FvH4_6g20401

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016059
Physical Location & Seq
Reverse (-)
14029884 .. 14030789
906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20401.t1

Sequence Viewer

Length: 906 bp
ATGGAGAGTTCTGGATGGAAGCCAAACGATGATCATCATCATATATGCCCGAATTGTCCTCGGTGCGGTTGTTCCAACACCAAGTTTTGTTACTATAACAACTACAGTTTGACTCAGCCTAGGTACTTCTGCAAGGGCTGTAGGAGATACTGGACTAAAGGCGGGTCCCTCAGGAATGTCCCCGTAGGAGGCGGCTGCCGGAAGAACAGAAGAGGCTCAAGGTCGTTAAGGCTATCCACCAACACCACCGCGGCTAATGGGAGTAATAATGCTCATAGTGGCACAACTGGGCATAATTCACATGGAATTAGTAATTCACTGGCTCCAGAGTCTACTAGTTCTGGAGTGTCCAATCAGGATGCGCCACCACGTATTGATCTCGCAGTCGTTTATGCAAACTTCTTGAATCAAAAGCCAGATTCCAAGAGTTCAGACGGATCTGATCATCAGTTACCAGAGTTGCCTGGTGAATTCGACCCGGGTTTAGATTTTTCAAGCTGCATAGCAAACATGAACATCAATGCAGGCTCAGGATCAAGTATACAGTTGATGGAAGGAAATGGTCTAATTGGATCAATAGGATGTCAGAGTACTGTATCTGAAAATTGTGGAACCATAAACGACCACATGTACTTTGGTGGGTTAGACCCGTTAATCGTTCATCATCAGAAGCATCAAGATCTTAGCAGTGATCTAGTACAGTATACAAGTAGTACTCATGAATCGATTGATTTTGGGTTGCCACCGTTGCCAGACCAAGAGGTATTGTGGTCTAGATCTCACGATCAAATGATGGTTAGTCCTATCATGCAACCTACATCTATGGTCGGACCAGAAGCTCACGATCCGAACCTGTTAAATTGGAGCCCCTTATTCGATTTACCATGTACTTTCTCCAGGACATGA

Protein Analysis

302

Amino Acids

32.76

Weight (kDa)

6.13

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 18 - 71 2.8e-29 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52440 AT3G52440
fragaria_vesca FvH4_6g20401
malus_domestica MD12G1041000.v1.1 MD14G1040400.v1.1
prunus_persica Prupe.7G093900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0476121
rosa_laevigata RLG00000023789
rosa_multiflora Rmu_sc0000114.1_g000027
rosa_roxburghii Rroxscaffold_6G00405460
rosa_rugosa Rorug03G0152900
rosa_samantha Rh3BG234200 Rh3CG229600 Rh3DG229600
rosa_wichuraiana Rw3G018540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 332, 541, 704
AccII CGCG 1 cut(s) 251
AciI CCGC 5 cut(s) 66, 162, 192, 249, 251
AclWI GGATC 4 cut(s) 445, 541, 580, 839
AcsI RAATTY 1 cut(s) 470
AfaI GTAC 6 cut(s) 125, 592, 632, 699, 715, 889
AfiI CCNNNNNNNGG 2 cut(s) 65, 188
AflIII ACRYGT 1 cut(s) 627
AgsI TTSAA 2 cut(s) 406, 495
AhlI ACTAGT 1 cut(s) 335
AjnI CCWGG 2 cut(s) 463, 896
AluBI AGCT 2 cut(s) 498, 839
AluI AGCT 2 cut(s) 498, 839
AlwI GGATC 4 cut(s) 445, 541, 580, 839
Ama87I CYCGRG 1 cut(s) 478
ApeKI GCWGC 2 cut(s) 195, 498
ApoI RAATTY 1 cut(s) 470
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 2 cut(s) 165, 830
AsuC2I CCSGG 2 cut(s) 479, 480
AsuHPI GGTGA 1 cut(s) 479
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 2 cut(s) 165, 830
AvrII CCTAGG 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 170
BanII GRGCYC 1 cut(s) 869
BbvI GCAGC 2 cut(s) 182, 485
BccI CCATC 3 cut(s) 9, 544, 787
BciT130I CCWGG 2 cut(s) 465, 898
BclI TGATCA 2 cut(s) 31, 442
BcnI CCSGG 2 cut(s) 479, 480
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 4 cut(s) 120, 336, 695, 774
BfmI CTRYAG 2 cut(s) 103, 139
BglII AGATCT 2 cut(s) 679, 776
BisI GCNGC 4 cut(s) 193, 196, 252, 499
BlnI CCTAGG 1 cut(s) 119
BlsI GCNGC 4 cut(s) 194, 197, 253, 500
BmcAI AGTACT 2 cut(s) 592, 715
Bme1390I CCNGG 4 cut(s) 465, 479, 480, 898
Bme18I GGWCC 2 cut(s) 165, 830
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 2 cut(s) 165, 830
BmiI GGNNCC 5 cut(s) 166, 167, 324, 613, 866
BmrFI CCNGG 4 cut(s) 465, 479, 480, 898
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 2 cut(s) 349, 682
BmuI ACTGGG 1 cut(s) 297
BpmI CTGGAG 3 cut(s) 309, 363, 880
Bpu10I CCTNAGC 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 2 cut(s) 479, 480
Bsa29I ATCGAT 1 cut(s) 725
BsaAI YACGTR 1 cut(s) 371
BsaBI GATNNNNATC 2 cut(s) 33, 36
BsaJI CCNNGG 4 cut(s) 59, 119, 249, 478
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 188
Bse1I ACTGG 3 cut(s) 155, 292, 324
Bse21I CCTNAGG 1 cut(s) 170
Bse8I GATNNNNATC 2 cut(s) 33, 36
BseBI CCWGG 2 cut(s) 465, 898
BseCI ATCGAT 1 cut(s) 725
BseDI CCNNGG 4 cut(s) 59, 119, 249, 478
BseGI GGATG 3 cut(s) 20, 364, 587
BseJI GATNNNNATC 2 cut(s) 33, 36
BseLI CCNNNNNNNGG 2 cut(s) 65, 188
BseMII CTCAG 3 cut(s) 128, 184, 543
BseNI ACTGG 3 cut(s) 155, 292, 324
BseXI GCAGC 2 cut(s) 182, 485
Bsh1236I CGCG 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 725
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 2 cut(s) 199, 479
BslFI GGGAC 2 cut(s) 151, 164
BslI CCNNNNNNNGG 2 cut(s) 65, 188
BsmFI GGGAC 2 cut(s) 151, 164
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 869
BspACI CCGC 5 cut(s) 66, 162, 192, 249, 251
BspCNI CTCAG 3 cut(s) 127, 183, 542
BspDI ATCGAT 1 cut(s) 725
BspFNI CGCG 1 cut(s) 251
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 5 cut(s) 166, 167, 324, 613, 866
BspPI GGATC 4 cut(s) 445, 541, 580, 839
BsrI ACTGG 3 cut(s) 155, 292, 324
BssECI CCNNGG 4 cut(s) 59, 119, 249, 478
BssNAI GTATAC 2 cut(s) 542, 705
BssT1I CCWWGG 1 cut(s) 119
Bst1107I GTATAC 2 cut(s) 542, 705
Bst2UI CCWGG 2 cut(s) 465, 898
Bst4CI ACNGT 5 cut(s) 107, 546, 595, 702, 747
Bst6I CTCTTC 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 4 cut(s) 114, 170, 529, 683
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 3 cut(s) 20, 364, 587
BstFNI CGCG 1 cut(s) 251
BstHHI GCGC 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 748
BstNI CCWGG 2 cut(s) 465, 898
BstNSI RCATGY 1 cut(s) 631
BstSCI CCNGG 4 cut(s) 463, 477, 478, 896
BstSFI CTRYAG 2 cut(s) 103, 139
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 182, 485
BstX2I RGATCY 3 cut(s) 437, 679, 776
BstYI RGATCY 3 cut(s) 437, 679, 776
BstZ17I GTATAC 2 cut(s) 542, 705
Bsu15I ATCGAT 1 cut(s) 725
Bsu36I CCTNAGG 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 725
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 3 cut(s) 20, 364, 587
BtsI GCAGTG 1 cut(s) 694
BtsIMutI CAGTG 2 cut(s) 317, 694
Cac8I GCNNGC 1 cut(s) 526
CciI TCATGA 1 cut(s) 718
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 165, 830
Cfr42I CCGCGG 1 cut(s) 252
Cfr9I CCCGGG 1 cut(s) 478
ClaI ATCGAT 1 cut(s) 725
Csp6I GTAC 6 cut(s) 124, 591, 631, 698, 714, 888
CviAII CATG 7 cut(s) 302, 511, 628, 719, 808, 885, 903
CviQI GTAC 6 cut(s) 124, 591, 631, 698, 714, 888
DdeI CTNAG 4 cut(s) 114, 170, 529, 683
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 869
Eco47I GGWCC 2 cut(s) 165, 830
Eco81I CCTNAGG 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 463, 896
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 869
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 7 cut(s) 305, 514, 631, 722, 811, 888, 906
FaqI GGGAC 2 cut(s) 151, 164
FatI CATG 7 cut(s) 301, 510, 627, 718, 807, 884, 902
FauI CCCGC 1 cut(s) 155
FbaI TGATCA 2 cut(s) 31, 442
FblI GTMKAC 3 cut(s) 332, 541, 704
Fnu4HI GCNGC 4 cut(s) 193, 196, 252, 499
FokI GGATG 3 cut(s) 27, 371, 594
FriOI GRGCYC 1 cut(s) 869
Fsp4HI GCNGC 4 cut(s) 193, 196, 252, 499
FspBI CTAG 4 cut(s) 120, 336, 695, 774
GlaI GCGC 1 cut(s) 363
GluI GCNGC 4 cut(s) 193, 196, 252, 499
GsuI CTGGAG 3 cut(s) 309, 363, 880
HapII CCGG 2 cut(s) 199, 479
HhaI GCGC 1 cut(s) 364
Hin1II CATG 7 cut(s) 305, 514, 631, 722, 811, 888, 906
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HinfI GANTC 5 cut(s) 112, 329, 406, 419, 722
HpaII CCGG 2 cut(s) 199, 479
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 3 cut(s) 333, 542, 705
Hpy188I TCNGA 7 cut(s) 433, 442, 588, 601, 669, 830, 849
Hpy8I GTNNAC 3 cut(s) 333, 542, 705
HpyAV CCTTC 1 cut(s) 548
HpyCH4III ACNGT 5 cut(s) 107, 546, 595, 702, 747
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 5 cut(s) 132, 395, 501, 524, 811
HpyF10VI GCNNNNNNNGC 1 cut(s) 748
HpyF3I CTNAG 4 cut(s) 114, 170, 529, 683
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 7 cut(s) 305, 514, 631, 722, 811, 888, 906
HspAI GCGC 1 cut(s) 362
KflI GGGWCCC 1 cut(s) 165
Ksp22I TGATCA 2 cut(s) 31, 442
KspI CCGCGG 1 cut(s) 252
LmnI GCTCC 2 cut(s) 328, 864
Lsp1109I GCAGC 2 cut(s) 182, 485
LweI GCATC 2 cut(s) 349, 682
MaeI CTAG 4 cut(s) 120, 336, 695, 774
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 2 cut(s) 89, 450
MboII GAAGA 2 cut(s) 214, 222
MflI RGATCY 3 cut(s) 437, 679, 776
MhlI GDGCHC 1 cut(s) 869
MluCI AATT 8 cut(s) 52, 295, 306, 313, 470, 567, 604, 859
MlyI GAGTC 2 cut(s) 106, 338
MmeI TCCRAC 2 cut(s) 99, 808
MnlI CCTC 5 cut(s) 69, 179, 182, 206, 754
MseI TTAA 3 cut(s) 227, 653, 857
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 2 cut(s) 199, 479
MspR9I CCNGG 4 cut(s) 465, 479, 480, 898
MvaI CCWGG 2 cut(s) 465, 898
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 748
NciI CCSGG 2 cut(s) 479, 480
NlaIII CATG 7 cut(s) 305, 514, 631, 722, 811, 888, 906
NlaIV GGNNCC 5 cut(s) 166, 167, 324, 613, 866
NspI RCATGY 1 cut(s) 631
PagI TCATGA 1 cut(s) 718
PciI ACATGT 1 cut(s) 627
PfeI GAWTC 3 cut(s) 406, 419, 722
PfoI TCCNGGA 1 cut(s) 896
PkrI GCNGC 4 cut(s) 194, 197, 253, 500
PleI GAGTC 2 cut(s) 106, 337
PpsI GAGTC 2 cut(s) 106, 337
Ppu21I YACGTR 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 165
PscI ACATGT 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 463, 896
PspGI CCWGG 2 cut(s) 463, 896
PspN4I GGNNCC 5 cut(s) 166, 167, 324, 613, 866
PspPI GGNCC 2 cut(s) 165, 830
PspPPI RGGWCCY 1 cut(s) 165
PsuI RGATCY 3 cut(s) 437, 679, 776
RsaI GTAC 6 cut(s) 125, 592, 632, 699, 715, 889
RsaNI GTAC 6 cut(s) 124, 591, 631, 698, 714, 888
SacII CCGCGG 1 cut(s) 252
SaqAI TTAA 3 cut(s) 227, 653, 857
SatI GCNGC 4 cut(s) 193, 196, 252, 499
Sau96I GGNCC 2 cut(s) 165, 830
ScaI AGTACT 2 cut(s) 592, 715
SchI GAGTC 2 cut(s) 106, 338
ScrFI CCNGG 4 cut(s) 465, 479, 480, 898
SduI GDGCHC 1 cut(s) 869
SetI ASST 8 cut(s) 125, 224, 373, 500, 765, 817, 841, 855
SfaNI GCATC 2 cut(s) 349, 682
SfcI CTRYAG 2 cut(s) 103, 139
Sfr303I CCGCGG 1 cut(s) 252
SgrBI CCGCGG 1 cut(s) 252
SinI GGWCC 2 cut(s) 165, 830
SmaI CCCGGG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 8 cut(s) 52, 295, 306, 313, 470, 567, 604, 859
SsiI CCGC 5 cut(s) 66, 162, 192, 249, 251
SspMI CTAG 4 cut(s) 120, 336, 695, 774
StyD4I CCNGG 4 cut(s) 463, 477, 478, 896
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 5 cut(s) 107, 546, 595, 702, 747
TaiI ACGT 1 cut(s) 373
TaqI TCGA 3 cut(s) 474, 725, 876
TasI AATT 8 cut(s) 52, 295, 306, 313, 470, 567, 604, 859
TatI WGTACW 5 cut(s) 590, 630, 697, 713, 887
TauI GCSGC 2 cut(s) 195, 254
TfiI GAWTC 3 cut(s) 406, 419, 722
Tru1I TTAA 3 cut(s) 227, 653, 857
Tru9I TTAA 3 cut(s) 227, 653, 857
TscAI CASTG 2 cut(s) 324, 694
TseI GCWGC 2 cut(s) 195, 498
TspDTI ATGAA 3 cut(s) 527, 650, 735
TspGWI ACGGA 1 cut(s) 450
TspMI CCCGGG 1 cut(s) 478
TspRI CASTG 2 cut(s) 324, 694
VpaK11BI GGWCC 2 cut(s) 165, 830
XapI RAATTY 1 cut(s) 470
XbaI TCTAGA 1 cut(s) 773
XceI RCATGY 1 cut(s) 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmaI CCCGGG 1 cut(s) 478
XmaJI CCTAGG 1 cut(s) 119
XmiI GTMKAC 3 cut(s) 332, 541, 704
XspI CTAG 4 cut(s) 120, 336, 695, 774
ZrmI AGTACT 2 cut(s) 592, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.