Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009395

Physical Location & Seq

Genomic Coordinates Forward (+)

3543054 .. 3545577

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03660.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTTCTGCATATGCGTGCAGCTGCTCCAGATTTCTGTGAAATTGTAGAGAGAAATAGGGGCAGATTCAGCGCTGGGGTGGCCCACTCATTTACTGGTTGTGCAGAAGATCGTGATAAACTTCTTTCCATCAACAACATGTATATAGGAGTAAATGGTTGCTCTCTGAAGACAACTGAGAATCTCGACGTTGTGAGGGACATTCCTATTGAGAGGATGATGATTGAGACAGACTCTCCATATTGTGGAATCAAGAACACAAGTGCTGGGATTAAATTTGTGAAGTCCATTTGGCCTTCGAAGAAGAAAGACAAGTATGATCAAGAGTGCATTGTTAAAGACCGCAATGAACCGTGTTTGGTTCGGCAAGTTCTTGAGGTGGTAGCTGGTTGTAAAGGTATCAATGACATAGGTCAGCTGAGCCGGACATTGTATCACAACACTTGCAGGCTTTTCTTTCCTCAGGATTTGGATTCTGCAGCAGATTCTCTACTTGATGGTCATGACCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TatD_DNase

Protein Analysis

172

Amino Acids

19.2

Weight (kDa)

6.08

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52390 AT3G52390
fragaria_vesca	FvH4_6g20480 FvH4_6g20480
malus_domestica	MD12G1041900.v1.1
prunus_persica	Prupe.7G093300_v2.0.a1 Prupe.7G093300_v2.0.a1 Prupe.7G093300_v2.0.a1 Prupe.7G093300_v2.0.a1 Prupe.7G093300_v2.0.a1 Prupe.7G093300_v2.0.a1
pyrus_communis	pycom12g03660
rosa_chinensis	RchiOBHm_Chr3g0476361
rosa_laevigata	RLG00000023777
rosa_roxburghii	Rroxscaffold_6G00405370
rosa_rugosa	Rorug03G0153600 Rorug03G0153700
rosa_samantha	Rh3AG204900 Rh3BG236500 Rh3CG231000 Rh3DG230800
rosa_wichuraiana	Rw3G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	245
AciI	CCGC	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	188
AfeI	AGCGCT	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	245
AflIII	ACRYGT	1 cut(s)	138
AluBI	AGCT	3 cut(s)	23, 386, 418
AluI	AGCT	3 cut(s)	23, 386, 418
Alw26I	GTCTC	1 cut(s)	221
Aor51HI	AGCGCT	1 cut(s)	73
AoxI	GGCC	2 cut(s)	81, 293
ApeKI	GCWGC	3 cut(s)	20, 23, 479
ApoI	RAATTY	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	82
AsuII	TTCGAA	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	3 cut(s)	10, 32, 491
BccI	CCATC	2 cut(s)	137, 491
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	3 cut(s)	21, 24, 480
BlpI	GCTNAGC	1 cut(s)	419
BlsI	GCNGC	3 cut(s)	22, 25, 481
BmgT120I	GGNCC	1 cut(s)	82
BoxI	GACNNNNGTC	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	176
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpmI	CTGGAG	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	419
Bpu14I	TTCGAA	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	100
Bse21I	CCTNAGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	3 cut(s)	168, 410, 476
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	10, 32, 491
BseYI	CCCAGC	2 cut(s)	74, 266
BsgI	GTGCAG	2 cut(s)	39, 123
BshFI	GGCC	2 cut(s)	83, 295
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	83, 295
Bsp119I	TTCGAA	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	109, 319
Bsp1720I	GCTNAGC	1 cut(s)	419
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	83, 295
BspCNI	CTCAG	3 cut(s)	169, 411, 475
BspHI	TCATGA	1 cut(s)	502
BspMAI	CTGCAG	1 cut(s)	481
BspT104I	TTCGAA	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	109, 319
Bst4CI	ACNGT	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	18, 449
BstDEI	CTNAG	4 cut(s)	177, 419, 462, 510
BstF5I	GGATG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	112, 322
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	2 cut(s)	109, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 80
BstNSI	RCATGY	1 cut(s)	142
BstPAI	GACNNNNGTC	1 cut(s)	411
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	10, 32, 491
BstV2I	GAAGAC	1 cut(s)	176
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	83, 295
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	18, 449
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	2 cut(s)	139, 503
CviJI	RGCY	7 cut(s)	23, 83, 295, 386, 418, 423, 451
CviKI_1	RGCY	7 cut(s)	23, 83, 295, 386, 418, 423, 451
DdeI	CTNAG	4 cut(s)	177, 419, 462, 510
DpnI	GATC	2 cut(s)	111, 321
DpnII	GATC	2 cut(s)	109, 319
Eco47III	AGCGCT	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	462
FaeI	CATG	2 cut(s)	142, 506
FaiI	YATR	9 cut(s)	12, 14, 140, 144, 146, 241, 318, 410, 504
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	138, 502
FauNDI	CATATG	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	21, 24, 480
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	3 cut(s)	21, 24, 480
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	3 cut(s)	21, 24, 480
GsaI	CCCAGC	2 cut(s)	78, 270
GsuI	CTGGAG	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	83, 295
HapII	CCGG	1 cut(s)	424
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	142, 506
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	6 cut(s)	66, 181, 233, 249, 473, 485
HpaII	CCGG	1 cut(s)	424
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	8 cut(s)	29, 113, 185, 253, 323, 374, 464, 503
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	6 cut(s)	10, 20, 104, 330, 447, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 80
HpyF3I	CTNAG	4 cut(s)	177, 419, 462, 510
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	142, 506
HspAI	GCGC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	109, 319
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	8 cut(s)	42, 60, 81, 252, 372, 433, 437, 449
Lsp1109I	GCAGC	3 cut(s)	10, 32, 491
MaeII	ACGT	1 cut(s)	189
MalI	GATC	2 cut(s)	111, 321
MboI	GATC	2 cut(s)	109, 319
MboII	GAAGA	4 cut(s)	119, 181, 313, 316
MluCI	AATT	2 cut(s)	42, 275
MlyI	GAGTC	1 cut(s)	227
MnlI	CCTC	4 cut(s)	189, 207, 370, 471
MseI	TTAA	2 cut(s)	273, 336
MslI	CAYNNNNRTG	1 cut(s)	15
MspA1I	CMGCKG	2 cut(s)	23, 418
MspI	CCGG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	69, 80
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	2 cut(s)	109, 319
NlaIII	CATG	2 cut(s)	142, 506
NspI	RCATGY	1 cut(s)	142
NspV	TTCGAA	1 cut(s)	299
PagI	TCATGA	1 cut(s)	502
PciI	ACATGT	1 cut(s)	138
PfeI	GAWTC	5 cut(s)	66, 181, 249, 473, 485
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	22, 25, 481
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PscI	ACATGT	1 cut(s)	138
PshAI	GACNNNNGTC	1 cut(s)	411
PspFI	CCCAGC	2 cut(s)	74, 266
PspPI	GGNCC	1 cut(s)	82
PstI	CTGCAG	1 cut(s)	481
PvuII	CAGCTG	2 cut(s)	23, 418
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	273, 336
SatI	GCNGC	3 cut(s)	21, 24, 480
Sau3AI	GATC	2 cut(s)	109, 319
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	227
SetI	ASST	7 cut(s)	25, 192, 381, 388, 400, 415, 420
SfcI	CTRYAG	1 cut(s)	477
SfuI	TTCGAA	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	42, 275
SsiI	CCGC	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	186, 299
TasI	AATT	2 cut(s)	42, 275
TfiI	GAWTC	5 cut(s)	66, 181, 249, 473, 485
Tru1I	TTAA	2 cut(s)	273, 336
Tru9I	TTAA	2 cut(s)	273, 336
TseI	GCWGC	3 cut(s)	20, 23, 479
TspDTI	ATGAA	1 cut(s)	363
Van91I	CCANNNNNTGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.