AT3G52440

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016059
Physical Location & Seq
Forward (+)
19435122 .. 19436299
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52440.2

Sequence Viewer

Length: 744 bp
ATGGAGAGAGCAGAGGCCTTGACATCATCGTTTATATGGCGGCCAAACGCAAACGCAAACGCGGAGATCACGCCGAGTTGTCCAAGATGTGGATCCTCTAACACAAAGTTCTGTTACTACAACAACTATAGCCTCACTCAGCCTCGCTACTTCTGCAAAGGCTGCCGCAGATATTGGACCAAAGGTGGTTCCCTCCGCAATGTTCCTGTAGGCGGTGGCTGTCGAAAATCCCGCCGCCCCAAATCATCTTCTGGTAACAATACTAAAACTAGCCTAACCGCTAATTCTGGCAACCCCGGTGGTGGTTCACCAAGCATCGATCTTGCTCTTGTTTACGCCAATTTCTTGAATCCAAAGCCTGACGAATCTATACTACAAGAAAATTGCGACTTAGCCACTACGGATTTTTTGGTAGATAATCCTACCGGCACTTCCATGGACCCTTCATGGAGTATGGACATCAATGATGGTCATCATGATCATTATATTAATCCGGTGGAACACATTGTGGAGGAATGTGGTTATAATGGCTTGCCTCCATTTCCTGGTGAAGAGCTTCTCTCTTTAGACACTAATGGTGTTTGGTCTGATGCTTTGTTGATTGGTCATAACCATGTAGACGTTGGCGTGACTCCGGTTCAGGCTGTACACGAACCGGTGGTTCATTTCGCTGACGAATCCAATGATTCCACCAATCTCTTGTTTGGAAGTTGGAGCCCTTTTGATTTCACTGCCGATGGATGA

Protein Analysis

247

Amino Acids

26.94

Weight (kDa)

5.05

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 45 - 98 1.2e-31 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52440 AT3G52440
fragaria_vesca FvH4_6g20401
malus_domestica MD12G1041000.v1.1 MD14G1040400.v1.1
prunus_persica Prupe.7G093900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0476121
rosa_laevigata RLG00000023789
rosa_multiflora Rmu_sc0000114.1_g000027
rosa_roxburghii Rroxscaffold_6G00405460
rosa_rugosa Rorug03G0152900
rosa_samantha Rh3BG234200 Rh3CG229600 Rh3DG229600
rosa_wichuraiana Rw3G018540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AccB7I CCANNNNNTGG 2 cut(s) 89, 545
AccI GTMKAC 1 cut(s) 618
AccII CGCG 1 cut(s) 62
AciI CCGC 8 cut(s) 40, 62, 166, 196, 213, 232, 235, 279
AclWI GGATC 2 cut(s) 87, 100
AcoI YGGCCR 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 508
AfaI GTAC 1 cut(s) 648
AfiI CCNNNNNNNGG 4 cut(s) 89, 212, 302, 545
AgeI ACCGGT 1 cut(s) 655
AgsI TTSAA 1 cut(s) 349
AjnI CCWGG 1 cut(s) 544
AluBI AGCT 1 cut(s) 556
AluI AGCT 1 cut(s) 556
AlwI GGATC 2 cut(s) 87, 100
AoxI GGCC 2 cut(s) 15, 41
ApeKI GCWGC 1 cut(s) 162
AseI ATTAAT 1 cut(s) 489
AsiGI ACCGGT 1 cut(s) 655
Asp700I GAANNNNTTC 1 cut(s) 555
AspS9I GGNCC 2 cut(s) 177, 439
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 2 cut(s) 300, 560
AvaII GGWCC 2 cut(s) 177, 439
BamHI GGATCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 719
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 461, 731
BciT130I CCWGG 1 cut(s) 546
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 1 cut(s) 297
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 2 cut(s) 127, 207
BisI GCNGC 4 cut(s) 41, 163, 166, 235
BlsI GCNGC 4 cut(s) 42, 164, 167, 236
Bme1390I CCNGG 2 cut(s) 297, 546
Bme18I GGWCC 2 cut(s) 177, 439
BmgT120I GGNCC 2 cut(s) 177, 439
BmiI GGNNCC 4 cut(s) 94, 190, 441, 716
BmrFI CCNGG 2 cut(s) 297, 546
BmsI GCATC 2 cut(s) 324, 580
BplI GAGNNNNNCTC 2 cut(s) 545, 577
BpuMI CCSGG 1 cut(s) 297
Bsa29I ATCGAT 1 cut(s) 318
BsaBI GATNNNNATC 2 cut(s) 91, 471
BsaJI CCNNGG 2 cut(s) 295, 435
BsaWI WCCGGW 3 cut(s) 493, 634, 655
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 212, 302, 545
Bse118I RCCGGY 2 cut(s) 425, 655
Bse3DI GCAATG 1 cut(s) 205
Bse8I GATNNNNATC 2 cut(s) 91, 471
BseBI CCWGG 1 cut(s) 546
BseCI ATCGAT 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 295, 435
BseJI GATNNNNATC 2 cut(s) 91, 471
BseLI CCNNNNNNNGG 4 cut(s) 89, 212, 302, 545
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 2 cut(s) 17, 43
BshTI ACCGGT 1 cut(s) 655
BshVI ATCGAT 1 cut(s) 318
BsiSI CCGG 5 cut(s) 297, 426, 494, 635, 656
BslI CCNNNNNNNGG 4 cut(s) 89, 212, 302, 545
BsnI GGCC 2 cut(s) 17, 43
Bsp1286I GDGCHC 1 cut(s) 719
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 4 cut(s) 66, 92, 319, 478
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 8 cut(s) 40, 62, 166, 196, 213, 232, 235, 279
BspANI GGCC 2 cut(s) 17, 43
BspCNI CTCAG 1 cut(s) 151
BspDI ATCGAT 1 cut(s) 318
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 4 cut(s) 94, 190, 441, 716
BspPI GGATC 2 cut(s) 87, 100
BspQI GCTCTTC 1 cut(s) 546
BsrDI GCAATG 1 cut(s) 205
BsrFI RCCGGY 2 cut(s) 425, 655
BsrGI TGTACA 1 cut(s) 646
BssAI RCCGGY 2 cut(s) 425, 655
BssECI CCNNGG 2 cut(s) 295, 435
BssMI GATC 4 cut(s) 66, 92, 319, 478
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 546
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 646
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 2 cut(s) 138, 391
BstDSI CCRYGG 1 cut(s) 435
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 4 cut(s) 69, 95, 322, 481
BstMBI GATC 4 cut(s) 66, 92, 319, 478
BstMWI GCNNNNNNNGC 2 cut(s) 153, 162
BstNI CCWGG 1 cut(s) 546
BstSCI CCNGG 2 cut(s) 295, 544
BstSFI CTRYAG 2 cut(s) 127, 207
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
Bsu15I ATCGAT 1 cut(s) 318
BsuRI GGCC 2 cut(s) 17, 43
BsuTUI ATCGAT 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 1 cut(s) 729
Cac8I GCNNGC 1 cut(s) 533
CciI TCATGA 1 cut(s) 475
Cfr10I RCCGGY 2 cut(s) 425, 655
Cfr13I GGNCC 2 cut(s) 177, 439
ClaI ATCGAT 1 cut(s) 318
Csp6I GTAC 1 cut(s) 647
CspAI ACCGGT 1 cut(s) 655
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 4 cut(s) 436, 447, 476, 614
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 2 cut(s) 138, 391
DpnI GATC 4 cut(s) 68, 94, 321, 480
DpnII GATC 4 cut(s) 66, 92, 319, 478
DraIII CACNNNGTG 1 cut(s) 508
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Eco130I CCWWGG 1 cut(s) 435
Eco147I AGGCCT 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 719
Eco47I GGWCC 2 cut(s) 177, 439
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 719
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 4 cut(s) 439, 450, 479, 617
FatI CATG 4 cut(s) 435, 446, 475, 613
FauI CCCGC 1 cut(s) 239
FbaI TGATCA 1 cut(s) 478
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 4 cut(s) 41, 163, 166, 235
FriOI GRGCYC 1 cut(s) 719
Fsp4HI GCNGC 4 cut(s) 41, 163, 166, 235
FspBI CTAG 1 cut(s) 270
GluI GCNGC 4 cut(s) 41, 163, 166, 235
HaeIII GGCC 2 cut(s) 17, 43
HapII CCGG 5 cut(s) 297, 426, 494, 635, 656
Hin1II CATG 4 cut(s) 439, 450, 479, 617
HinfI GANTC 5 cut(s) 349, 365, 631, 677, 686
HpaII CCGG 5 cut(s) 297, 426, 494, 635, 656
HphI GGTGA 2 cut(s) 300, 560
Hpy166II GTNNAC 4 cut(s) 308, 334, 619, 649
Hpy188I TCNGA 1 cut(s) 589
Hpy188III TCNNGA 2 cut(s) 346, 476
Hpy8I GTNNAC 4 cut(s) 308, 334, 619, 649
HpyAV CCTTC 1 cut(s) 453
HpyCH4IV ACGT 1 cut(s) 621
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 153, 162
HpyF3I CTNAG 2 cut(s) 138, 391
HpySE526I ACGT 1 cut(s) 621
Hsp92II CATG 4 cut(s) 439, 450, 479, 617
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 4 cut(s) 66, 92, 319, 478
LguI GCTCTTC 1 cut(s) 546
LmnI GCTCC 1 cut(s) 714
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 2 cut(s) 324, 580
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 621
MaeIII GTNAC 3 cut(s) 113, 254, 628
MalI GATC 4 cut(s) 68, 94, 321, 480
MboI GATC 4 cut(s) 66, 92, 319, 478
MboII GAAGA 2 cut(s) 240, 563
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 719
MluCI AATT 3 cut(s) 283, 340, 382
MlyI GAGTC 1 cut(s) 625
MmeI TCCRAC 1 cut(s) 692
MnlI CCTC 7 cut(s) 7, 106, 143, 153, 203, 505, 546
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 2 cut(s) 434, 612
MspI CCGG 5 cut(s) 297, 426, 494, 635, 656
MspR9I CCNGG 2 cut(s) 297, 546
MvaI CCWGG 1 cut(s) 546
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 153, 162
NciI CCSGG 1 cut(s) 297
NcoI CCATGG 1 cut(s) 435
NdeII GATC 4 cut(s) 66, 92, 319, 478
NlaIII CATG 4 cut(s) 439, 450, 479, 617
NlaIV GGNNCC 4 cut(s) 94, 190, 441, 716
NmeAIII GCCGAG 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 628
PagI TCATGA 1 cut(s) 475
PceI AGGCCT 1 cut(s) 17
PciSI GCTCTTC 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 4 cut(s) 349, 365, 677, 686
PflMI CCANNNNNTGG 2 cut(s) 89, 545
PinAI ACCGGT 1 cut(s) 655
PkrI GCNGC 4 cut(s) 42, 164, 167, 236
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PshBI ATTAAT 1 cut(s) 489
PsiI TTATAA 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 4 cut(s) 94, 190, 441, 716
PspPI GGNCC 2 cut(s) 177, 439
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
RseI CAYNNNNRTG 2 cut(s) 434, 612
SapI GCTCTTC 1 cut(s) 546
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 4 cut(s) 41, 163, 166, 235
Sau3AI GATC 4 cut(s) 66, 92, 319, 478
Sau96I GGNCC 2 cut(s) 177, 439
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 2 cut(s) 297, 546
SduI GDGCHC 1 cut(s) 719
SetI ASST 3 cut(s) 187, 558, 624
SfaNI GCATC 2 cut(s) 324, 580
SfcI CTRYAG 2 cut(s) 127, 207
SinI GGWCC 2 cut(s) 177, 439
SmiMI CAYNNNNRTG 2 cut(s) 434, 612
Sse9I AATT 3 cut(s) 283, 340, 382
SseBI AGGCCT 1 cut(s) 17
SsiI CCGC 8 cut(s) 40, 62, 166, 196, 213, 232, 235, 279
SspMI CTAG 1 cut(s) 270
StuI AGGCCT 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 295, 544
StyI CCWWGG 1 cut(s) 435
TaiI ACGT 1 cut(s) 624
TaqI TCGA 2 cut(s) 223, 318
TasI AATT 3 cut(s) 283, 340, 382
TatI WGTACW 1 cut(s) 646
TauI GCSGC 3 cut(s) 43, 168, 237
TfiI GAWTC 4 cut(s) 349, 365, 677, 686
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 736
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 2 cut(s) 435, 653
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 1 cut(s) 736
Van91I CCANNNNNTGG 2 cut(s) 89, 545
VpaK11BI GGWCC 2 cut(s) 177, 439
VspI ATTAAT 1 cut(s) 489
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 618
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.