Prupe.7G093900_v2.0.a1

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016059
Physical Location & Seq
Forward (+)
12658713 .. 12660144
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G093900.1

Sequence Viewer

Length: 933 bp
ATGGAGAGAGCAGGATGGAAGCCAAACGATGATCATCATCAGATAACTCCAAATTGTCCCCGGTGTGGTTGTTCCAACACCAAGTTTTGTTACTACAACAACTATAGCTTAACTCAACCAAGGTACTTCTGCAAGGGCTGTAGGAGGTACTGGACCAAGGGTGGGTCCCTCAGAAACGTCCCGGTAGGAGGCGGCTGCCGGAAAAACAGAAGAGGGTCCAAGTCCTTAAGGCTATCCACCACTGCCACAGGCACAGAAGGTCATGTTCATCAATCTAATAAGAGTACTAGTAATTTGGGTAGTTATGGGGGTACTGTTCACAATTCATTTGGCAGCAATGTGAACAACTCATTGGGTGATTCCACAAGCTCCTCAGTAAGTCAAGATGGTTCAAGTATTGATCTTGCACTTGTTTATGCAAATTTCTTGAACCAAAAGCCAGACAATTCGAATAGCACTGGATCTGATCATCAGCTGCCAGAATTACCTAGTGAATTCGATCCAGCTGCACTAGATTTTTCAAGCATGGCATTGAACATGAACAATGCAAGCTCAGGAGGCAACATTAGTAGCATTCAATTAACGGAAGATCATCAAAATGGTCTTGTTGGGTCACTTGGATGCCACACTGAAAATTGTAGCACCAATGAACTCATGTACTTTGGTGGATTGGACCCATTAATTCATCATCATGAGAAGCATCATCATCAAATTCAAGATGCAAGTGATTTTGGGTTGCCACCAATATTGCCAGTAGGCCAAGAGGAGGCATTGTGGTCTACTTCTCAAATGATGGCTCATGCAAGTCATACTATGCAAGCTGCTACACCACTACTAGGTGGAAGGCCAGAAGCTCATGATCCAAACCTCTTAATTGGTAGTTGTTGGAGCCCATTTGATTTGCCATGTAATGAAACTTTCTCCAGGACTTGA

Protein Analysis

311

Amino Acids

33.66

Weight (kDa)

6.25

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52440 AT3G52440
fragaria_vesca FvH4_6g20401
malus_domestica MD12G1041000.v1.1 MD14G1040400.v1.1
prunus_persica Prupe.7G093900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0476121
rosa_laevigata RLG00000023789
rosa_multiflora Rmu_sc0000114.1_g000027
rosa_roxburghii Rroxscaffold_6G00405460
rosa_rugosa Rorug03G0152900
rosa_samantha Rh3BG234200 Rh3CG229600 Rh3DG229600
rosa_wichuraiana Rw3G018540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 779
AciI CCGC 1 cut(s) 192
AclWI GGATC 3 cut(s) 469, 494, 854
AcsI RAATTY 3 cut(s) 421, 494, 711
AfaI GTAC 5 cut(s) 125, 149, 286, 313, 659
AfiI CCNNNNNNNGG 5 cut(s) 65, 162, 188, 766, 836
AflII CTTAAG 1 cut(s) 226
AgsI TTSAA 6 cut(s) 393, 430, 522, 535, 578, 716
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 1 cut(s) 923
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 7 cut(s) 108, 369, 475, 506, 552, 821, 854
AluI AGCT 7 cut(s) 108, 369, 475, 506, 552, 821, 854
AlwI GGATC 3 cut(s) 469, 494, 854
AoxI GGCC 2 cut(s) 757, 845
ApeKI GCWGC 5 cut(s) 195, 333, 475, 506, 821
ApoI RAATTY 3 cut(s) 421, 494, 711
AseI ATTAAT 1 cut(s) 680
AspS9I GGNCC 4 cut(s) 153, 165, 216, 673
AsuC2I CCSGG 2 cut(s) 61, 182
AsuHPI GGTGA 1 cut(s) 368
AsuII TTCGAA 1 cut(s) 449
AvaII GGWCC 4 cut(s) 153, 165, 216, 673
BanII GRGCYC 1 cut(s) 893
BbvI GCAGC 5 cut(s) 182, 345, 462, 493, 808
BccI CCATC 3 cut(s) 9, 380, 787
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 1 cut(s) 925
BclI TGATCA 2 cut(s) 31, 466
BcnI CCSGG 2 cut(s) 61, 182
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 4 cut(s) 288, 489, 512, 836
BfmI CTRYAG 2 cut(s) 103, 139
BfrI CTTAAG 1 cut(s) 226
BisI GCNGC 6 cut(s) 193, 196, 334, 476, 507, 822
BlsI GCNGC 6 cut(s) 194, 197, 335, 477, 508, 823
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 3 cut(s) 61, 182, 925
Bme18I GGWCC 4 cut(s) 153, 165, 216, 673
BmgT120I GGNCC 4 cut(s) 153, 165, 216, 673
BmiI GGNNCC 5 cut(s) 166, 167, 217, 675, 890
BmrFI CCNGG 3 cut(s) 61, 182, 925
BmsI GCATC 3 cut(s) 611, 709, 709
BpmI CTGGAG 1 cut(s) 907
Bpu10I CCTNAGC 1 cut(s) 553
Bpu14I TTCGAA 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 61, 182
BsaBI GATNNNNATC 2 cut(s) 33, 36
BsaJI CCNNGG 3 cut(s) 59, 119, 156
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bsc4I CCNNNNNNNGG 5 cut(s) 65, 162, 188, 766, 836
Bse1I ACTGG 3 cut(s) 155, 463, 752
Bse3DI GCAATG 1 cut(s) 343
Bse8I GATNNNNATC 2 cut(s) 33, 36
BseBI CCWGG 1 cut(s) 925
BseDI CCNNGG 3 cut(s) 59, 119, 156
BseGI GGATG 2 cut(s) 20, 626
BseJI GATNNNNATC 2 cut(s) 33, 36
BseLI CCNNNNNNNGG 5 cut(s) 65, 162, 188, 766, 836
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 3 cut(s) 184, 387, 567
BseNI ACTGG 3 cut(s) 155, 463, 752
BseRI GAGGAG 2 cut(s) 361, 779
BseXI GCAGC 5 cut(s) 182, 345, 462, 493, 808
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 2 cut(s) 759, 847
BsiSI CCGG 3 cut(s) 61, 182, 199
BslFI GGGAC 3 cut(s) 42, 151, 164
BslI CCNNNNNNNGG 5 cut(s) 65, 162, 188, 766, 836
BsmFI GGGAC 3 cut(s) 42, 151, 164
BsmI GAATGC 1 cut(s) 573
BsnI GGCC 2 cut(s) 759, 847
Bsp119I TTCGAA 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 893
Bsp143I GATC 7 cut(s) 31, 400, 461, 466, 499, 589, 859
BspACI CCGC 1 cut(s) 192
BspANI GGCC 2 cut(s) 759, 847
BspCNI CTCAG 3 cut(s) 183, 386, 566
BspHI TCATGA 2 cut(s) 691, 856
BspLI GGNNCC 5 cut(s) 166, 167, 217, 675, 890
BspPI GGATC 3 cut(s) 469, 494, 854
BspT104I TTCGAA 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 3 cut(s) 155, 463, 752
BssECI CCNNGG 3 cut(s) 59, 119, 156
BssMI GATC 7 cut(s) 31, 400, 461, 466, 499, 589, 859
BssT1I CCWWGG 2 cut(s) 119, 156
Bst2UI CCWGG 1 cut(s) 925
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 205
BstAFI CTTAAG 1 cut(s) 226
BstBI TTCGAA 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 550, 819
BstDEI CTNAG 3 cut(s) 170, 373, 553
BstF5I GGATG 2 cut(s) 20, 626
BstKTI GATC 7 cut(s) 34, 403, 464, 469, 502, 592, 862
BstMBI GATC 7 cut(s) 31, 400, 461, 466, 499, 589, 859
BstMWI GCNNNNNNNGC 1 cut(s) 558
BstNI CCWGG 1 cut(s) 925
BstSCI CCNGG 3 cut(s) 59, 180, 923
BstSFI CTRYAG 2 cut(s) 103, 139
BstV1I GCAGC 5 cut(s) 182, 345, 462, 493, 808
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuRI GGCC 2 cut(s) 759, 847
BtsCI GGATG 2 cut(s) 20, 626
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 3 cut(s) 240, 456, 627
Cac8I GCNNGC 2 cut(s) 550, 819
CciI TCATGA 2 cut(s) 691, 856
Cfr13I GGNCC 4 cut(s) 153, 165, 216, 673
Csp6I GTAC 5 cut(s) 124, 148, 285, 312, 658
CspCI CAANNNNNGTGG 2 cut(s) 729, 764
CviAII CATG 8 cut(s) 263, 526, 538, 655, 692, 800, 857, 906
CviQI GTAC 5 cut(s) 124, 148, 285, 312, 658
DdeI CTNAG 3 cut(s) 170, 373, 553
DpnI GATC 7 cut(s) 33, 402, 463, 468, 501, 591, 861
DpnII GATC 7 cut(s) 31, 400, 461, 466, 499, 589, 859
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 119, 156
Eco24I GRGCYC 1 cut(s) 893
Eco47I GGWCC 4 cut(s) 153, 165, 216, 673
EcoO109I RGGNCCY 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 923
EcoT14I CCWWGG 2 cut(s) 119, 156
EcoT38I GRGCYC 1 cut(s) 893
ErhI CCWWGG 2 cut(s) 119, 156
FaeI CATG 8 cut(s) 266, 529, 541, 658, 695, 803, 860, 909
FaqI GGGAC 3 cut(s) 42, 151, 164
FatI CATG 8 cut(s) 262, 525, 537, 654, 691, 799, 856, 905
FbaI TGATCA 2 cut(s) 31, 466
FblI GTMKAC 1 cut(s) 779
Fnu4HI GCNGC 6 cut(s) 193, 196, 334, 476, 507, 822
FokI GGATG 2 cut(s) 27, 633
FriOI GRGCYC 1 cut(s) 893
Fsp4HI GCNGC 6 cut(s) 193, 196, 334, 476, 507, 822
FspBI CTAG 4 cut(s) 288, 489, 512, 836
GluI GCNGC 6 cut(s) 193, 196, 334, 476, 507, 822
GsuI CTGGAG 1 cut(s) 907
HaeIII GGCC 2 cut(s) 759, 847
HapII CCGG 3 cut(s) 61, 182, 199
Hin1II CATG 8 cut(s) 266, 529, 541, 658, 695, 803, 860, 909
HinfI GANTC 1 cut(s) 359
HpaII CCGG 3 cut(s) 61, 182, 199
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 3 cut(s) 319, 343, 780
Hpy188I TCNGA 3 cut(s) 42, 173, 466
Hpy188III TCNNGA 6 cut(s) 383, 427, 555, 692, 716, 857
Hpy8I GTNNAC 3 cut(s) 319, 343, 780
HpyAV CCTTC 2 cut(s) 251, 837
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 8 cut(s) 132, 407, 419, 509, 548, 722, 803, 817
HpyF10VI GCNNNNNNNGC 1 cut(s) 558
HpyF3I CTNAG 3 cut(s) 170, 373, 553
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 8 cut(s) 266, 529, 541, 658, 695, 803, 860, 909
KflI GGGWCCC 1 cut(s) 165
Ksp22I TGATCA 2 cut(s) 31, 466
Kzo9I GATC 7 cut(s) 31, 400, 461, 466, 499, 589, 859
LmnI GCTCC 2 cut(s) 374, 888
Lsp1109I GCAGC 5 cut(s) 182, 345, 462, 493, 808
LweI GCATC 3 cut(s) 611, 709, 709
MaeI CTAG 4 cut(s) 288, 489, 512, 836
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 89, 612
MalI GATC 7 cut(s) 33, 402, 463, 468, 501, 591, 861
MboI GATC 7 cut(s) 31, 400, 461, 466, 499, 589, 859
MboII GAAGA 2 cut(s) 222, 599
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 1 cut(s) 893
MmeI TCCRAC 2 cut(s) 99, 866
MnlI CCTC 9 cut(s) 138, 179, 182, 206, 382, 551, 757, 760, 878
MseI TTAA 5 cut(s) 110, 227, 581, 680, 872
MslI CAYNNNNRTG 3 cut(s) 597, 619, 690
MspA1I CMGCKG 2 cut(s) 475, 506
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 3 cut(s) 61, 182, 199
MspR9I CCNGG 3 cut(s) 61, 182, 925
Mva1269I GAATGC 1 cut(s) 573
MvaI CCWGG 1 cut(s) 925
MwoI GCNNNNNNNGC 1 cut(s) 558
NciI CCSGG 2 cut(s) 61, 182
NdeII GATC 7 cut(s) 31, 400, 461, 466, 499, 589, 859
NlaIII CATG 8 cut(s) 266, 529, 541, 658, 695, 803, 860, 909
NlaIV GGNNCC 5 cut(s) 166, 167, 217, 675, 890
NmuCI GTSAC 1 cut(s) 612
NspV TTCGAA 1 cut(s) 449
PagI TCATGA 2 cut(s) 691, 856
PctI GAATGC 1 cut(s) 573
PfeI GAWTC 1 cut(s) 359
PfoI TCCNGGA 1 cut(s) 923
PkrI GCNGC 6 cut(s) 194, 197, 335, 477, 508, 823
PpuMI RGGWCCY 1 cut(s) 165
PshBI ATTAAT 1 cut(s) 680
Psp5II RGGWCCY 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 923
PspGI CCWGG 1 cut(s) 923
PspN4I GGNNCC 5 cut(s) 166, 167, 217, 675, 890
PspPI GGNCC 4 cut(s) 153, 165, 216, 673
PspPPI RGGWCCY 1 cut(s) 165
PsuI RGATCY 1 cut(s) 461
PvuII CAGCTG 2 cut(s) 475, 506
RsaI GTAC 5 cut(s) 125, 149, 286, 313, 659
RsaNI GTAC 5 cut(s) 124, 148, 285, 312, 658
RseI CAYNNNNRTG 3 cut(s) 597, 619, 690
SaqAI TTAA 5 cut(s) 110, 227, 581, 680, 872
SatI GCNGC 6 cut(s) 193, 196, 334, 476, 507, 822
Sau3AI GATC 7 cut(s) 31, 400, 461, 466, 499, 589, 859
Sau96I GGNCC 4 cut(s) 153, 165, 216, 673
ScaI AGTACT 1 cut(s) 286
ScrFI CCNGG 3 cut(s) 61, 182, 925
SduI GDGCHC 1 cut(s) 893
SfaNI GCATC 3 cut(s) 611, 709, 709
SfcI CTRYAG 2 cut(s) 103, 139
SfuI TTCGAA 1 cut(s) 449
SinI GGWCC 4 cut(s) 153, 165, 216, 673
SmiMI CAYNNNNRTG 3 cut(s) 597, 619, 690
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
SpeI ACTAGT 1 cut(s) 287
SsiI CCGC 1 cut(s) 192
SspI AATATT 1 cut(s) 747
SspMI CTAG 4 cut(s) 288, 489, 512, 836
StyD4I CCNGG 3 cut(s) 59, 180, 923
StyI CCWWGG 2 cut(s) 119, 156
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 449, 498
TatI WGTACW 2 cut(s) 284, 657
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 5 cut(s) 110, 227, 581, 680, 872
Tru9I TTAA 5 cut(s) 110, 227, 581, 680, 872
TscAI CASTG 3 cut(s) 247, 463, 634
TseFI GTSAC 1 cut(s) 612
TseI GCWGC 5 cut(s) 195, 333, 475, 506, 821
Tsp45I GTSAC 1 cut(s) 612
TspDTI ATGAA 6 cut(s) 257, 315, 554, 663, 674, 927
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 3 cut(s) 247, 463, 634
Vha464I CTTAAG 1 cut(s) 226
VpaK11BI GGWCC 4 cut(s) 153, 165, 216, 673
VspI ATTAAT 1 cut(s) 680
XapI RAATTY 3 cut(s) 421, 494, 711
XmiI GTMKAC 1 cut(s) 779
XspI CTAG 4 cut(s) 288, 489, 512, 836
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.