Rroxscaffold_6G00405460

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016059
Physical Location & Seq
Forward (+)
27847480 .. 27851914
4435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405460.1

Sequence Viewer

Length: 1059 bp
ATGAAAGCGGAGGTGTGTAGAGCCGGTCTTCTTCTTGGTATACACCAAGGCTGGACGGAAATTGATATTGAAAGCGACTTTGCCATTCCGATTGCTGCTCTCAATAGTAAGGAGGTGAATTATTCGAAGGTAAGTCGAGTTTTGGATGATTATAAAGATTATCTATATGCTTTTCAATCAGTTAGAATTCGGCATATCTACCGTGAAGCAAATGGTGTTGCACATAGGCTTGCTCACCTTGCTAGTGTTGATTGTTTGACTCAGCCTAGGTACTTCTGCAAGGGCTGTAGGAGATATTGGACCAAAGGCGGGTCCCTCAGGAACGTCCCCGTCGGAGGCGGCTGCCGGGAACAGAACAGAAGAGGGTCAAGGTCGTTAAAGCTATCCACCAACACCACCACGGCTACCGGGAGTAATACTGTGAATAGTGGCACAAATGGGCATAATTCATATGGAACTAGTAGTTCATTGGATCCAGATTCTACTAGCTCCGGAGAGTCCAATCAGGATGCGCCACCACGTATTGATCTCGCAGTCGTTTATGCAAACTTCTTGAATCAGAAGCCAGTTTCCAGGAGTTCAGGATCTGATCAGTTGCCAGAATTGCCTGGGGAATTCAACCCGGGTTTAGATTTTTCAAGCTGCATAGCAAACATGAACATCAATGCAGGCTCAGGCTCAAGTATTCAGTTGATGGAAGAAAATGGTCTTAATGGATCAATAGGATGTCACAGTACTCTATCTGAAAATTGTGGGACCATCAATGACCACATGTACTTTGGTGGGTTAGACCCATTAATCGATCATCATCAGAAGCATCAAGATCACAGCAGTGATCTAGTACAATATGCAAGTAGTACTCATGAATCAACTGATCATTTTGGGTTGCCACCATTGCCAGACCAAGAGGTATTGTGGTCTAGTTCTCACGATCAAATGATGGCTAGTCCTATCATGCAACCTACCCCTGTGCTCGGATCAGAAGCTCATGATCCAAACCTGTTAAATTGGAGCTCCTTATTCGATTTACCATGTAATGGAAGTTTCTCCAGGACATGA

Protein Analysis

352

Amino Acids

38.38

Weight (kDa)

5.71

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 80 5.6e-11 Reverse transcriptase-like
Zn_ribbon_Dof PF02701 86 - 120 3.6e-16 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52440 AT3G52440
fragaria_vesca FvH4_6g20401
malus_domestica MD12G1041000.v1.1 MD14G1040400.v1.1
prunus_persica Prupe.7G093900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0476121
rosa_laevigata RLG00000023789
rosa_multiflora Rmu_sc0000114.1_g000027
rosa_roxburghii Rroxscaffold_6G00405460
rosa_rugosa Rorug03G0152900
rosa_samantha Rh3BG234200 Rh3CG229600 Rh3DG229600
rosa_wichuraiana Rw3G018540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AccB7I CCANNNNNTGG 1 cut(s) 1037
AccI GTMKAC 1 cut(s) 40
AccIII TCCGGA 1 cut(s) 491
AciI CCGC 3 cut(s) 8, 309, 339
AclWI GGATC 6 cut(s) 467, 480, 592, 724, 985, 986
AcsI RAATTY 2 cut(s) 186, 614
AfaI GTAC 5 cut(s) 272, 736, 776, 843, 859
AfiI CCNNNNNNNGG 4 cut(s) 309, 335, 974, 1037
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 5 cut(s) 71, 176, 556, 619, 639
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 3 cut(s) 572, 607, 1049
AleI CACNNNNGTG 1 cut(s) 831
AluBI AGCT 5 cut(s) 382, 489, 642, 986, 1014
AluI AGCT 5 cut(s) 382, 489, 642, 986, 1014
Alw21I GWGCWC 2 cut(s) 975, 1016
AlwI GGATC 6 cut(s) 467, 480, 592, 724, 985, 986
AlwNI CAGNNNCTG 1 cut(s) 587
Ama87I CYCGRG 1 cut(s) 622
Aor13HI TCCGGA 1 cut(s) 491
ApeKI GCWGC 3 cut(s) 95, 342, 642
ApoI RAATTY 2 cut(s) 186, 614
AseI ATTAAT 1 cut(s) 797
AspA2I CCTAGG 1 cut(s) 266
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 3 cut(s) 300, 312, 756
AsuC2I CCSGG 4 cut(s) 347, 409, 623, 624
AsuHPI GGTGA 2 cut(s) 127, 227
AsuII TTCGAA 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 622
AvaII GGWCC 3 cut(s) 300, 312, 756
AvrII CCTAGG 1 cut(s) 266
AxyI CCTNAGG 1 cut(s) 317
BamHI GGATCC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 1016
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 2 cut(s) 975, 1016
BbvI GCAGC 3 cut(s) 82, 329, 629
BccI CCATC 3 cut(s) 688, 767, 934
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 3 cut(s) 574, 609, 1051
BclI TGATCA 2 cut(s) 589, 874
BcnI CCSGG 4 cut(s) 347, 409, 623, 624
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 7 cut(s) 243, 267, 459, 486, 839, 921, 945
BfmI CTRYAG 1 cut(s) 286
BisI GCNGC 4 cut(s) 96, 340, 343, 643
BlnI CCTAGG 1 cut(s) 266
BlsI GCNGC 4 cut(s) 97, 341, 344, 644
BmcAI AGTACT 2 cut(s) 736, 859
Bme1390I CCNGG 7 cut(s) 347, 409, 574, 609, 623, 624, 1051
Bme18I GGWCC 3 cut(s) 300, 312, 756
BmeT110I CYCGRG 1 cut(s) 622
BmgT120I GGNCC 3 cut(s) 300, 312, 756
BmiI GGNNCC 4 cut(s) 313, 314, 474, 757
BmrFI CCNGG 7 cut(s) 347, 409, 574, 609, 623, 624, 1051
BmsI GCATC 2 cut(s) 499, 826
BpiI GAAGAC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 1033
Bpu10I CCTNAGC 1 cut(s) 673
Bpu14I TTCGAA 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 664
BpuMI CCSGG 4 cut(s) 347, 409, 623, 624
Bsa29I ATCGAT 1 cut(s) 801
BsaAI YACGTR 1 cut(s) 521
BsaBI GATNNNNATC 1 cut(s) 807
BsaJI CCNNGG 5 cut(s) 46, 266, 399, 608, 622
BsaWI WCCGGW 1 cut(s) 491
Bsc4I CCNNNNNNNGG 4 cut(s) 309, 335, 974, 1037
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 566
Bse21I CCTNAGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 893
Bse8I GATNNNNATC 1 cut(s) 807
BseAI TCCGGA 1 cut(s) 491
BseBI CCWGG 3 cut(s) 574, 609, 1051
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 5 cut(s) 46, 266, 399, 608, 622
BseGI GGATG 3 cut(s) 151, 514, 731
BseJI GATNNNNATC 1 cut(s) 807
BseLI CCNNNNNNNGG 4 cut(s) 309, 335, 974, 1037
BseMI GCAATG 1 cut(s) 893
BseMII CTCAG 3 cut(s) 275, 331, 687
BseNI ACTGG 1 cut(s) 566
BseXI GCAGC 3 cut(s) 82, 329, 629
BshVI ATCGAT 1 cut(s) 801
BsiHKAI GWGCWC 2 cut(s) 975, 1016
BsiHKCI CYCGRG 1 cut(s) 622
BsiSI CCGG 5 cut(s) 24, 346, 408, 492, 623
BslFI GGGAC 3 cut(s) 298, 311, 769
BslI CCNNNNNNNGG 4 cut(s) 309, 335, 974, 1037
BsmFI GGGAC 3 cut(s) 298, 311, 769
BsoBI CYCGRG 1 cut(s) 622
Bsp119I TTCGAA 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 975, 1016
Bsp13I TCCGGA 1 cut(s) 491
BspACI CCGC 3 cut(s) 8, 309, 339
BspCNI CTCAG 3 cut(s) 274, 330, 686
BspDI ATCGAT 1 cut(s) 801
BspEI TCCGGA 1 cut(s) 491
BspHI TCATGA 2 cut(s) 862, 988
BspLI GGNNCC 4 cut(s) 313, 314, 474, 757
BspPI GGATC 6 cut(s) 467, 480, 592, 724, 985, 986
BspT104I TTCGAA 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 893
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 5 cut(s) 46, 266, 399, 608, 622
BssNAI GTATAC 1 cut(s) 41
BssT1I CCWWGG 2 cut(s) 46, 266
Bst1107I GTATAC 1 cut(s) 41
Bst2UI CCWGG 3 cut(s) 574, 609, 1051
Bst4CI ACNGT 3 cut(s) 203, 421, 734
Bst6I CTCTTC 1 cut(s) 355
BstBAI YACGTR 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 231, 670
BstDEI CTNAG 3 cut(s) 261, 317, 673
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 3 cut(s) 151, 514, 731
BstHHI GCGC 1 cut(s) 514
BstMWI GCNNNNNNNGC 3 cut(s) 239, 604, 895
BstNI CCWGG 3 cut(s) 574, 609, 1051
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 7 cut(s) 345, 407, 572, 607, 621, 622, 1049
BstSFI CTRYAG 1 cut(s) 286
BstV1I GCAGC 3 cut(s) 82, 329, 629
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 2 cut(s) 472, 584
BstYI RGATCY 2 cut(s) 472, 584
BstZ17I GTATAC 1 cut(s) 41
Bsu15I ATCGAT 1 cut(s) 801
Bsu36I CCTNAGG 1 cut(s) 317
BsuTUI ATCGAT 1 cut(s) 801
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 3 cut(s) 151, 514, 731
BtsI GCAGTG 1 cut(s) 838
BtsIMutI CAGTG 1 cut(s) 838
Cac8I GCNNGC 2 cut(s) 231, 670
CaiI CAGNNNCTG 1 cut(s) 587
CciI TCATGA 2 cut(s) 862, 988
CfoI GCGC 1 cut(s) 514
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 3 cut(s) 300, 312, 756
Cfr9I CCCGGG 1 cut(s) 622
ClaI ATCGAT 1 cut(s) 801
Csp6I GTAC 5 cut(s) 271, 735, 775, 842, 858
CviAII CATG 7 cut(s) 655, 772, 863, 955, 989, 1032, 1056
CviQI GTAC 5 cut(s) 271, 735, 775, 842, 858
DdeI CTNAG 3 cut(s) 261, 317, 673
Eam1104I CTCTTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 355
Ecl136II GAGCTC 1 cut(s) 1014
Eco130I CCWWGG 2 cut(s) 46, 266
Eco24I GRGCYC 1 cut(s) 1016
Eco47I GGWCC 3 cut(s) 300, 312, 756
Eco53kI GAGCTC 1 cut(s) 1014
Eco81I CCTNAGG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 622
EcoICRI GAGCTC 1 cut(s) 1014
EcoO109I RGGNCCY 1 cut(s) 312
EcoRI GAATTC 2 cut(s) 186, 614
EcoRII CCWGG 3 cut(s) 572, 607, 1049
EcoT14I CCWWGG 2 cut(s) 46, 266
EcoT38I GRGCYC 1 cut(s) 1016
ErhI CCWWGG 2 cut(s) 46, 266
FaeI CATG 7 cut(s) 658, 775, 866, 958, 992, 1035, 1059
FaqI GGGAC 3 cut(s) 298, 311, 769
FatI CATG 7 cut(s) 654, 771, 862, 954, 988, 1031, 1055
FauI CCCGC 1 cut(s) 302
FauNDI CATATG 1 cut(s) 451
FbaI TGATCA 2 cut(s) 589, 874
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 4 cut(s) 96, 340, 343, 643
FokI GGATG 3 cut(s) 158, 521, 738
FriOI GRGCYC 1 cut(s) 1016
Fsp4HI GCNGC 4 cut(s) 96, 340, 343, 643
FspBI CTAG 7 cut(s) 243, 267, 459, 486, 839, 921, 945
GlaI GCGC 1 cut(s) 513
GluI GCNGC 4 cut(s) 96, 340, 343, 643
GsuI CTGGAG 1 cut(s) 1033
HapII CCGG 5 cut(s) 24, 346, 408, 492, 623
HhaI GCGC 1 cut(s) 514
Hin1II CATG 7 cut(s) 658, 775, 866, 958, 992, 1035, 1059
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HinfI GANTC 5 cut(s) 259, 479, 497, 556, 866
HpaII CCGG 5 cut(s) 24, 346, 408, 492, 623
HphI GGTGA 2 cut(s) 127, 227
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 8 cut(s) 90, 335, 561, 589, 745, 813, 977, 982
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 3 cut(s) 203, 421, 734
HpyCH4IV ACGT 2 cut(s) 324, 520
HpyCH4V TGCA 7 cut(s) 221, 279, 545, 645, 668, 851, 958
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 604, 895
HpyF3I CTNAG 3 cut(s) 261, 317, 673
HpySE526I ACGT 2 cut(s) 324, 520
Hsp92II CATG 7 cut(s) 658, 775, 866, 958, 992, 1035, 1059
HspAI GCGC 1 cut(s) 512
KflI GGGWCCC 1 cut(s) 312
Kpn2I TCCGGA 1 cut(s) 491
Ksp22I TGATCA 2 cut(s) 589, 874
LmnI GCTCC 3 cut(s) 494, 1011, 1019
Lsp1109I GCAGC 3 cut(s) 82, 329, 629
LweI GCATC 2 cut(s) 499, 826
MaeI CTAG 7 cut(s) 243, 267, 459, 486, 839, 921, 945
MaeII ACGT 2 cut(s) 324, 520
MaeIII GTNAC 1 cut(s) 728
MboII GAAGA 4 cut(s) 20, 23, 372, 710
MflI RGATCY 2 cut(s) 472, 584
MhlI GDGCHC 2 cut(s) 975, 1016
MluCI AATT 8 cut(s) 60, 118, 186, 445, 602, 614, 748, 1006
MlyI GAGTC 2 cut(s) 253, 506
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 6 cut(s) 4, 106, 326, 329, 356, 901
MroI TCCGGA 1 cut(s) 491
MseI TTAA 4 cut(s) 377, 711, 797, 1004
MslI CAYNNNNRTG 1 cut(s) 831
MspI CCGG 5 cut(s) 24, 346, 408, 492, 623
MspR9I CCNGG 7 cut(s) 347, 409, 574, 609, 623, 624, 1051
MvaI CCWGG 3 cut(s) 574, 609, 1051
MwoI GCNNNNNNNGC 3 cut(s) 239, 604, 895
NciI CCSGG 4 cut(s) 347, 409, 623, 624
NdeI CATATG 1 cut(s) 451
NlaIII CATG 7 cut(s) 658, 775, 866, 958, 992, 1035, 1059
NlaIV GGNNCC 4 cut(s) 313, 314, 474, 757
NmuCI GTSAC 1 cut(s) 728
NspI RCATGY 1 cut(s) 775
NspV TTCGAA 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 831
PagI TCATGA 2 cut(s) 862, 988
PciI ACATGT 1 cut(s) 771
PfeI GAWTC 3 cut(s) 479, 556, 866
PflMI CCANNNNNTGG 1 cut(s) 1037
PfoI TCCNGGA 2 cut(s) 572, 1049
PkrI GCNGC 4 cut(s) 97, 341, 344, 644
PleI GAGTC 2 cut(s) 253, 505
PpsI GAGTC 2 cut(s) 253, 505
Ppu21I YACGTR 1 cut(s) 521
PpuMI RGGWCCY 1 cut(s) 312
PscI ACATGT 1 cut(s) 771
PshBI ATTAAT 1 cut(s) 797
PsiI TTATAA 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 1016
Psp5II RGGWCCY 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 572, 607, 1049
PspGI CCWGG 3 cut(s) 572, 607, 1049
PspN4I GGNNCC 4 cut(s) 313, 314, 474, 757
PspPI GGNCC 3 cut(s) 300, 312, 756
PspPPI RGGWCCY 1 cut(s) 312
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 2 cut(s) 472, 584
RsaI GTAC 5 cut(s) 272, 736, 776, 843, 859
RsaNI GTAC 5 cut(s) 271, 735, 775, 842, 858
RseI CAYNNNNRTG 1 cut(s) 831
SacI GAGCTC 1 cut(s) 1016
SaqAI TTAA 4 cut(s) 377, 711, 797, 1004
SatI GCNGC 4 cut(s) 96, 340, 343, 643
Sau96I GGNCC 3 cut(s) 300, 312, 756
ScaI AGTACT 2 cut(s) 736, 859
SchI GAGTC 2 cut(s) 253, 506
ScrFI CCNGG 7 cut(s) 347, 409, 574, 609, 623, 624, 1051
SduI GDGCHC 2 cut(s) 975, 1016
SfaNI GCATC 2 cut(s) 499, 826
SfcI CTRYAG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 125
SinI GGWCC 3 cut(s) 300, 312, 756
SmaI CCCGGG 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 831
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 8 cut(s) 60, 118, 186, 445, 602, 614, 748, 1006
SsiI CCGC 3 cut(s) 8, 309, 339
SspMI CTAG 7 cut(s) 243, 267, 459, 486, 839, 921, 945
SstI GAGCTC 1 cut(s) 1016
StyD4I CCNGG 7 cut(s) 345, 407, 572, 607, 621, 622, 1049
StyI CCWWGG 2 cut(s) 46, 266
TaaI ACNGT 3 cut(s) 203, 421, 734
TaiI ACGT 2 cut(s) 327, 523
TaqI TCGA 4 cut(s) 125, 136, 801, 1023
TasI AATT 8 cut(s) 60, 118, 186, 445, 602, 614, 748, 1006
TatI WGTACW 4 cut(s) 734, 774, 841, 857
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 3 cut(s) 479, 556, 866
Tru1I TTAA 4 cut(s) 377, 711, 797, 1004
Tru9I TTAA 4 cut(s) 377, 711, 797, 1004
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 3 cut(s) 95, 342, 642
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 5 cut(s) 17, 438, 456, 671, 879
TspGWI ACGGA 1 cut(s) 71
TspMI CCCGGG 1 cut(s) 622
TspRI CASTG 1 cut(s) 838
Van91I CCANNNNNTGG 1 cut(s) 1037
VpaK11BI GGWCC 3 cut(s) 300, 312, 756
VspI ATTAAT 1 cut(s) 797
XapI RAATTY 2 cut(s) 186, 614
XceI RCATGY 1 cut(s) 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 776
XmaI CCCGGG 1 cut(s) 622
XmaJI CCTAGG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 40
XspI CTAG 7 cut(s) 243, 267, 459, 486, 839, 921, 945
ZrmI AGTACT 2 cut(s) 736, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.