AT3G52470

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017146
Physical Location & Seq
Forward (+)
19450506 .. 19451982
1477 bp
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UTR
Exon/CDS
Intron
AT3G52470.1

Sequence Viewer

Length: 627 bp
ATGTCAAAAGATTGCGGTAACCACGGTGGTGGCAAAGAAGTAGTCGTCCGGAAACTCTGCGCCGCCATAATCGCCTTCATCGTAATAGTTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCCACTAAACCAAGATTCGTCCTCCAAGACGCCACCGTCTACGCCTTCAACCTCTCGCAACCAAACCTCCTTACTTCAAACTTCCAAGTCACAATCGCATCTCGTAACCCTAACTCCAAGATCGGAATCTACTACGACCGTCTCCACGTCTACGCTACATACATGAACCAGCAGATCACTCTACGTACGGCGATTCCTCCGACGTATCAAGGCCACAAAGAAGTCAACGTTTGGTCTCCTTTCGTCTACGGGACTGCGGTTCCCATCGCACCTTACAACTCCGTCGCTTTGGGAGAGGAGAAAGATCGTGGATTTGTAGGGTTGATGATACGCGCCGATGGGACCGTGAGGTGGAAAGTGAGGACTTTGATCACCGGAAAATATCATATCCATGTTCGGTGTCAGGCGTTCATCAATCTTGGAAACAAAGCTGCTGGTGTTCTTGTCGGTGATAACGCCGTTAAGTACACGTTGGCTAATAAATGCAGTGTGAACGTTTAG

Protein Analysis

208

Amino Acids

23.1

Weight (kDa)

9.8

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 73 - 177 6.9e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52470
fragaria_vesca FvH4_1g09370
malus_domestica MD00G1128800.v1.1
rosa_chinensis RchiOBHm_Chr2g0095911
rosa_laevigata RLG00000016606
rosa_multiflora Rmu_co8128420.1_g000001
rosa_roxburghii Rroxscaffold_2G00145970
rosa_rugosa Rorug02G0053900
rosa_samantha Rh2AG103000 Rh2BG104400 Rh2CG106900 Rh2DG104600
rosa_wichuraiana Rw2G007830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccI GTMKAC 3 cut(s) 165, 276, 372
AccII CGCG 1 cut(s) 459
AccIII TCCGGA 1 cut(s) 48
AciI CCGC 3 cut(s) 15, 63, 383
AclI AACGTT 2 cut(s) 354, 621
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 2 cut(s) 313, 593
AfiI CCNNNNNNNGG 2 cut(s) 112, 477
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 2 cut(s) 175, 204
AjiI CACGTC 1 cut(s) 274
AleI CACNNNNGTG 1 cut(s) 27
AluBI AGCT 1 cut(s) 557
AluI AGCT 1 cut(s) 557
Alw26I GTCTC 2 cut(s) 272, 366
Aor13HI TCCGGA 1 cut(s) 48
AoxI GGCC 2 cut(s) 125, 337
ApeKI GCWGC 1 cut(s) 557
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspLEI GCGC 2 cut(s) 62, 461
AspS9I GGNCC 2 cut(s) 126, 468
AsuHPI GGTGA 3 cut(s) 88, 490, 587
AvaII GGWCC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 544
BccI CCATC 3 cut(s) 107, 398, 458
BceAI ACGGC 2 cut(s) 330, 569
BclI TGATCA 1 cut(s) 495
BcoDI GTCTC 2 cut(s) 272, 366
BfaI CTAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 63, 558
BlsI GCNGC 2 cut(s) 64, 559
Bme18I GGWCC 1 cut(s) 468
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 126, 468
BmiI GGNNCC 2 cut(s) 387, 469
BmsI GCATC 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 2 cut(s) 48, 500
BsaXI ACNNNNNCTCC 4 cut(s) 177, 207, 224, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 477
Bse8I GATNNNNATC 1 cut(s) 251
BseAI TCCGGA 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 112, 477
BseMII CTCAG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 1 cut(s) 544
Bsh1236I CGCG 1 cut(s) 459
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 2 cut(s) 127, 339
BsiEI CGRYCG 1 cut(s) 265
BsiSI CCGG 2 cut(s) 49, 501
BsiWI CGTACG 1 cut(s) 311
BslFI GGGAC 2 cut(s) 391, 481
BslI CCNNNNNNNGG 2 cut(s) 112, 477
BsmAI GTCTC 2 cut(s) 272, 366
BsmBI CGTCTC 1 cut(s) 272
BsmFI GGGAC 2 cut(s) 391, 481
BsnI GGCC 2 cut(s) 127, 339
Bso31I GGTCTC 1 cut(s) 366
Bsp13I TCCGGA 1 cut(s) 48
Bsp143I GATC 4 cut(s) 246, 300, 430, 495
BspACI CCGC 3 cut(s) 15, 63, 383
BspANI GGCC 2 cut(s) 127, 339
BspCNI CTCAG 1 cut(s) 135
BspEI TCCGGA 1 cut(s) 48
BspFNI CGCG 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 387, 469
BspTNI GGTCTC 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 4 cut(s) 246, 300, 430, 495
BssNI GRCGYC 1 cut(s) 156
Bst4CI ACNGT 4 cut(s) 26, 163, 266, 472
BstACI GRCGYC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 122
BstDSI CCRYGG 1 cut(s) 22
BstEII GGTNACC 1 cut(s) 17
BstFNI CGCG 1 cut(s) 459
BstHHI GCGC 2 cut(s) 62, 461
BstKTI GATC 4 cut(s) 249, 303, 433, 498
BstMAI GTCTC 2 cut(s) 272, 366
BstMBI GATC 4 cut(s) 246, 300, 430, 495
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstPI GGTNACC 1 cut(s) 17
BstSNI TACGTA 1 cut(s) 311
BstUI CGCG 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 544
BstXI CCANNNNNNTGG 1 cut(s) 29
BsuRI GGCC 2 cut(s) 127, 339
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 376
BtrI CACGTC 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 1 cut(s) 619
CfoI GCGC 2 cut(s) 62, 461
Cfr13I GGNCC 2 cut(s) 126, 468
CseI GACGC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 312, 592
CviAII CATG 2 cut(s) 289, 518
CviJI RGCY 4 cut(s) 127, 339, 557, 602
CviKI_1 RGCY 4 cut(s) 127, 339, 557, 602
CviQI GTAC 2 cut(s) 312, 592
DdeI CTNAG 1 cut(s) 122
DpnI GATC 4 cut(s) 248, 302, 432, 497
DpnII GATC 4 cut(s) 246, 300, 430, 495
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eco105I TACGTA 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 468
Eco91I GGTNACC 1 cut(s) 17
EcoO65I GGTNACC 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 2 cut(s) 292, 521
FaiI YATR 6 cut(s) 68, 119, 286, 290, 513, 519
FaqI GGGAC 2 cut(s) 391, 481
FatI CATG 2 cut(s) 288, 517
FbaI TGATCA 1 cut(s) 495
FblI GTMKAC 3 cut(s) 165, 276, 372
Fnu4HI GCNGC 2 cut(s) 63, 558
Fsp4HI GCNGC 2 cut(s) 63, 558
FspBI CTAG 1 cut(s) 107
GlaI GCGC 2 cut(s) 61, 460
GluI GCNGC 2 cut(s) 63, 558
HaeIII GGCC 2 cut(s) 127, 339
HapII CCGG 2 cut(s) 49, 501
HgaI GACGC 1 cut(s) 164
HhaI GCGC 2 cut(s) 62, 461
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 2 cut(s) 292, 521
Hin6I GCGC 2 cut(s) 60, 459
HinP1I GCGC 2 cut(s) 60, 459
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 3 cut(s) 141, 252, 319
HpaII CCGG 2 cut(s) 49, 501
HphI GGTGA 3 cut(s) 88, 490, 587
Hpy166II GTNNAC 6 cut(s) 166, 277, 352, 373, 594, 619
Hpy188I TCNGA 2 cut(s) 251, 327
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 6 cut(s) 166, 277, 352, 373, 594, 619
Hpy99I CGWCG 2 cut(s) 331, 413
HpyAV CCTTC 2 cut(s) 85, 181
HpyCH4III ACNGT 4 cut(s) 26, 163, 266, 472
HpyCH4IV ACGT 6 cut(s) 273, 310, 329, 354, 596, 621
HpyCH4V TGCA 1 cut(s) 612
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 6 cut(s) 273, 310, 329, 354, 596, 621
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 2 cut(s) 292, 521
HspAI GCGC 2 cut(s) 60, 459
Kpn2I TCCGGA 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 4 cut(s) 246, 300, 430, 495
LpnPI CCDG 6 cut(s) 62, 109, 308, 514, 515, 546
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 1 cut(s) 233
MaeI CTAG 1 cut(s) 107
MaeII ACGT 6 cut(s) 273, 310, 329, 354, 596, 621
MaeIII GTNAC 3 cut(s) 17, 214, 230
MalI GATC 4 cut(s) 248, 302, 432, 497
MboI GATC 4 cut(s) 246, 300, 430, 495
MboII GAAGA 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 7 cut(s) 158, 188, 203, 333, 415, 468, 480
MroI TCCGGA 1 cut(s) 48
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 2 cut(s) 27, 516
MspI CCGG 2 cut(s) 49, 501
MvnI CGCG 1 cut(s) 459
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 4 cut(s) 246, 300, 430, 495
NlaIII CATG 2 cut(s) 292, 521
NlaIV GGNNCC 2 cut(s) 387, 469
NmuCI GTSAC 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 3 cut(s) 141, 252, 319
Pfl23II CGTACG 1 cut(s) 311
PkrI GCNGC 2 cut(s) 64, 559
Ppu21I YACGTR 1 cut(s) 311
Psp1406I AACGTT 2 cut(s) 354, 621
PspEI GGTNACC 1 cut(s) 17
PspLI CGTACG 1 cut(s) 311
PspN4I GGNNCC 2 cut(s) 387, 469
PspPI GGNCC 2 cut(s) 126, 468
RsaI GTAC 2 cut(s) 313, 593
RsaNI GTAC 2 cut(s) 312, 592
RseI CAYNNNNRTG 2 cut(s) 27, 516
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 2 cut(s) 63, 558
Sau3AI GATC 4 cut(s) 246, 300, 430, 495
Sau96I GGNCC 2 cut(s) 126, 468
SfaNI GCATC 1 cut(s) 233
SinI GGWCC 1 cut(s) 468
SmiMI CAYNNNNRTG 2 cut(s) 27, 516
SnaBI TACGTA 1 cut(s) 311
SsiI CCGC 3 cut(s) 15, 63, 383
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 4 cut(s) 26, 163, 266, 472
TaiI ACGT 6 cut(s) 276, 313, 332, 357, 599, 624
TatI WGTACW 1 cut(s) 591
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 3 cut(s) 141, 252, 319
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 67, 305, 526
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 468
XmiI GTMKAC 3 cut(s) 165, 276, 372
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.