Rh3CG229600

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016059
Physical Location & Seq
Reverse (-)
21655753 .. 21656652
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG229600.1

Sequence Viewer

Length: 900 bp
ATGGAGAGATCTGGATGGAAGCCAAACGATGATCATCATCACATATGCCCGAATTGCCCCCGGTGCGGTTGTTCTAACACCAAGTTTTGTTACTATAACAACTACAGTTTGACTCAGCCTAGGTACTTCTGCAAGGGCTGTAGGAGATACTGGACCAAAGGCGGTTCCCTCAGGAACGTCCCCGTCGGAGGCGGCTGCCGGAAGAACAGAAGAGGGTCAAGGTCGTTAAGGCTATCCACCAACACCACCACGGCTACCGGGAGTAATAATGTGAATAGTGGCACAATTGGGCATAATTCATATGGAATTAGTAGTTCATTGGATCCAGATTCTACTAGCTCCGGAGAGTCCAATCAGGATGCGCCACCACGTATTGATCTCGCAGTCGTTTATGCAAACTTCTTGAATCAGAAGCCAGTTTCCAGGAGTTCAGGATCTGATCAGTTGCCAGAATTTCCTGGGGAATTCAACCCGGGTTTAGATTTTTCAAGCTGCATAGCAAACATGAACATCAATGCAGGCTCAGGCTCAAGTATTCAGTTGATGGAAGAAAATGGTCTTAATCGATGTCACAGTACTCTATCTGAAAATTGTGGGACCATCAATGACCACATGTACTTTGGTGGGTTAGACCCATTAATCGATCATCATCAGAAGCATCAAGATCATAGCAGTGATCTAGTACAATATGCAAGTAGTACTCATGAGTCAACTGATCATTTTGGGTTGCCACCATTGCCAGACCAAGAAGTATTGTGGTCTAGTTCTCACGATCAAATGATGGCTAGTCCTATCATGCAACCTACCCCTGTGCTCGGATCAGAGGCTCATGATCCAAACCTGTTAAATTGGAGCCCCTTATTCGATTTACCATGTAATGGAACTTTCTCCAGGACATGA

Protein Analysis

299

Amino Acids

32.85

Weight (kDa)

6.13

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 18 - 71 2.8e-29 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52440 AT3G52440
fragaria_vesca FvH4_6g20401
malus_domestica MD12G1041000.v1.1 MD14G1040400.v1.1
prunus_persica Prupe.7G093900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0476121
rosa_laevigata RLG00000023789
rosa_multiflora Rmu_sc0000114.1_g000027
rosa_roxburghii Rroxscaffold_6G00405460
rosa_rugosa Rorug03G0152900
rosa_samantha Rh3BG234200 Rh3CG229600 Rh3DG229600
rosa_wichuraiana Rw3G018540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 878
AccIII TCCGGA 1 cut(s) 341
AciI CCGC 3 cut(s) 66, 162, 192
AclWI GGATC 5 cut(s) 317, 330, 442, 826, 827
AcsI RAATTY 2 cut(s) 452, 464
AfaI GTAC 5 cut(s) 125, 577, 617, 684, 700
AfiI CCNNNNNNNGG 4 cut(s) 65, 188, 815, 878
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 3 cut(s) 406, 469, 489
AjnI CCWGG 3 cut(s) 422, 457, 890
AluBI AGCT 2 cut(s) 339, 492
AluI AGCT 2 cut(s) 339, 492
Alw21I GWGCWC 1 cut(s) 816
AlwI GGATC 5 cut(s) 317, 330, 442, 826, 827
AlwNI CAGNNNCTG 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 472
Aor13HI TCCGGA 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 195, 492
ApoI RAATTY 2 cut(s) 452, 464
AseI ATTAAT 1 cut(s) 638
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 2 cut(s) 153, 597
AsuC2I CCSGG 4 cut(s) 61, 259, 473, 474
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 2 cut(s) 153, 597
AvrII CCTAGG 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 170
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 857
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 2 cut(s) 182, 479
BccI CCATC 4 cut(s) 9, 538, 608, 775
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 3 cut(s) 424, 459, 892
BclI TGATCA 3 cut(s) 31, 439, 715
BcnI CCSGG 4 cut(s) 61, 259, 473, 474
BfaI CTAG 5 cut(s) 120, 336, 680, 762, 786
BfmI CTRYAG 2 cut(s) 103, 139
BglII AGATCT 1 cut(s) 8
BisI GCNGC 3 cut(s) 193, 196, 493
BlnI CCTAGG 1 cut(s) 119
BlsI GCNGC 3 cut(s) 194, 197, 494
BmcAI AGTACT 2 cut(s) 577, 700
Bme1390I CCNGG 7 cut(s) 61, 259, 424, 459, 473, 474, 892
Bme18I GGWCC 2 cut(s) 153, 597
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 2 cut(s) 153, 597
BmiI GGNNCC 4 cut(s) 166, 324, 598, 854
BmrFI CCNGG 7 cut(s) 61, 259, 424, 459, 473, 474, 892
BmsI GCATC 2 cut(s) 349, 667
BpmI CTGGAG 1 cut(s) 874
Bpu10I CCTNAGC 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 4 cut(s) 61, 259, 473, 474
Bsa29I ATCGAT 2 cut(s) 565, 642
BsaAI YACGTR 1 cut(s) 371
BsaBI GATNNNNATC 3 cut(s) 33, 36, 648
BsaJI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BsaWI WCCGGW 1 cut(s) 341
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 188, 815, 878
Bse1I ACTGG 2 cut(s) 155, 416
Bse21I CCTNAGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 734
Bse8I GATNNNNATC 3 cut(s) 33, 36, 648
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 3 cut(s) 424, 459, 892
BseCI ATCGAT 2 cut(s) 565, 642
BseDI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BseGI GGATG 2 cut(s) 20, 364
BseJI GATNNNNATC 3 cut(s) 33, 36, 648
BseLI CCNNNNNNNGG 4 cut(s) 65, 188, 815, 878
BseMI GCAATG 1 cut(s) 734
BseMII CTCAG 3 cut(s) 128, 184, 537
BseNI ACTGG 2 cut(s) 155, 416
BseXI GCAGC 2 cut(s) 182, 479
BshVI ATCGAT 2 cut(s) 565, 642
BsiHKAI GWGCWC 1 cut(s) 816
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 5 cut(s) 61, 199, 258, 342, 473
BslFI GGGAC 2 cut(s) 164, 610
BslI CCNNNNNNNGG 4 cut(s) 65, 188, 815, 878
BsmFI GGGAC 2 cut(s) 164, 610
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 2 cut(s) 816, 857
Bsp13I TCCGGA 1 cut(s) 341
BspACI CCGC 3 cut(s) 66, 162, 192
BspCNI CTCAG 3 cut(s) 127, 183, 536
BspDI ATCGAT 2 cut(s) 565, 642
BspEI TCCGGA 1 cut(s) 341
BspHI TCATGA 2 cut(s) 703, 829
BspLI GGNNCC 4 cut(s) 166, 324, 598, 854
BspPI GGATC 5 cut(s) 317, 330, 442, 826, 827
BsrDI GCAATG 1 cut(s) 734
BsrI ACTGG 2 cut(s) 155, 416
BssECI CCNNGG 5 cut(s) 59, 119, 249, 458, 472
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 3 cut(s) 424, 459, 892
Bst4CI ACNGT 2 cut(s) 107, 575
Bst6I CTCTTC 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 3 cut(s) 114, 170, 523
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 20, 364
BstHHI GCGC 1 cut(s) 364
BstMWI GCNNNNNNNGC 3 cut(s) 54, 63, 736
BstNI CCWGG 3 cut(s) 424, 459, 892
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 7 cut(s) 59, 257, 422, 457, 471, 472, 890
BstSFI CTRYAG 2 cut(s) 103, 139
BstV1I GCAGC 2 cut(s) 182, 479
BstX2I RGATCY 3 cut(s) 8, 322, 434
BstYI RGATCY 3 cut(s) 8, 322, 434
Bsu15I ATCGAT 2 cut(s) 565, 642
Bsu36I CCTNAGG 1 cut(s) 170
BsuTUI ATCGAT 2 cut(s) 565, 642
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 20, 364
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 1 cut(s) 679
Cac8I GCNNGC 1 cut(s) 520
CaiI CAGNNNCTG 1 cut(s) 437
CciI TCATGA 2 cut(s) 703, 829
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 153, 597
Cfr9I CCCGGG 1 cut(s) 472
ClaI ATCGAT 2 cut(s) 565, 642
Csp6I GTAC 5 cut(s) 124, 576, 616, 683, 699
CviAII CATG 7 cut(s) 505, 613, 704, 796, 830, 873, 897
CviQI GTAC 5 cut(s) 124, 576, 616, 683, 699
DdeI CTNAG 3 cut(s) 114, 170, 523
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 857
Eco47I GGWCC 2 cut(s) 153, 597
Eco81I CCTNAGG 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 472
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 3 cut(s) 422, 457, 890
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 857
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 7 cut(s) 508, 616, 707, 799, 833, 876, 900
FaqI GGGAC 2 cut(s) 164, 610
FatI CATG 7 cut(s) 504, 612, 703, 795, 829, 872, 896
FauNDI CATATG 2 cut(s) 44, 301
FbaI TGATCA 3 cut(s) 31, 439, 715
Fnu4HI GCNGC 3 cut(s) 193, 196, 493
FokI GGATG 2 cut(s) 27, 371
FriOI GRGCYC 1 cut(s) 857
Fsp4HI GCNGC 3 cut(s) 193, 196, 493
FspBI CTAG 5 cut(s) 120, 336, 680, 762, 786
GlaI GCGC 1 cut(s) 363
GluI GCNGC 3 cut(s) 193, 196, 493
GsuI CTGGAG 1 cut(s) 874
HapII CCGG 5 cut(s) 61, 199, 258, 342, 473
HhaI GCGC 1 cut(s) 364
Hin1II CATG 7 cut(s) 508, 616, 707, 799, 833, 876, 900
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HincII GTYRAC 1 cut(s) 711
HindII GTYRAC 1 cut(s) 711
HinfI GANTC 5 cut(s) 112, 329, 347, 406, 707
HpaII CCGG 5 cut(s) 61, 199, 258, 342, 473
Hpy166II GTNNAC 1 cut(s) 711
Hpy188I TCNGA 7 cut(s) 188, 411, 439, 586, 654, 818, 823
Hpy8I GTNNAC 1 cut(s) 711
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 107, 575
HpyCH4IV ACGT 2 cut(s) 177, 370
HpyCH4V TGCA 6 cut(s) 132, 395, 495, 518, 692, 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 63, 736
HpyF3I CTNAG 3 cut(s) 114, 170, 523
HpySE526I ACGT 2 cut(s) 177, 370
Hsp92II CATG 7 cut(s) 508, 616, 707, 799, 833, 876, 900
HspAI GCGC 1 cut(s) 362
Kpn2I TCCGGA 1 cut(s) 341
Ksp22I TGATCA 3 cut(s) 31, 439, 715
LmnI GCTCC 2 cut(s) 344, 852
Lsp1109I GCAGC 2 cut(s) 182, 479
LweI GCATC 2 cut(s) 349, 667
MaeI CTAG 5 cut(s) 120, 336, 680, 762, 786
MaeII ACGT 2 cut(s) 177, 370
MaeIII GTNAC 2 cut(s) 89, 569
MboII GAAGA 3 cut(s) 214, 222, 560
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 3 cut(s) 8, 322, 434
MhlI GDGCHC 2 cut(s) 816, 857
MluCI AATT 8 cut(s) 52, 285, 295, 306, 452, 464, 589, 847
MlyI GAGTC 3 cut(s) 106, 356, 716
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 4 cut(s) 179, 182, 206, 817
MroI TCCGGA 1 cut(s) 341
MseI TTAA 4 cut(s) 227, 561, 638, 845
MslI CAYNNNNRTG 1 cut(s) 672
MspI CCGG 5 cut(s) 61, 199, 258, 342, 473
MspR9I CCNGG 7 cut(s) 61, 259, 424, 459, 473, 474, 892
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 3 cut(s) 424, 459, 892
MwoI GCNNNNNNNGC 3 cut(s) 54, 63, 736
NciI CCSGG 4 cut(s) 61, 259, 473, 474
NdeI CATATG 2 cut(s) 44, 301
NlaIII CATG 7 cut(s) 508, 616, 707, 799, 833, 876, 900
NlaIV GGNNCC 4 cut(s) 166, 324, 598, 854
NmuCI GTSAC 1 cut(s) 569
NspI RCATGY 1 cut(s) 616
PagI TCATGA 2 cut(s) 703, 829
PciI ACATGT 1 cut(s) 612
PfeI GAWTC 2 cut(s) 329, 406
PflMI CCANNNNNTGG 1 cut(s) 878
PfoI TCCNGGA 2 cut(s) 422, 890
PkrI GCNGC 3 cut(s) 194, 197, 494
PleI GAGTC 3 cut(s) 106, 355, 715
PpsI GAGTC 3 cut(s) 106, 355, 715
Ppu21I YACGTR 1 cut(s) 371
PscI ACATGT 1 cut(s) 612
PshBI ATTAAT 1 cut(s) 638
Psp6I CCWGG 3 cut(s) 422, 457, 890
PspGI CCWGG 3 cut(s) 422, 457, 890
PspN4I GGNNCC 4 cut(s) 166, 324, 598, 854
PspPI GGNCC 2 cut(s) 153, 597
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 3 cut(s) 8, 322, 434
RsaI GTAC 5 cut(s) 125, 577, 617, 684, 700
RsaNI GTAC 5 cut(s) 124, 576, 616, 683, 699
RseI CAYNNNNRTG 1 cut(s) 672
SaqAI TTAA 4 cut(s) 227, 561, 638, 845
SatI GCNGC 3 cut(s) 193, 196, 493
Sau96I GGNCC 2 cut(s) 153, 597
ScaI AGTACT 2 cut(s) 577, 700
SchI GAGTC 3 cut(s) 106, 356, 716
ScrFI CCNGG 7 cut(s) 61, 259, 424, 459, 473, 474, 892
SduI GDGCHC 2 cut(s) 816, 857
SetI ASST 8 cut(s) 125, 180, 224, 341, 373, 494, 805, 843
SfaNI GCATC 2 cut(s) 349, 667
SfcI CTRYAG 2 cut(s) 103, 139
SinI GGWCC 2 cut(s) 153, 597
SmaI CCCGGG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 672
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 8 cut(s) 52, 285, 295, 306, 452, 464, 589, 847
SsiI CCGC 3 cut(s) 66, 162, 192
SspMI CTAG 5 cut(s) 120, 336, 680, 762, 786
StyD4I CCNGG 7 cut(s) 59, 257, 422, 457, 471, 472, 890
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 107, 575
TaiI ACGT 2 cut(s) 180, 373
TaqI TCGA 3 cut(s) 565, 642, 864
TasI AATT 8 cut(s) 52, 285, 295, 306, 452, 464, 589, 847
TatI WGTACW 4 cut(s) 575, 615, 682, 698
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 2 cut(s) 329, 406
Tru1I TTAA 4 cut(s) 227, 561, 638, 845
Tru9I TTAA 4 cut(s) 227, 561, 638, 845
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 2 cut(s) 195, 492
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 3 cut(s) 288, 306, 521
TspMI CCCGGG 1 cut(s) 472
TspRI CASTG 1 cut(s) 679
Van91I CCANNNNNTGG 1 cut(s) 878
VpaK11BI GGWCC 2 cut(s) 153, 597
VspI ATTAAT 1 cut(s) 638
XapI RAATTY 2 cut(s) 452, 464
XceI RCATGY 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 617
XmaI CCCGGG 1 cut(s) 472
XmaJI CCTAGG 1 cut(s) 119
XspI CTAG 5 cut(s) 120, 336, 680, 762, 786
ZrmI AGTACT 2 cut(s) 577, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.