789, 1298
AoxI GGCC 2 cut(s) 836, 1347
ApeKI GCWGC 8 cut(s) 214, 296, 362, 613, 689, 830, 912, 1169
ApoI RAATTY 2 cut(s) 748, 961
AspS9I GGNCC 2 cut(s) 880, 1370
AsuC2I CCSGG 1 cut(s) 835
AsuHPI GGTGA 6 cut(s) 217, 235, 445, 1011, 1068, 1335
AvaII GGWCC 2 cut(s) 880, 1370
BamHI GGATCC 1 cut(s) 781
BauI CACGAG 2 cut(s) 513, 875
BbsI GAAGAC 1 cut(s) 1119
Bbv12I GWGCWC 1 cut(s) 712
BbvI GCAGC 8 cut(s) 226, 283, 374, 625, 701, 817, 924, 1156
BccI CCATC 3 cut(s) 820, 1081, 1219
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 7 cut(s) 398, 566, 799, 924, 1008, 1041, 1261
BciVI GTATCC 2 cut(s) 386, 1378
BcnI CCSGG 1 cut(s) 835
BcoDI GTCTC 1 cut(s) 599
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 2 cut(s) 981, 1401
BfuI GTATCC 2 cut(s) 386, 1378
BglI GCCNNNNNGGC 1 cut(s) 1346
BisI GCNGC 9 cut(s) 215, 297, 363, 614, 690, 831, 913, 1170, 1361
BlsI GCNGC 9 cut(s) 216, 298, 364, 615, 691, 832, 914, 1171, 1362
Bme1390I CCNGG 8 cut(s) 398, 566, 799, 835, 924, 1008, 1041, 1261
Bme18I GGWCC 2 cut(s) 880, 1370
BmgT120I GGNCC 2 cut(s) 880, 1370
BmiI GGNNCC 2 cut(s) 273, 783
BmrFI CCNGG 8 cut(s) 398, 566, 799, 835, 924, 1008, 1041, 1261
BpiI GAAGAC 1 cut(s) 1119
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 869, 901
BpmI CTGGAG 2 cut(s) 270, 945
BpuEI CTTGAG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 835
BsaJI CCNNGG 7 cut(s) 388, 798, 839, 922, 1006, 1085, 1355
BsaWI WCCGGW 1 cut(s) 1014
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 7 cut(s) 800, 804, 840, 841, 1091, 1260, 1356
Bse118I RCCGGY 1 cut(s) 1345
Bse1I ACTGG 2 cut(s) 987, 1131
Bse3DI GCAATG 3 cut(s) 158, 699, 1164
BseBI CCWGG 7 cut(s) 398, 566, 799, 924, 1008, 1041, 1261
BseDI CCNNGG 7 cut(s) 388, 798, 839, 922, 1006, 1085, 1355
BseGI GGATG 4 cut(s) 628, 637, 831, 1192
BseLI CCNNNNNNNGG 7 cut(s) 800, 804, 840, 841, 1091, 1260, 1356
BseMI GCAATG 3 cut(s) 158, 699, 1164
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 987, 1131
BseRI GAGGAG 2 cut(s) 273, 572
BseXI GCAGC 8 cut(s) 226, 283, 374, 625, 701, 817, 924, 1156
BseYI CCCAGC 1 cut(s) 1336
BsgI GTGCAG 1 cut(s) 1157
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 2 cut(s) 838, 1349
BsiHKAI GWGCWC 1 cut(s) 712
BsiSI CCGG 3 cut(s) 835, 1015, 1346
BslI CCNNNNNNNGG 7 cut(s) 800, 804, 840, 841, 1091, 1260, 1356
BsmAI GTCTC 1 cut(s) 599
BsmI GAATGC 2 cut(s) 383, 1363
BsnI GGCC 2 cut(s) 838, 1349
Bsp1286I GDGCHC 1 cut(s) 712
Bsp143I GATC 6 cut(s) 77, 450, 458, 543, 781, 1290
Bsp19I CCATGG 1 cut(s) 839
BspACI CCGC 5 cut(s) 152, 246, 883, 1360, 1373
BspANI GGCC 2 cut(s) 838, 1349
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 2 cut(s) 273, 783
BspPI GGATC 5 cut(s) 466, 551, 776, 789, 1298
BsrBI CCGCTC 1 cut(s) 885
BsrDI GCAATG 3 cut(s) 158, 699, 1164
BsrFI RCCGGY 1 cut(s) 1345
BsrI ACTGG 2 cut(s) 987, 1131
BssAI RCCGGY 1 cut(s) 1345
BssECI CCNNGG 7 cut(s) 388, 798, 839, 922, 1006, 1085, 1355
BssMI GATC 6 cut(s) 77, 450, 458, 543, 781, 1290
BssSI CACGAG 2 cut(s) 513, 875
BssT1I CCWWGG 2 cut(s) 839, 1085
Bst2BI CACGAG 2 cut(s) 513, 875
Bst2UI CCWGG 7 cut(s) 398, 566, 799, 924, 1008, 1041, 1261
Bst4CI ACNGT 6 cut(s) 259, 325, 645, 763, 822, 1205
Bst6I CTCTTC 3 cut(s) 174, 177, 1180
BstC8I GCNNGC 4 cut(s) 477, 500, 522, 680
BstDEI CTNAG 2 cut(s) 44, 90
BstDSI CCRYGG 1 cut(s) 839
BstEII GGTNACC 1 cut(s) 1017
BstF5I GGATG 4 cut(s) 628, 637, 831, 1192
BstFNI CGCG 1 cut(s) 248
BstKTI GATC 6 cut(s) 80, 453, 461, 546, 784, 1293
BstMAI GTCTC 1 cut(s) 599
BstMBI GATC 6 cut(s) 77, 450, 458, 543, 781, 1290
BstMWI GCNNNNNNNGC 8 cut(s) 160, 245, 296, 407, 416, 436, 1346, 1416
BstNI CCWGG 7 cut(s) 398, 566, 799, 924, 1008, 1041, 1261
BstNSI RCATGY 2 cut(s) 502, 599
BstPI GGTNACC 1 cut(s) 1017
BstSCI CCNGG 8 cut(s) 396, 564, 797, 833, 922, 1006, 1039, 1259
BstSFI CTRYAG 2 cut(s) 981, 1401
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 8 cut(s) 226, 283, 374, 625, 701, 817, 924, 1156
BstV2I GAAGAC 1 cut(s) 1119
BstX2I RGATCY 2 cut(s) 458, 781
BstYI RGATCY 2 cut(s) 458, 781
BsuI GTATCC 2 cut(s) 386, 1378
BsuRI GGCC 2 cut(s) 838, 1349
BtgI CCRYGG 1 cut(s) 839
BtsCI GGATG 4 cut(s) 628, 637, 831, 1192
BtsI GCAGTG 1 cut(s) 1426
BtsIMutI CAGTG 4 cut(s) 994, 1138, 1293, 1426
Cac8I GCNNGC 4 cut(s) 477, 500, 522, 680
Cfr10I RCCGGY 1 cut(s) 1345
Cfr13I GGNCC 2 cut(s) 880, 1370
Csp6I GTAC 1 cut(s) 1101
CviAII CATG 8 cut(s) 224, 499, 596, 683, 778, 840, 1198, 1228
CviQI GTAC 1 cut(s) 1101
DdeI CTNAG 2 cut(s) 44, 90
DpnI GATC 6 cut(s) 79, 452, 460, 545, 783, 1292
DpnII GATC 6 cut(s) 77, 450, 458, 543, 781, 1290
EaeI YGGCCR 2 cut(s) 836, 1347
Eam1104I CTCTTC 3 cut(s) 174, 177, 1180
EarI CTCTTC 3 cut(s) 174, 177, 1180
EciI GGCGGA 1 cut(s) 1362
Eco130I CCWWGG 2 cut(s) 839, 1085
Eco47I GGWCC 2 cut(s) 880, 1370
Eco57I CTGAAG 2 cut(s) 12, 1161
Eco91I GGTNACC 1 cut(s) 1017
EcoO65I GGTNACC 1 cut(s) 1017
EcoRI GAATTC 1 cut(s) 748
EcoRII CCWGG 7 cut(s) 396, 564, 797, 922, 1006, 1039, 1259
EcoT14I CCWWGG 2 cut(s) 839, 1085
EcoT22I ATGCAT 1 cut(s) 500
ErhI CCWWGG 2 cut(s) 839, 1085
FaeI CATG 8 cut(s) 227, 502, 599, 686, 781, 843, 1201, 1231
FatI CATG 8 cut(s) 223, 498, 595, 682, 777, 839, 1197, 1227
FauNDI CATATG 1 cut(s) 943
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 9 cut(s) 215, 297, 363, 614, 690, 831, 913, 1170, 1361
FokI GGATG 4 cut(s) 635, 644, 838, 1199
Fsp4HI GCNGC 9 cut(s) 215, 297, 363, 614, 690, 831, 913, 1170, 1361
FspBI CTAG 1 cut(s) 537
GluI GCNGC 9 cut(s) 215, 297, 363, 614, 690, 831, 913, 1170, 1361
GsaI CCCAGC 1 cut(s) 1340
GsuI CTGGAG 2 cut(s) 270, 945
HaeIII GGCC 2 cut(s) 838, 1349
HapII CCGG 3 cut(s) 835, 1015, 1346
Hin1II CATG 8 cut(s) 227, 502, 599, 686, 781, 843, 1201, 1231
HinfI GANTC 9 cut(s) 53, 131, 373, 505, 847, 1011, 1270, 1310, 1326
HpaII CCGG 3 cut(s) 835, 1015, 1346
HphI GGTGA 6 cut(s) 217, 235, 445, 1011, 1068, 1335
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 7 cut(s) 82, 314, 389, 548, 735, 967, 1221
Hpy188III TCNNGA 1 cut(s) 370
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 6 cut(s) 399, 693, 733, 1032, 1041, 1342
HpyCH4III ACNGT 6 cut(s) 259, 325, 645, 763, 822, 1205
HpyCH4IV ACGT 1 cut(s) 532
HpyF10VI GCNNNNNNNGC 8 cut(s) 160, 245, 296, 407, 416, 436, 1346, 1416
HpyF3I CTNAG 2 cut(s) 44, 90
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 8 cut(s) 227, 502, 599, 686, 781, 843, 1201, 1231
Kzo9I GATC 6 cut(s) 77, 450, 458, 543, 781, 1290
LmnI GCTCC 2 cut(s) 652, 807
Lsp1109I GCAGC 8 cut(s) 226, 283, 374, 625, 701, 817, 924, 1156
MaeI CTAG 1 cut(s) 537
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 3 cut(s) 325, 1017, 1223
MalI GATC 6 cut(s) 79, 452, 460, 545, 783, 1292
MbiI CCGCTC 1 cut(s) 885
MboI GATC 6 cut(s) 77, 450, 458, 543, 781, 1290
MboII GAAGA 8 cut(s) 18, 76, 106, 161, 194, 757, 1124, 1167
MflI RGATCY 2 cut(s) 458, 781
MhlI GDGCHC 1 cut(s) 712
MluCI AATT 5 cut(s) 125, 191, 748, 961, 1064
MlyI GAGTC 6 cut(s) 140, 499, 856, 1279, 1319, 1320
MmeI TCCRAC 3 cut(s) 785, 795, 1411
Mph1103I ATGCAT 1 cut(s) 500
MseI TTAA 7 cut(s) 194, 422, 591, 674, 894, 1317, 1394
MspI CCGG 3 cut(s) 835, 1015, 1346
MspR9I CCNGG 8 cut(s) 398, 566, 799, 835, 924, 1008, 1041, 1261
Mva1269I GAATGC 2 cut(s) 383, 1363
MvaI CCWGG 7 cut(s) 398, 566, 799, 924, 1008, 1041, 1261
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 8 cut(s) 160, 245, 296, 407, 416, 436, 1346, 1416
NciI CCSGG 1 cut(s) 835
NcoI CCATGG 1 cut(s) 839
NdeI CATATG 1 cut(s) 943
NdeII GATC 6 cut(s) 77, 450, 458, 543, 781, 1290
NlaIII CATG 8 cut(s) 227, 502, 599, 686, 781, 843, 1201, 1231
NlaIV GGNNCC 2 cut(s) 273, 783
NmuCI GTSAC 1 cut(s) 1017
NsiI ATGCAT 1 cut(s) 500
NspI RCATGY 2 cut(s) 502, 599
PaeI GCATGC 1 cut(s) 502
PctI GAATGC 2 cut(s) 383, 1363
PfeI GAWTC 3 cut(s) 53, 373, 1011
PflMI CCANNNNNTGG 1 cut(s) 1091
PkrI GCNGC 9 cut(s) 216, 298, 364, 615, 691, 832, 914, 1171, 1362
PleI GAGTC 6 cut(s) 139, 499, 855, 1278, 1318, 1320
PpsI GAGTC 6 cut(s) 139, 499, 855, 1278, 1318, 1320
Psp6I CCWGG 7 cut(s) 396, 564, 797, 922, 1006, 1039, 1259
PspEI GGTNACC 1 cut(s) 1017
PspFI CCCAGC 1 cut(s) 1336
PspGI CCWGG 7 cut(s) 396, 564, 797, 922, 1006, 1039, 1259
PspN4I GGNNCC 2 cut(s) 273, 783
PspPI GGNCC 2 cut(s) 880, 1370
PsuI RGATCY 2 cut(s) 458, 781
RsaI GTAC 1 cut(s) 1102
RsaNI GTAC 1 cut(s) 1101
SaqAI TTAA 7 cut(s) 194, 422, 591, 674, 894, 1317, 1394
SatI GCNGC 9 cut(s) 215, 297, 363, 614, 690, 831, 913, 1170, 1361
Sau3AI GATC 6 cut(s) 77, 450, 458, 543, 781, 1290
Sau96I GGNCC 2 cut(s) 880, 1370
SchI GAGTC 6 cut(s) 140, 499, 856, 1279, 1319, 1320
ScrFI CCNGG 8 cut(s) 398, 566, 799, 835, 924, 1008, 1041, 1261
SduI GDGCHC 1 cut(s) 712
SfcI CTRYAG 2 cut(s) 981, 1401
SinI GGWCC 2 cut(s) 880, 1370
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
SphI GCATGC 1 cut(s) 502
Sse9I AATT 5 cut(s) 125, 191, 748, 961, 1064
SsiI CCGC 5 cut(s) 152, 246, 883, 1360, 1373
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 8 cut(s) 396, 564, 797, 833, 922, 1006, 1039, 1259
StyI CCWWGG 2 cut(s) 839, 1085
TaaI ACNGT 6 cut(s) 259, 325, 645, 763, 822, 1205
TaiI ACGT 1 cut(s) 535
TaqI TCGA 4 cut(s) 331, 453, 949, 1060
TaqII GACCGA 1 cut(s) 1369
TasI AATT 5 cut(s) 125, 191, 748, 961, 1064
TauI GCSGC 1 cut(s) 1363
TfiI GAWTC 3 cut(s) 53, 373, 1011
Tru1I TTAA 7 cut(s) 194, 422, 591, 674, 894, 1317, 1394
Tru9I TTAA 7 cut(s) 194, 422, 591, 674, 894, 1317, 1394
TscAI CASTG 4 cut(s) 994, 1138, 1300, 1426
TseFI GTSAC 1 cut(s) 1017
TseI GCWGC 8 cut(s) 214, 296, 362, 613, 689, 830, 912, 1169
Tsp45I GTSAC 1 cut(s) 1017
TspDTI ATGAA 5 cut(s) 639, 699, 766, 1125, 1206
TspRI CASTG 4 cut(s) 994, 1138, 1300, 1426
Van91I CCANNNNNTGG 1 cut(s) 1091
VpaK11BI GGWCC 2 cut(s) 880, 1370
XapI RAATTY 2 cut(s) 748, 961
XceI RCATGY 2 cut(s) 502, 599
XmiI GTMKAC 1 cut(s) 134
XspI CTAG 1 cut(s) 537
Zsp2I ATGCAT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.