RLG00000016606

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017146
Physical Location & Seq
Forward (+)
8173166 .. 8173819
654 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016606

Sequence Viewer

Length: 654 bp
ATGGGTGACGACGAAGCAGCTCCTGCTCCTGCGCCTGCGCCTGGTTTTAGCATCCCTAAACCCGTCATCTACGGCGTCCTCGTCTTCTTCTGCCTCTTCGGCCTCGTAGTCCTGTCCATCTTTCTCAGTCTCCGCCCCTCCAAGCCCAGCTTCACAATCCAAGACATCACCGTCTCCTCCTTCAATGTCTCCACCAGCCAACCCTACCGCCTCTCCACCAACATGCAAGTCACCATCTCCTCTCGGAACGCCATGTCCCGAGTGGCGATCATCTACGGGGAGATGGAGCTCTACGCCACGTACCGCAACGAGCAGATCACGTTCCGGTACTCCCTCCCCGTGACGTACCAGGAGCACAATGAGTTCGTGGTGTGGTCACCCTACCTGGAGGGCCACGTTGCGGCTATTTCCCCGATTTCGGGGCCCGTTCTGATGCAGGATCTGAACTACGGGGCGGTGTTGGTGATCATCAAGATTGAAGGGCGGTTGAAGTTTAGAGTGGGTGCGTGGACGTCGGCGTACTACCGGTTGTACGGGCACTGCCCGGCGATGATCCAGTTGGGGGACATGGACACCAAGAAGGATTTCGCAGTGTCTGCAAAAGAGTTCAAGTTTCTGTTGGTGCAAAATTGTCATGTCGAGATTGCTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

218

Amino Acids

24.29

Weight (kDa)

7.7

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52470
fragaria_vesca FvH4_1g09370
malus_domestica MD00G1128800.v1.1
rosa_chinensis RchiOBHm_Chr2g0095911
rosa_laevigata RLG00000016606
rosa_multiflora Rmu_co8128420.1_g000001
rosa_roxburghii Rroxscaffold_2G00145970
rosa_rugosa Rorug02G0053900
rosa_samantha Rh2AG103000 Rh2BG104400 Rh2CG106900 Rh2DG104600
rosa_wichuraiana Rw2G007830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 1 cut(s) 515
AciI CCGC 6 cut(s) 133, 208, 304, 401, 455, 484
AclWI GGATC 2 cut(s) 447, 547
AcyI GRCGYC 2 cut(s) 75, 512
AfaI GTAC 5 cut(s) 302, 329, 347, 521, 533
AfiI CCNNNNNNNGG 5 cut(s) 41, 400, 418, 419, 562
AgeI ACCGGT 1 cut(s) 525
AgsI TTSAA 4 cut(s) 184, 479, 490, 610
AjnI CCWGG 3 cut(s) 40, 348, 384
AjuI GAANNNNNNNTTGG 4 cut(s) 134, 166, 569, 601
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 3 cut(s) 20, 150, 289
AluI AGCT 3 cut(s) 20, 150, 289
Alw21I GWGCWC 2 cut(s) 291, 357
Alw26I GTCTC 3 cut(s) 134, 178, 193
AlwI GGATC 2 cut(s) 447, 547
AlwNI CAGNNNCTG 3 cut(s) 23, 442, 596
Ama87I CYCGRG 1 cut(s) 258
AoxI GGCC 3 cut(s) 100, 391, 422
ApaI GGGCCC 1 cut(s) 426
ApeKI GCWGC 1 cut(s) 17
AsiGI ACCGGT 1 cut(s) 525
Asp700I GAANNNNTTC 1 cut(s) 584
AspLEI GCGC 2 cut(s) 34, 40
AspS9I GGNCC 3 cut(s) 391, 422, 423
AsuC2I CCSGG 1 cut(s) 545
AsuHPI GGTGA 5 cut(s) 17, 160, 223, 369, 475
AvaI CYCGRG 1 cut(s) 258
BaeGI GKGCMC 2 cut(s) 426, 540
BanII GRGCYC 2 cut(s) 291, 426
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 291, 357
BbvI GCAGC 1 cut(s) 29
BccI CCATC 3 cut(s) 125, 242, 277
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 3 cut(s) 42, 350, 386
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 1 cut(s) 545
BcoDI GTCTC 3 cut(s) 134, 178, 193
BglI GCCNNNNNGGC 1 cut(s) 99
BisI GCNGC 2 cut(s) 18, 402
BlsI GCNGC 2 cut(s) 19, 403
Bme1390I CCNGG 4 cut(s) 42, 350, 386, 545
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 3 cut(s) 391, 422, 423
BmiI GGNNCC 2 cut(s) 423, 424
BmrFI CCNGG 4 cut(s) 42, 350, 386, 545
BmsI GCATC 2 cut(s) 60, 423
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 545
BsaAI YACGTR 1 cut(s) 300
BsaHI GRCGYC 2 cut(s) 75, 512
BsaWI WCCGGW 2 cut(s) 324, 525
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 400, 418, 419, 562
Bse118I RCCGGY 1 cut(s) 525
Bse1I ACTGG 1 cut(s) 556
BseBI CCWGG 3 cut(s) 42, 350, 386
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 5 cut(s) 41, 400, 418, 419, 562
BseMII CTCAG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 556
BseRI GAGGAG 2 cut(s) 166, 229
BseSI GKGCMC 2 cut(s) 426, 540
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 146
BshFI GGCC 3 cut(s) 102, 393, 424
BshTI ACCGGT 1 cut(s) 525
BsiHKAI GWGCWC 2 cut(s) 291, 357
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 3 cut(s) 325, 526, 545
BslFI GGGAC 2 cut(s) 241, 578
BslI CCNNNNNNNGG 5 cut(s) 41, 400, 418, 419, 562
BsmAI GTCTC 3 cut(s) 134, 178, 193
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 2 cut(s) 241, 578
BsnI GGCC 3 cut(s) 102, 393, 424
BsoBI CYCGRG 1 cut(s) 258
Bsp120I GGGCCC 1 cut(s) 422
Bsp1286I GDGCHC 4 cut(s) 291, 357, 426, 540
Bsp143I GATC 5 cut(s) 267, 315, 439, 465, 552
BspACI CCGC 6 cut(s) 133, 208, 304, 401, 455, 484
BspANI GGCC 3 cut(s) 102, 393, 424
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 423, 424
BspPI GGATC 2 cut(s) 447, 547
BsrFI RCCGGY 1 cut(s) 525
BsrI ACTGG 1 cut(s) 556
BssAI RCCGGY 1 cut(s) 525
BssMI GATC 5 cut(s) 267, 315, 439, 465, 552
BssNI GRCGYC 2 cut(s) 75, 512
Bst2UI CCWGG 3 cut(s) 42, 350, 386
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 2 cut(s) 75, 512
BstAPI GCANNNNNTGC 2 cut(s) 23, 596
BstBAI YACGTR 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 125
BstEII GGTNACC 1 cut(s) 375
BstF5I GGATG 1 cut(s) 51
BstHHI GCGC 2 cut(s) 34, 40
BstKTI GATC 5 cut(s) 270, 318, 442, 468, 555
BstMAI GTCTC 3 cut(s) 134, 178, 193
BstMBI GATC 5 cut(s) 267, 315, 439, 465, 552
BstMWI GCNNNNNNNGC 3 cut(s) 23, 99, 596
BstNI CCWGG 3 cut(s) 42, 350, 386
BstNSI RCATGY 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 375
BstSCI CCNGG 4 cut(s) 40, 348, 384, 543
BstSLI GKGCMC 2 cut(s) 426, 540
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BsuRI GGCC 3 cut(s) 102, 393, 424
BtgZI GCGATG 1 cut(s) 563
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 2 cut(s) 538, 597
BtsIMutI CAGTG 2 cut(s) 538, 597
Cac8I GCNNGC 1 cut(s) 36
CaiI CAGNNNCTG 3 cut(s) 23, 442, 596
CfoI GCGC 2 cut(s) 34, 40
Cfr10I RCCGGY 1 cut(s) 525
Cfr13I GGNCC 3 cut(s) 391, 422, 423
CseI GACGC 1 cut(s) 64
Csp6I GTAC 5 cut(s) 301, 328, 346, 520, 532
CspAI ACCGGT 1 cut(s) 525
CviAII CATG 4 cut(s) 223, 253, 568, 635
CviJI RGCY 9 cut(s) 20, 102, 145, 150, 198, 289, 393, 404, 424
CviKI_1 RGCY 9 cut(s) 20, 102, 145, 150, 198, 289, 393, 404, 424
CviQI GTAC 5 cut(s) 301, 328, 346, 520, 532
DdeI CTNAG 1 cut(s) 125
DpnI GATC 5 cut(s) 269, 317, 441, 467, 554
DpnII GATC 5 cut(s) 267, 315, 439, 465, 552
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
EciI GGCGGA 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 289
Eco24I GRGCYC 2 cut(s) 291, 426
Eco53kI GAGCTC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 422
EcoO65I GGTNACC 1 cut(s) 375
EcoRII CCWGG 3 cut(s) 40, 348, 384
EcoT38I GRGCYC 2 cut(s) 291, 426
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 4 cut(s) 226, 256, 571, 638
FaiI YATR 4 cut(s) 224, 254, 569, 636
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 2 cut(s) 241, 578
FatI CATG 4 cut(s) 222, 252, 567, 634
FbaI TGATCA 1 cut(s) 465
Fnu4HI GCNGC 2 cut(s) 18, 402
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 2 cut(s) 291, 426
Fsp4HI GCNGC 2 cut(s) 18, 402
GlaI GCGC 2 cut(s) 33, 39
GluI GCNGC 2 cut(s) 18, 402
GsaI CCCAGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 3 cut(s) 102, 393, 424
HapII CCGG 3 cut(s) 325, 526, 545
HgaI GACGC 1 cut(s) 64
HhaI GCGC 2 cut(s) 34, 40
Hin1I GRCGYC 2 cut(s) 75, 512
Hin1II CATG 4 cut(s) 226, 256, 571, 638
Hin6I GCGC 2 cut(s) 32, 38
HinP1I GCGC 2 cut(s) 32, 38
HpaII CCGG 3 cut(s) 325, 526, 545
HphI GGTGA 5 cut(s) 17, 160, 223, 369, 475
Hpy166II GTNNAC 1 cut(s) 510
Hpy188I TCNGA 3 cut(s) 246, 432, 444
Hpy188III TCNNGA 3 cut(s) 258, 472, 640
Hpy8I GTNNAC 1 cut(s) 510
Hpy99I CGWCG 2 cut(s) 14, 517
HpyAV CCTTC 3 cut(s) 190, 473, 574
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 5 cut(s) 299, 320, 344, 396, 512
HpyCH4V TGCA 4 cut(s) 226, 436, 599, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 99, 596
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 5 cut(s) 299, 320, 344, 396, 512
Hsp92I GRCGYC 2 cut(s) 75, 512
Hsp92II CATG 4 cut(s) 226, 256, 571, 638
HspAI GCGC 2 cut(s) 32, 38
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 5 cut(s) 267, 315, 439, 465, 552
LmnI GCTCC 4 cut(s) 25, 31, 286, 352
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 2 cut(s) 60, 423
MaeII ACGT 5 cut(s) 299, 320, 344, 396, 512
MaeIII GTNAC 4 cut(s) 5, 229, 340, 375
MalI GATC 5 cut(s) 269, 317, 441, 467, 554
MboI GATC 5 cut(s) 267, 315, 439, 465, 552
MboII GAAGA 3 cut(s) 76, 79, 88
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 4 cut(s) 291, 357, 426, 540
MluCI AATT 1 cut(s) 628
MnlI CCTC 9 cut(s) 89, 104, 113, 148, 187, 221, 250, 344, 382
MroXI GAANNNNTTC 1 cut(s) 584
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 3 cut(s) 325, 526, 545
MspR9I CCNGG 4 cut(s) 42, 350, 386, 545
MvaI CCWGG 3 cut(s) 42, 350, 386
MwoI GCNNNNNNNGC 3 cut(s) 23, 99, 596
NciI CCSGG 1 cut(s) 545
NdeII GATC 5 cut(s) 267, 315, 439, 465, 552
NlaIII CATG 4 cut(s) 226, 256, 571, 638
NlaIV GGNNCC 2 cut(s) 423, 424
NmuCI GTSAC 4 cut(s) 5, 229, 340, 375
NspI RCATGY 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 584
PinAI ACCGGT 1 cut(s) 525
PkrI GCNGC 2 cut(s) 19, 403
Ppu21I YACGTR 1 cut(s) 300
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 40, 348, 384
PspEI GGTNACC 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 3 cut(s) 40, 348, 384
PspN4I GGNNCC 2 cut(s) 423, 424
PspOMI GGGCCC 1 cut(s) 422
PspPI GGNCC 3 cut(s) 391, 422, 423
PstNI CAGNNNCTG 3 cut(s) 23, 442, 596
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 5 cut(s) 302, 329, 347, 521, 533
RsaNI GTAC 5 cut(s) 301, 328, 346, 520, 532
RseI CAYNNNNRTG 1 cut(s) 221
SacI GAGCTC 1 cut(s) 291
SatI GCNGC 2 cut(s) 18, 402
Sau3AI GATC 5 cut(s) 267, 315, 439, 465, 552
Sau96I GGNCC 3 cut(s) 391, 422, 423
ScrFI CCNGG 4 cut(s) 42, 350, 386, 545
SduI GDGCHC 4 cut(s) 291, 357, 426, 540
SetI ASST 9 cut(s) 22, 152, 291, 302, 323, 347, 387, 399, 515
SfaNI GCATC 2 cut(s) 60, 423
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 1 cut(s) 628
SsiI CCGC 6 cut(s) 133, 208, 304, 401, 455, 484
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 4 cut(s) 40, 348, 384, 543
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 5 cut(s) 302, 323, 347, 399, 515
TaqI TCGA 1 cut(s) 639
TasI AATT 1 cut(s) 628
TauI GCSGC 1 cut(s) 404
TscAI CASTG 2 cut(s) 545, 597
TseFI GTSAC 4 cut(s) 5, 229, 340, 375
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 4 cut(s) 5, 229, 340, 375
TspRI CASTG 2 cut(s) 545, 597
XceI RCATGY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 584
ZraI GACGTC 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.