Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008563

Physical Location & Seq

Genomic Coordinates Forward (+)

35021128 .. 35025110

Gene Structure 3983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGGAGGAAAGGAAATTGGTTTTCTTCAGTAAAGAAAGCTCTCAGCCCTGATTCCAAAGAGAAGAAAGAACAGAGATCAGATAAGTCTAAAAAGAAATGGTTTGGGAAGCAAAAACAGCCACAATATGAGTCTACCTCTTTAGCACCACCGCCCACATCCCCACCACTTCCTCCACAAGAAGAGGTGAAATTAACCAATGTGGTGAATGAGCAGCAAAATTATGCTTACCCTGTTGCAATCACCGCTACTGCAACAGTTGAGCCAGAGGTTCCTGCACCTCCTCCGGTTCAAGCCGCCCCTGAGGTTGTCAGATTGCCCACAGTTACTCGATATGCTGGAAAATCAAGGGAGGAAGTGGCAGCAATCAAGATTCAAACAGCATTTCGAGGATACCTGGCAAGAAGGGCACTGAGGGCTTTAAGAGGGCTGGTGAGGCTGAAAACATTGATAGAGGGATCTGTTGTGAAACGGCAAGCCACAAATACCCTCAAATGCATGCAGACTCTATCTCGTGTGCAAGCTCAAATACGTTCCAGGAGGATCAGAATGTTAGAGGAGAACCAGGCTCTCCAAAGGCAACTCCTACTTAAACATGCAAAAGAGACTTTGCAGCTTGGGGATGAATGGGATGATAGCTTACAGTCAAAGGAGCAAGTTGAAGCAAACCTATTAAGCAAGCATGAAGCAGCAATGAGAAGGGAAAAGAGCCCTCGCTTATGCCTTCTCTCATCAGAAAAACGGGAAGAATTCTGCAAAATCTGTAAACCCAATGTTCATGGATCCAAGCAATCCAACCTGGGGTTGGAGCTGGTTGGAACGGTGGATGGCTGCCCGGCCATGGGAGAGTCGTGGCATGACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

288

Amino Acids

32.44

Weight (kDa)

9.81

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IQ	PF00612	121 - 139	3e-06	IQ calmodulin-binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52290 AT5G03040 AT5G03040 AT5G03040
fragaria_vesca	FvH4_6g15440 FvH4_6g15440
malus_domestica	MD04G1103600.v1.1 MD12G1123500.v1.1
prunus_persica	Prupe.6G239700_v2.0.a1
pyrus_communis	pycom04g09880 pycom12g12220
rosa_chinensis	RchiOBHm_Chr3g0468921
rosa_laevigata	RLG00000024400
rosa_multiflora	Rmu_co8378931.1_g000001 Rmu_sc0001639.1_g000010 Rmu_sc0003298.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412460
rosa_rugosa	Rorug03G0097600 Rorug03G0097600
rosa_samantha	Rh3AG147200 Rh3BG169800 Rh3DG205300
rosa_wichuraiana	Rw3G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AciI	CCGC	3 cut(s)	152, 246, 297
AclWI	GGATC	4 cut(s)	466, 551, 777, 790
AcoI	YGGCCR	1 cut(s)	837
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	1 cut(s)	12
AfiI	CCNNNNNNNGG	4 cut(s)	801, 805, 841, 842
AgsI	TTSAA	3 cut(s)	293, 377, 662
AjnI	CCWGG	4 cut(s)	396, 536, 564, 798
AluBI	AGCT	5 cut(s)	41, 524, 616, 639, 811
AluI	AGCT	5 cut(s)	41, 524, 616, 639, 811
Alw26I	GTCTC	1 cut(s)	599
AlwI	GGATC	4 cut(s)	466, 551, 777, 790
AoxI	GGCC	1 cut(s)	837
ApeKI	GCWGC	5 cut(s)	214, 362, 613, 689, 831
ApoI	RAATTY	1 cut(s)	749
AsuC2I	CCSGG	1 cut(s)	836
AsuHPI	GGTGA	4 cut(s)	199, 217, 235, 445
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	412
BamHI	GGATCC	1 cut(s)	782
BanII	GRGCYC	1 cut(s)	713
BauI	CACGAG	1 cut(s)	513
BbvI	GCAGC	5 cut(s)	226, 374, 625, 701, 818
BccI	CCATC	1 cut(s)	821
BceAI	ACGGC	1 cut(s)	488
BciT130I	CCWGG	4 cut(s)	398, 538, 566, 800
BciVI	GTATCC	1 cut(s)	386
BcnI	CCSGG	1 cut(s)	836
BcoDI	GTCTC	1 cut(s)	599
BfuI	GTATCC	1 cut(s)	386
BisI	GCNGC	6 cut(s)	215, 297, 363, 614, 690, 832
BlsI	GCNGC	6 cut(s)	216, 298, 364, 615, 691, 833
Bme1390I	CCNGG	5 cut(s)	398, 538, 566, 800, 836
BmiI	GGNNCC	2 cut(s)	273, 784
BmrFI	CCNGG	5 cut(s)	398, 538, 566, 800, 836
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpuMI	CCSGG	1 cut(s)	836
BsaJI	CCNNGG	2 cut(s)	799, 840
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	4 cut(s)	801, 805, 841, 842
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	699
BseBI	CCWGG	4 cut(s)	398, 538, 566, 800
BseDI	CCNNGG	2 cut(s)	799, 840
BseGI	GGATG	4 cut(s)	158, 628, 637, 832
BseLI	CCNNNNNNNGG	4 cut(s)	801, 805, 841, 842
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	3 cut(s)	58, 294, 404
BseRI	GAGGAG	2 cut(s)	273, 572
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	5 cut(s)	226, 374, 625, 701, 818
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	839
BsiSI	CCGG	2 cut(s)	287, 836
BslI	CCNNNNNNNGG	4 cut(s)	801, 805, 841, 842
BsmAI	GTCTC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	839
Bsp1286I	GDGCHC	2 cut(s)	412, 713
Bsp143I	GATC	4 cut(s)	77, 458, 543, 782
Bsp19I	CCATGG	1 cut(s)	840
BspACI	CCGC	3 cut(s)	152, 246, 297
BspANI	GGCC	1 cut(s)	839
BspCNI	CTCAG	3 cut(s)	57, 295, 405
BspLI	GGNNCC	2 cut(s)	273, 784
BspPI	GGATC	4 cut(s)	466, 551, 777, 790
BsrDI	GCAATG	1 cut(s)	699
BssECI	CCNNGG	2 cut(s)	799, 840
BssMI	GATC	4 cut(s)	77, 458, 543, 782
BssSI	CACGAG	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	840
Bst2BI	CACGAG	1 cut(s)	513
Bst2UI	CCWGG	4 cut(s)	398, 538, 566, 800
Bst4CI	ACNGT	4 cut(s)	259, 325, 645, 823
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	4 cut(s)	477, 500, 522, 680
BstDEI	CTNAG	3 cut(s)	44, 303, 413
BstDSI	CCRYGG	1 cut(s)	840
BstF5I	GGATG	4 cut(s)	158, 628, 637, 832
BstKTI	GATC	4 cut(s)	80, 461, 546, 785
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	4 cut(s)	77, 458, 543, 782
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 245, 407, 416, 436
BstNI	CCWGG	4 cut(s)	398, 538, 566, 800
BstNSI	RCATGY	2 cut(s)	502, 599
BstSCI	CCNGG	5 cut(s)	396, 536, 564, 798, 834
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	5 cut(s)	226, 374, 625, 701, 818
BstX2I	RGATCY	2 cut(s)	458, 782
BstYI	RGATCY	2 cut(s)	458, 782
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	839
BtgI	CCRYGG	1 cut(s)	840
BtsCI	GGATG	4 cut(s)	158, 628, 637, 832
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	4 cut(s)	477, 500, 522, 680
CviAII	CATG	6 cut(s)	499, 596, 683, 779, 841, 857
DdeI	CTNAG	3 cut(s)	44, 303, 413
DpnI	GATC	4 cut(s)	79, 460, 545, 784
DpnII	GATC	4 cut(s)	77, 458, 543, 782
EaeI	YGGCCR	1 cut(s)	837
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	840
Eco24I	GRGCYC	1 cut(s)	713
Eco57I	CTGAAG	1 cut(s)	12
Eco81I	CCTNAGG	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	749
EcoRII	CCWGG	4 cut(s)	396, 536, 564, 798
EcoT14I	CCWWGG	1 cut(s)	840
EcoT22I	ATGCAT	1 cut(s)	500
EcoT38I	GRGCYC	1 cut(s)	713
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	6 cut(s)	502, 599, 686, 782, 844, 860
FatI	CATG	6 cut(s)	498, 595, 682, 778, 840, 856
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	6 cut(s)	215, 297, 363, 614, 690, 832
FokI	GGATG	4 cut(s)	145, 635, 644, 839
FriOI	GRGCYC	1 cut(s)	713
Fsp4HI	GCNGC	6 cut(s)	215, 297, 363, 614, 690, 832
GluI	GCNGC	6 cut(s)	215, 297, 363, 614, 690, 832
HaeIII	GGCC	1 cut(s)	839
HapII	CCGG	2 cut(s)	287, 836
Hin1II	CATG	6 cut(s)	502, 599, 686, 782, 844, 860
HinfI	GANTC	5 cut(s)	53, 131, 373, 505, 848
HpaII	CCGG	2 cut(s)	287, 836
HphI	GGTGA	4 cut(s)	199, 217, 235, 445
Hpy166II	GTNNAC	2 cut(s)	135, 767
Hpy188I	TCNGA	4 cut(s)	82, 314, 548, 736
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	2 cut(s)	135, 767
HpyAV	CCTTC	3 cut(s)	399, 693, 734
HpyCH4III	ACNGT	4 cut(s)	259, 325, 645, 823
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	9 cut(s)	239, 254, 278, 498, 502, 520, 599, 613, 756
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 245, 407, 416, 436
HpyF3I	CTNAG	3 cut(s)	44, 303, 413
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	6 cut(s)	502, 599, 686, 782, 844, 860
Kzo9I	GATC	4 cut(s)	77, 458, 543, 782
LmnI	GCTCC	2 cut(s)	652, 808
Lsp1109I	GCAGC	5 cut(s)	226, 374, 625, 701, 818
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	4 cut(s)	79, 460, 545, 784
MboI	GATC	4 cut(s)	77, 458, 543, 782
MboII	GAAGA	4 cut(s)	18, 76, 194, 758
MflI	RGATCY	2 cut(s)	458, 782
MhlI	GDGCHC	2 cut(s)	412, 713
MluCI	AATT	4 cut(s)	16, 191, 220, 749
MlyI	GAGTC	3 cut(s)	140, 499, 857
MmeI	TCCRAC	3 cut(s)	786, 796, 819
Mph1103I	ATGCAT	1 cut(s)	500
MseI	TTAA	4 cut(s)	194, 422, 591, 674
MspI	CCGG	2 cut(s)	287, 836
MspR9I	CCNGG	5 cut(s)	398, 538, 566, 800, 836
MvaI	CCWGG	4 cut(s)	398, 538, 566, 800
MwoI	GCNNNNNNNGC	5 cut(s)	118, 245, 407, 416, 436
NciI	CCSGG	1 cut(s)	836
NcoI	CCATGG	1 cut(s)	840
NdeII	GATC	4 cut(s)	77, 458, 543, 782
NlaIII	CATG	6 cut(s)	502, 599, 686, 782, 844, 860
NlaIV	GGNNCC	2 cut(s)	273, 784
NsiI	ATGCAT	1 cut(s)	500
NspI	RCATGY	2 cut(s)	502, 599
PaeI	GCATGC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	53, 373
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	6 cut(s)	216, 298, 364, 615, 691, 833
PleI	GAGTC	3 cut(s)	139, 499, 856
PpsI	GAGTC	3 cut(s)	139, 499, 856
Psp6I	CCWGG	4 cut(s)	396, 536, 564, 798
PspGI	CCWGG	4 cut(s)	396, 536, 564, 798
PspN4I	GGNNCC	2 cut(s)	273, 784
PsuI	RGATCY	2 cut(s)	458, 782
SaqAI	TTAA	4 cut(s)	194, 422, 591, 674
SatI	GCNGC	6 cut(s)	215, 297, 363, 614, 690, 832
Sau3AI	GATC	4 cut(s)	77, 458, 543, 782
SchI	GAGTC	3 cut(s)	140, 499, 857
ScrFI	CCNGG	5 cut(s)	398, 538, 566, 800, 836
SduI	GDGCHC	2 cut(s)	412, 713
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	4 cut(s)	16, 191, 220, 749
SsiI	CCGC	3 cut(s)	152, 246, 297
StyD4I	CCNGG	5 cut(s)	396, 536, 564, 798, 834
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	4 cut(s)	259, 325, 645, 823
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	2 cut(s)	331, 388
TasI	AATT	4 cut(s)	16, 191, 220, 749
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	53, 373
Tru1I	TTAA	4 cut(s)	194, 422, 591, 674
Tru9I	TTAA	4 cut(s)	194, 422, 591, 674
TscAI	CASTG	1 cut(s)	417
TseI	GCWGC	5 cut(s)	214, 362, 613, 689, 831
TspDTI	ATGAA	3 cut(s)	639, 699, 767
TspRI	CASTG	1 cut(s)	417
XapI	RAATTY	1 cut(s)	749
XceI	RCATGY	2 cut(s)	502, 599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802
XmiI	GTMKAC	1 cut(s)	134
Zsp2I	ATGCAT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.