AT3G52390

Deoxyribonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009395
Physical Location & Seq
Reverse (-)
19422988 .. 19425257
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52390.2

Sequence Viewer

Length: 963 bp
ATGGCGTCATTGAAGATGATAGACATAGCCGTTAACTTCACAGATGGGATGTTCAAAGGACTTTACCATGGCAAGAACTGTCATGTTCCGGATATTGCCACTGTCTTGAACCGGGCTTGGTCTGCTGGAGTCGATAGAATCATAGTAACTGGTGGGTCATTGGAAGAATCAAGAGAAGCTCTTGCAATTGCAGAGACTGATGGTAGGCTGTTTTGCACTGTTGGTGTTCATCCAACTAGATGCAATGAGTTTGAAGAGAGTGGTGATCCGGAGAAGCATTACCAGGCTCTTTTTTCATTAGCCAAAGAAGGAATGCAGAAAGGGAAGGTGGTAGCAATTGGTGAATGTGGATTGGATTATGACAGGCTTCAATTTTGCTCAGTTGATATCCAGAAGAAGTATTTTGAGAAGCAATTTGAACTAGCATATGCTACAAAGTTGCCAATGTTCCTACACATGCGAGCAGCTGCTGAAGATTTCTGTGAAATTGTTGAGAGAAACAAGAATAGGTTCACTGGAGGAGTTGCTCATTCATTTACTGGTAGTGCGTCGGACCGCGATAAGCTTCTCTCTTTCGATAAAATGTACCTTGGTGTGAACGGGTGCTCGTTGAAAACAGCTGAGAATCTTGAGGTAATGAAAGGAATACCAGTAGAGAGAATGATGATCGAAACCGACTCTCCATATTGTGATATCAAGAACACACACGCCGGAATCAAGTTTGTAAAGTCGACTTGGCCTTCCAAGAAAAAAGAGAAGTATGATCAAGAGTCCCTTGTCAAAGGCCGTAATGAGCCTTGTTTAGTCAGGCAAGTCCTTGAAGTGGTGGCTGGCTACAAAGGACTTGGCGATCTAAATCAAGTTAGCTCAACCTTGTACCACAACACTTGCAGGGTCTTCTTCCCTCAGGACTTAGATTCTGCTGCAGATGCTCTGCTTTCCGGGCACCACGAGACCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TatD_DNase

Protein Analysis

320

Amino Acids

35.69

Weight (kDa)

5.96

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatD_DNase PF01026 34 - 303 1.3e-49 TatD related DNase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 945
AccI GTMKAC 1 cut(s) 731
AccII CGCG 1 cut(s) 558
AccIII TCCGGA 2 cut(s) 88, 268
AciI CCGC 1 cut(s) 556
AclWI GGATC 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 492
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 587, 878
AfiI CCNNNNNNNGG 1 cut(s) 823
AgsI TTSAA 8 cut(s) 13, 55, 109, 254, 371, 419, 613, 821
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 5 cut(s) 179, 467, 565, 620, 867
AluI AGCT 5 cut(s) 179, 467, 565, 620, 867
Alw21I GWGCWC 1 cut(s) 608
Alw26I GTCTC 2 cut(s) 188, 947
AlwI GGATC 1 cut(s) 260
AlwNI CAGNNNCTG 2 cut(s) 197, 470
Aor13HI TCCGGA 2 cut(s) 88, 268
AoxI GGCC 2 cut(s) 737, 784
ApeKI GCWGC 3 cut(s) 464, 467, 923
Asp700I GAANNNNTTC 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 553
AsuC2I CCSGG 2 cut(s) 113, 943
AsuHPI GGTGA 2 cut(s) 275, 353
AvaII GGWCC 1 cut(s) 553
AxyI CCTNAGG 1 cut(s) 906
BaeGI GKGCMC 1 cut(s) 948
BanI GGYRCC 1 cut(s) 945
BauI CACGAG 1 cut(s) 950
BbsI GAAGAC 1 cut(s) 889
Bbv12I GWGCWC 1 cut(s) 608
BbvI GCAGC 3 cut(s) 454, 476, 910
BccI CCATC 2 cut(s) 38, 194
BceAI ACGGC 2 cut(s) 14, 771
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 2 cut(s) 113, 943
BcoDI GTCTC 2 cut(s) 188, 947
BfaI CTAG 3 cut(s) 237, 422, 961
BfmI CTRYAG 1 cut(s) 924
BisI GCNGC 3 cut(s) 465, 468, 924
BlsI GCNGC 3 cut(s) 466, 469, 925
Bme1390I CCNGG 3 cut(s) 113, 284, 943
Bme18I GGWCC 1 cut(s) 553
BmgT120I GGNCC 1 cut(s) 553
BmiI GGNNCC 1 cut(s) 947
BmrFI CCNGG 3 cut(s) 113, 284, 943
BmsI GCATC 2 cut(s) 230, 919
BpiI GAAGAC 1 cut(s) 889
BpmI CTGGAG 2 cut(s) 147, 537
BpuEI CTTGAG 1 cut(s) 650
BpuMI CCSGG 2 cut(s) 113, 943
BsaBI GATNNNNATC 1 cut(s) 855
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 947
BsaJI CCNNGG 2 cut(s) 67, 589
BsaWI WCCGGW 2 cut(s) 88, 268
BsaXI ACNNNNNCTCC 2 cut(s) 664, 694
Bsc4I CCNNNNNNNGG 1 cut(s) 823
Bse1I ACTGG 4 cut(s) 154, 520, 544, 650
Bse21I CCTNAGG 1 cut(s) 906
Bse3DI GCAATG 1 cut(s) 250
Bse8I GATNNNNATC 1 cut(s) 855
BseAI TCCGGA 2 cut(s) 88, 268
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 67, 589
BseGI GGATG 2 cut(s) 54, 229
BseJI GATNNNNATC 1 cut(s) 855
BseLI CCNNNNNNNGG 1 cut(s) 823
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 3 cut(s) 393, 612, 920
BseNI ACTGG 4 cut(s) 154, 520, 544, 650
BseRI GAGGAG 1 cut(s) 534
BseSI GKGCMC 1 cut(s) 948
BseXI GCAGC 3 cut(s) 454, 476, 910
Bsh1236I CGCG 1 cut(s) 558
BshFI GGCC 2 cut(s) 739, 786
BshNI GGYRCC 1 cut(s) 945
BsiHKAI GWGCWC 1 cut(s) 608
BsiSI CCGG 5 cut(s) 89, 112, 269, 711, 942
BslFI GGGAC 1 cut(s) 757
BslI CCNNNNNNNGG 1 cut(s) 823
BsmAI GTCTC 2 cut(s) 188, 947
BsmFI GGGAC 1 cut(s) 757
BsmI GAATGC 1 cut(s) 318
BsnI GGCC 2 cut(s) 739, 786
Bso31I GGTCTC 1 cut(s) 947
Bsp1286I GDGCHC 2 cut(s) 608, 948
Bsp13I TCCGGA 2 cut(s) 88, 268
Bsp143I GATC 4 cut(s) 265, 666, 763, 850
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 1 cut(s) 556
BspANI GGCC 2 cut(s) 739, 786
BspCNI CTCAG 3 cut(s) 392, 613, 919
BspEI TCCGGA 2 cut(s) 88, 268
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 947
BspMAI CTGCAG 1 cut(s) 928
BspPI GGATC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 945
BspTNI GGTCTC 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 250
BsrI ACTGG 4 cut(s) 154, 520, 544, 650
BssECI CCNNGG 2 cut(s) 67, 589
BssMI GATC 4 cut(s) 265, 666, 763, 850
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 950
BssT1I CCWWGG 2 cut(s) 67, 589
Bst2BI CACGAG 1 cut(s) 950
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 3 cut(s) 80, 103, 220
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 462, 832
BstDEI CTNAG 4 cut(s) 379, 621, 906, 913
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 2 cut(s) 54, 229
BstFNI CGCG 1 cut(s) 558
BstKTI GATC 4 cut(s) 268, 669, 766, 853
BstMAI GTCTC 2 cut(s) 188, 947
BstMBI GATC 4 cut(s) 265, 666, 763, 850
BstMWI GCNNNNNNNGC 3 cut(s) 122, 929, 943
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 3 cut(s) 111, 282, 941
BstSFI CTRYAG 1 cut(s) 924
BstSLI GKGCMC 1 cut(s) 948
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 3 cut(s) 454, 476, 910
BstV2I GAAGAC 1 cut(s) 889
Bsu36I CCTNAGG 1 cut(s) 906
BsuRI GGCC 2 cut(s) 739, 786
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 54, 229
BtsIMutI CAGTG 3 cut(s) 99, 216, 513
Cac8I GCNNGC 2 cut(s) 462, 832
CaiI CAGNNNCTG 2 cut(s) 197, 470
Cfr13I GGNCC 1 cut(s) 553
CpoI CGGWCCG 1 cut(s) 553
CseI GACGC 1 cut(s) 537
Csp6I GTAC 2 cut(s) 586, 877
CspCI CAANNNNNGTGG 2 cut(s) 869, 904
CspI CGGWCCG 1 cut(s) 553
CviAII CATG 3 cut(s) 68, 83, 457
CviQI GTAC 2 cut(s) 586, 877
DdeI CTNAG 4 cut(s) 379, 621, 906, 913
DpnI GATC 4 cut(s) 267, 668, 765, 852
DpnII GATC 4 cut(s) 265, 666, 763, 850
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 2 cut(s) 67, 589
Eco31I GGTCTC 1 cut(s) 947
Eco32I GATATC 2 cut(s) 388, 694
Eco47I GGWCC 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 492
Eco81I CCTNAGG 1 cut(s) 906
EcoRII CCWGG 1 cut(s) 282
EcoRV GATATC 2 cut(s) 388, 694
EcoT14I CCWWGG 2 cut(s) 67, 589
ErhI CCWWGG 2 cut(s) 67, 589
FaeI CATG 3 cut(s) 71, 86, 460
FalI AAGNNNNNCTT 2 cut(s) 759, 791
FaqI GGGAC 1 cut(s) 757
FatI CATG 3 cut(s) 67, 82, 456
FauNDI CATATG 1 cut(s) 427
FbaI TGATCA 1 cut(s) 763
FblI GTMKAC 1 cut(s) 731
Fnu4HI GCNGC 3 cut(s) 465, 468, 924
FokI GGATG 2 cut(s) 61, 216
Fsp4HI GCNGC 3 cut(s) 465, 468, 924
FspBI CTAG 3 cut(s) 237, 422, 961
GluI GCNGC 3 cut(s) 465, 468, 924
GsuI CTGGAG 2 cut(s) 147, 537
HaeIII GGCC 2 cut(s) 739, 786
HapII CCGG 5 cut(s) 89, 112, 269, 711, 942
HgaI GACGC 1 cut(s) 537
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 71, 86, 460
HincII GTYRAC 2 cut(s) 34, 732
HindII GTYRAC 2 cut(s) 34, 732
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 8 cut(s) 129, 138, 167, 625, 677, 714, 770, 917
HpaI GTTAAC 1 cut(s) 34
HpaII CCGG 5 cut(s) 89, 112, 269, 711, 942
HphI GGTGA 2 cut(s) 275, 353
Hpy166II GTNNAC 4 cut(s) 34, 513, 598, 732
Hpy188I TCNGA 1 cut(s) 553
Hpy188III TCNNGA 9 cut(s) 89, 106, 171, 269, 391, 629, 697, 767, 908
Hpy8I GTNNAC 4 cut(s) 34, 513, 598, 732
Hpy99I CGWCG 1 cut(s) 553
HpyAV CCTTC 3 cut(s) 302, 319, 750
HpyCH4III ACNGT 3 cut(s) 80, 103, 220
HpyCH4V TGCA 7 cut(s) 185, 191, 216, 243, 316, 891, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 929, 943
HpyF3I CTNAG 4 cut(s) 379, 621, 906, 913
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 71, 86, 460
Kpn2I TCCGGA 2 cut(s) 88, 268
Ksp22I TGATCA 1 cut(s) 763
KspAI GTTAAC 1 cut(s) 34
Kzo9I GATC 4 cut(s) 265, 666, 763, 850
Lsp1109I GCAGC 3 cut(s) 454, 476, 910
LweI GCATC 2 cut(s) 230, 919
MaeI CTAG 3 cut(s) 237, 422, 961
MaeIII GTNAC 1 cut(s) 145
MalI GATC 4 cut(s) 267, 668, 765, 852
MboI GATC 4 cut(s) 265, 666, 763, 850
MboII GAAGA 7 cut(s) 25, 176, 266, 406, 485, 889, 892
MfeI CAATTG 2 cut(s) 186, 336
MhlI GDGCHC 2 cut(s) 608, 948
MluCI AATT 5 cut(s) 186, 336, 371, 413, 486
MlyI GAGTC 3 cut(s) 138, 671, 779
MmeI TCCRAC 2 cut(s) 257, 531
MnlI CCTC 3 cut(s) 512, 625, 915
MroI TCCGGA 2 cut(s) 88, 268
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 1 cut(s) 33
MspA1I CMGCKG 2 cut(s) 467, 620
MspI CCGG 5 cut(s) 89, 112, 269, 711, 942
MspR9I CCNGG 3 cut(s) 113, 284, 943
MunI CAATTG 2 cut(s) 186, 336
Mva1269I GAATGC 1 cut(s) 318
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 3 cut(s) 122, 929, 943
NciI CCSGG 2 cut(s) 113, 943
NcoI CCATGG 1 cut(s) 67
NdeI CATATG 1 cut(s) 427
NdeII GATC 4 cut(s) 265, 666, 763, 850
NlaIII CATG 3 cut(s) 71, 86, 460
NlaIV GGNNCC 1 cut(s) 947
NspI RCATGY 1 cut(s) 460
PctI GAATGC 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 5 cut(s) 138, 167, 625, 714, 917
PkrI GCNGC 3 cut(s) 466, 469, 925
PleI GAGTC 3 cut(s) 137, 671, 778
PpsI GAGTC 3 cut(s) 137, 671, 778
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 947
PspPI GGNCC 1 cut(s) 553
PstI CTGCAG 1 cut(s) 928
PstNI CAGNNNCTG 2 cut(s) 197, 470
PvuII CAGCTG 2 cut(s) 467, 620
RsaI GTAC 2 cut(s) 587, 878
RsaNI GTAC 2 cut(s) 586, 877
Rsr2I CGGWCCG 1 cut(s) 553
RsrII CGGWCCG 1 cut(s) 553
SalI GTCGAC 1 cut(s) 730
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 3 cut(s) 465, 468, 924
Sau3AI GATC 4 cut(s) 265, 666, 763, 850
Sau96I GGNCC 1 cut(s) 553
SchI GAGTC 3 cut(s) 138, 671, 779
ScrFI CCNGG 3 cut(s) 113, 284, 943
SduI GDGCHC 2 cut(s) 608, 948
SfaNI GCATC 2 cut(s) 230, 919
SfcI CTRYAG 1 cut(s) 924
SinI GGWCC 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 5 cut(s) 186, 336, 371, 413, 486
SsiI CCGC 1 cut(s) 556
SspMI CTAG 3 cut(s) 237, 422, 961
StyD4I CCNGG 3 cut(s) 111, 282, 941
StyI CCWWGG 2 cut(s) 67, 589
TaaI ACNGT 3 cut(s) 80, 103, 220
TaqI TCGA 4 cut(s) 132, 576, 669, 731
TasI AATT 5 cut(s) 186, 336, 371, 413, 486
TfiI GAWTC 5 cut(s) 138, 167, 625, 714, 917
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 3 cut(s) 106, 223, 520
TseI GCWGC 3 cut(s) 464, 467, 923
TspDTI ATGAA 4 cut(s) 218, 285, 522, 653
TspRI CASTG 3 cut(s) 106, 223, 520
VpaK11BI GGWCC 1 cut(s) 553
XceI RCATGY 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 731
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 3 cut(s) 237, 422, 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.