RLG00000023789

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016059
Physical Location & Seq
Forward (+)
28202440 .. 28203345
906 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023789

Sequence Viewer

Length: 906 bp
ATGGAGAGATCTGGATGGAAGCCAAACGATGATCATCATCACATATGCCCGAATTGCCCCCGGTGCGGTTGTTCTAACACCAAGTTTTGTTACTATAACAACTACAGTTTGACTCAGCCTAGGTACTTCTGCAAGGGCTGTAGGAGATACTGGACCAAAGGCGGGTCCCTCAGGAACGTCCCCGTCGGAGGCGGCTGCCGGAAGAACAGAAGAGGGTCAAGGTCGTTAAGGCTATCCACCAACACCACCACGGCTACCGGGAGTAATAATGTGAATACTGGCACAATTGGACATAATTCATATGGAATTAGCAGTTCATTGGATCCAGATTCTACTAGCTCCGGAGAGTCCAATCAGGATGCGCCACCACGTATTGATCTCGCAGTCGTTTATGCGAACTTCTTGAATCAGAAGCCAGTTTCCAGGAGTTCAGGATCTGATCAGTTGCCAGAAATGCCTAGGGAATTCAACCCGGGTTTAGATTTTTCAAGCTGCATAGCAAACATGAACATCAATGCAGGCTCAGGCTCAAGTATTCAGTTGATGGAAGAAAATGGTCTTAATGGATCAATAGGATGTCACAGTACTCTATCAGAAAATTGTGGGACCATCAATGACCACATGTACTTTGGTGGGTTAGACCCATTAATCGATCATCATCAGAATCAAGATCATAGCAGTGATCTATTACAATATGCAAGTAGTACTCATGAATCAACTGATCATTTTGGGTTGCCACCATTGCCAGACCAAGAGGTATTGTGGTCTAGTTCTCACGATCAAATGATGGCTAGTCCTATCATGCAACCTACCCCTGTGCTCGGATCAGAAGCTCATGATCCAAACCTGTTAAATTGGAGCCCCGTATTCGATTTACCATGTAATGGAACTTTCTCCAGGACATGA

Protein Analysis

302

Amino Acids

32.95

Weight (kDa)

5.97

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 18 - 71 2.8e-29 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52440 AT3G52440
fragaria_vesca FvH4_6g20401
malus_domestica MD12G1041000.v1.1 MD14G1040400.v1.1
prunus_persica Prupe.7G093900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0476121
rosa_laevigata RLG00000023789
rosa_multiflora Rmu_sc0000114.1_g000027
rosa_roxburghii Rroxscaffold_6G00405460
rosa_rugosa Rorug03G0152900
rosa_samantha Rh3BG234200 Rh3CG229600 Rh3DG229600
rosa_wichuraiana Rw3G018540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 884
AccIII TCCGGA 1 cut(s) 341
AciI CCGC 3 cut(s) 66, 162, 192
AclWI GGATC 6 cut(s) 317, 330, 442, 574, 832, 833
AcsI RAATTY 1 cut(s) 464
AfaI GTAC 4 cut(s) 125, 586, 626, 706
AfiI CCNNNNNNNGG 5 cut(s) 65, 162, 188, 821, 884
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 3 cut(s) 406, 469, 489
AjnI CCWGG 2 cut(s) 422, 896
AluBI AGCT 3 cut(s) 339, 492, 833
AluI AGCT 3 cut(s) 339, 492, 833
Alw21I GWGCWC 1 cut(s) 822
AlwI GGATC 6 cut(s) 317, 330, 442, 574, 832, 833
AlwNI CAGNNNCTG 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 472
Aor13HI TCCGGA 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 195, 492
ApoI RAATTY 1 cut(s) 464
AseI ATTAAT 1 cut(s) 647
AspA2I CCTAGG 2 cut(s) 119, 458
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 3 cut(s) 153, 165, 606
AsuC2I CCSGG 4 cut(s) 61, 259, 473, 474
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 3 cut(s) 153, 165, 606
AvrII CCTAGG 2 cut(s) 119, 458
AxyI CCTNAGG 1 cut(s) 170
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 863
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 2 cut(s) 182, 479
BccI CCATC 4 cut(s) 9, 538, 617, 781
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 2 cut(s) 424, 898
BclI TGATCA 3 cut(s) 31, 439, 721
BcnI CCSGG 4 cut(s) 61, 259, 473, 474
BfaI CTAG 5 cut(s) 120, 336, 459, 768, 792
BfmI CTRYAG 2 cut(s) 103, 139
BglII AGATCT 1 cut(s) 8
BisI GCNGC 3 cut(s) 193, 196, 493
BlnI CCTAGG 2 cut(s) 119, 458
BlsI GCNGC 3 cut(s) 194, 197, 494
BmcAI AGTACT 2 cut(s) 586, 706
Bme1390I CCNGG 6 cut(s) 61, 259, 424, 473, 474, 898
Bme18I GGWCC 3 cut(s) 153, 165, 606
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 3 cut(s) 153, 165, 606
BmiI GGNNCC 5 cut(s) 166, 167, 324, 607, 860
BmrFI CCNGG 6 cut(s) 61, 259, 424, 473, 474, 898
BmsI GCATC 1 cut(s) 349
BpmI CTGGAG 1 cut(s) 880
Bpu10I CCTNAGC 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 4 cut(s) 61, 259, 473, 474
Bsa29I ATCGAT 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 371
BsaBI GATNNNNATC 3 cut(s) 33, 36, 657
BsaJI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BsaWI WCCGGW 1 cut(s) 341
Bsc4I CCNNNNNNNGG 5 cut(s) 65, 162, 188, 821, 884
Bse1I ACTGG 3 cut(s) 155, 283, 416
Bse21I CCTNAGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 740
Bse8I GATNNNNATC 3 cut(s) 33, 36, 657
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 2 cut(s) 424, 898
BseCI ATCGAT 1 cut(s) 651
BseDI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BseGI GGATG 3 cut(s) 20, 364, 581
BseJI GATNNNNATC 3 cut(s) 33, 36, 657
BseLI CCNNNNNNNGG 5 cut(s) 65, 162, 188, 821, 884
BseMI GCAATG 1 cut(s) 740
BseMII CTCAG 3 cut(s) 128, 184, 537
BseNI ACTGG 3 cut(s) 155, 283, 416
BseXI GCAGC 2 cut(s) 182, 479
BshVI ATCGAT 1 cut(s) 651
BsiHKAI GWGCWC 1 cut(s) 822
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 5 cut(s) 61, 199, 258, 342, 473
BslFI GGGAC 3 cut(s) 151, 164, 619
BslI CCNNNNNNNGG 5 cut(s) 65, 162, 188, 821, 884
BsmFI GGGAC 3 cut(s) 151, 164, 619
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 2 cut(s) 822, 863
Bsp13I TCCGGA 1 cut(s) 341
BspACI CCGC 3 cut(s) 66, 162, 192
BspCNI CTCAG 3 cut(s) 127, 183, 536
BspDI ATCGAT 1 cut(s) 651
BspEI TCCGGA 1 cut(s) 341
BspHI TCATGA 2 cut(s) 709, 835
BspLI GGNNCC 5 cut(s) 166, 167, 324, 607, 860
BspPI GGATC 6 cut(s) 317, 330, 442, 574, 832, 833
BsrDI GCAATG 1 cut(s) 740
BsrI ACTGG 3 cut(s) 155, 283, 416
BssECI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BssT1I CCWWGG 2 cut(s) 119, 458
Bst2UI CCWGG 2 cut(s) 424, 898
Bst4CI ACNGT 2 cut(s) 107, 584
Bst6I CTCTTC 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 3 cut(s) 114, 170, 523
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 3 cut(s) 20, 364, 581
BstHHI GCGC 1 cut(s) 364
BstMWI GCNNNNNNNGC 4 cut(s) 54, 63, 454, 742
BstNI CCWGG 2 cut(s) 424, 898
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 6 cut(s) 59, 257, 422, 471, 472, 896
BstSFI CTRYAG 2 cut(s) 103, 139
BstV1I GCAGC 2 cut(s) 182, 479
BstX2I RGATCY 3 cut(s) 8, 322, 434
BstYI RGATCY 3 cut(s) 8, 322, 434
Bsu15I ATCGAT 1 cut(s) 651
Bsu36I CCTNAGG 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 651
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 3 cut(s) 20, 364, 581
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 1 cut(s) 685
Cac8I GCNNGC 1 cut(s) 520
CaiI CAGNNNCTG 1 cut(s) 437
CciI TCATGA 2 cut(s) 709, 835
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 3 cut(s) 153, 165, 606
Cfr9I CCCGGG 1 cut(s) 472
ClaI ATCGAT 1 cut(s) 651
Csp6I GTAC 4 cut(s) 124, 585, 625, 705
CviAII CATG 7 cut(s) 505, 622, 710, 802, 836, 879, 903
CviQI GTAC 4 cut(s) 124, 585, 625, 705
DdeI CTNAG 3 cut(s) 114, 170, 523
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 119, 458
Eco24I GRGCYC 1 cut(s) 863
Eco47I GGWCC 3 cut(s) 153, 165, 606
Eco81I CCTNAGG 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 422, 896
EcoT14I CCWWGG 2 cut(s) 119, 458
EcoT38I GRGCYC 1 cut(s) 863
ErhI CCWWGG 2 cut(s) 119, 458
FaeI CATG 7 cut(s) 508, 625, 713, 805, 839, 882, 906
FaqI GGGAC 3 cut(s) 151, 164, 619
FatI CATG 7 cut(s) 504, 621, 709, 801, 835, 878, 902
FauI CCCGC 1 cut(s) 155
FauNDI CATATG 2 cut(s) 44, 301
FbaI TGATCA 3 cut(s) 31, 439, 721
Fnu4HI GCNGC 3 cut(s) 193, 196, 493
FokI GGATG 3 cut(s) 27, 371, 588
FriOI GRGCYC 1 cut(s) 863
Fsp4HI GCNGC 3 cut(s) 193, 196, 493
FspBI CTAG 5 cut(s) 120, 336, 459, 768, 792
GlaI GCGC 1 cut(s) 363
GluI GCNGC 3 cut(s) 193, 196, 493
GsuI CTGGAG 1 cut(s) 880
HapII CCGG 5 cut(s) 61, 199, 258, 342, 473
HhaI GCGC 1 cut(s) 364
Hin1II CATG 7 cut(s) 508, 625, 713, 805, 839, 882, 906
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HinfI GANTC 6 cut(s) 112, 329, 347, 406, 664, 713
HpaII CCGG 5 cut(s) 61, 199, 258, 342, 473
Hpy188I TCNGA 7 cut(s) 188, 411, 439, 595, 663, 824, 829
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 107, 584
HpyCH4IV ACGT 2 cut(s) 177, 370
HpyCH4V TGCA 5 cut(s) 132, 495, 518, 698, 805
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 63, 454, 742
HpyF3I CTNAG 3 cut(s) 114, 170, 523
HpySE526I ACGT 2 cut(s) 177, 370
Hsp92II CATG 7 cut(s) 508, 625, 713, 805, 839, 882, 906
HspAI GCGC 1 cut(s) 362
KflI GGGWCCC 1 cut(s) 165
Kpn2I TCCGGA 1 cut(s) 341
Ksp22I TGATCA 3 cut(s) 31, 439, 721
LmnI GCTCC 2 cut(s) 344, 858
Lsp1109I GCAGC 2 cut(s) 182, 479
LweI GCATC 1 cut(s) 349
MaeI CTAG 5 cut(s) 120, 336, 459, 768, 792
MaeII ACGT 2 cut(s) 177, 370
MaeIII GTNAC 2 cut(s) 89, 578
MboII GAAGA 3 cut(s) 214, 222, 560
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 3 cut(s) 8, 322, 434
MhlI GDGCHC 2 cut(s) 822, 863
MluCI AATT 7 cut(s) 52, 285, 295, 306, 464, 598, 853
MlyI GAGTC 2 cut(s) 106, 356
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 4 cut(s) 179, 182, 206, 748
MroI TCCGGA 1 cut(s) 341
MseI TTAA 4 cut(s) 227, 561, 647, 851
MslI CAYNNNNRTG 1 cut(s) 678
MspI CCGG 5 cut(s) 61, 199, 258, 342, 473
MspR9I CCNGG 6 cut(s) 61, 259, 424, 473, 474, 898
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 2 cut(s) 424, 898
MwoI GCNNNNNNNGC 4 cut(s) 54, 63, 454, 742
NciI CCSGG 4 cut(s) 61, 259, 473, 474
NdeI CATATG 2 cut(s) 44, 301
NlaIII CATG 7 cut(s) 508, 625, 713, 805, 839, 882, 906
NlaIV GGNNCC 5 cut(s) 166, 167, 324, 607, 860
NmuCI GTSAC 1 cut(s) 578
NspI RCATGY 1 cut(s) 625
PagI TCATGA 2 cut(s) 709, 835
PciI ACATGT 1 cut(s) 621
PfeI GAWTC 4 cut(s) 329, 406, 664, 713
PflMI CCANNNNNTGG 1 cut(s) 884
PfoI TCCNGGA 2 cut(s) 422, 896
PkrI GCNGC 3 cut(s) 194, 197, 494
PleI GAGTC 2 cut(s) 106, 355
PpsI GAGTC 2 cut(s) 106, 355
Ppu21I YACGTR 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 165
PscI ACATGT 1 cut(s) 621
PshBI ATTAAT 1 cut(s) 647
Psp5II RGGWCCY 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 422, 896
PspGI CCWGG 2 cut(s) 422, 896
PspN4I GGNNCC 5 cut(s) 166, 167, 324, 607, 860
PspPI GGNCC 3 cut(s) 153, 165, 606
PspPPI RGGWCCY 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 3 cut(s) 8, 322, 434
RsaI GTAC 4 cut(s) 125, 586, 626, 706
RsaNI GTAC 4 cut(s) 124, 585, 625, 705
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 4 cut(s) 227, 561, 647, 851
SatI GCNGC 3 cut(s) 193, 196, 493
Sau96I GGNCC 3 cut(s) 153, 165, 606
ScaI AGTACT 2 cut(s) 586, 706
SchI GAGTC 2 cut(s) 106, 356
ScrFI CCNGG 6 cut(s) 61, 259, 424, 473, 474, 898
SduI GDGCHC 2 cut(s) 822, 863
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 2 cut(s) 103, 139
SinI GGWCC 3 cut(s) 153, 165, 606
SmaI CCCGGG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 7 cut(s) 52, 285, 295, 306, 464, 598, 853
SsiI CCGC 3 cut(s) 66, 162, 192
SspMI CTAG 5 cut(s) 120, 336, 459, 768, 792
StyD4I CCNGG 6 cut(s) 59, 257, 422, 471, 472, 896
StyI CCWWGG 2 cut(s) 119, 458
TaaI ACNGT 2 cut(s) 107, 584
TaiI ACGT 2 cut(s) 180, 373
TaqI TCGA 2 cut(s) 651, 870
TasI AATT 7 cut(s) 52, 285, 295, 306, 464, 598, 853
TatI WGTACW 3 cut(s) 584, 624, 704
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 4 cut(s) 329, 406, 664, 713
Tru1I TTAA 4 cut(s) 227, 561, 647, 851
Tru9I TTAA 4 cut(s) 227, 561, 647, 851
TscAI CASTG 1 cut(s) 685
TseFI GTSAC 1 cut(s) 578
TseI GCWGC 2 cut(s) 195, 492
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 4 cut(s) 288, 306, 521, 726
TspMI CCCGGG 1 cut(s) 472
TspRI CASTG 1 cut(s) 685
Van91I CCANNNNNTGG 1 cut(s) 884
VpaK11BI GGWCC 3 cut(s) 153, 165, 606
VspI ATTAAT 1 cut(s) 647
XapI RAATTY 1 cut(s) 464
XceI RCATGY 1 cut(s) 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmaI CCCGGG 1 cut(s) 472
XmaJI CCTAGG 2 cut(s) 119, 458
XspI CTAG 5 cut(s) 120, 336, 459, 768, 792
ZrmI AGTACT 2 cut(s) 586, 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.