Rw2G007830

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017146
Physical Location & Seq
Forward (+)
7680292 .. 7680939
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G007830.1

Sequence Viewer

Length: 594 bp
ATGGGTGATGAGGAGAAAGCTCCTGTGCCTGTACCTGATTTTAGCATCCCTAAACCCGTCATCTACGGCGTCCTCGGCTTCCTCGGCGTCCTCGGCCTCGTAGTCCTGACCATCTTTCTCAGTCTCCGCCCCTCCAAGCCCAGCTTCACCATCCAAGACATCACCGTCTCCTCCTTCAATGTCTCCACCAGCCAACCCTACCGCCTCTCCACCAACATGCAAGTGGAGCTCTACGCCACGTACCGTGACGAGCAGATCACGTTTCGGTACTCCCTCCCCGTGACGTACCAGGAGCACAATGAGTTCGTGGTGTGGTCACCCTACCTGGAGGGCCACGTTGAGGCTATTTCCCCGATTTCGGGGCCCCTTCTGATGCAGGATCTGAACTACGGGGCGGTGTTGGTGATCATCAAGATTGAAGGGCGGTTGAAGTTTAGAGTGGGTGGGTGGACGTCTGCGTACTACCGGTTGTACGGGCACTGCCCGGCGATGATCCAGTTGGGGGACATGGACACCAAGAAGGATTTCGCAGTGTCTGCAAAAGAGTTCAAGTTTCTGTTGGTTCAAAATTGTCATGTCGAGATTGCTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

197

Amino Acids

22.23

Weight (kDa)

6.08

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52470
fragaria_vesca FvH4_1g09370
malus_domestica MD00G1128800.v1.1
rosa_chinensis RchiOBHm_Chr2g0095911
rosa_laevigata RLG00000016606
rosa_multiflora Rmu_co8128420.1_g000001
rosa_roxburghii Rroxscaffold_2G00145970
rosa_rugosa Rorug02G0053900
rosa_samantha Rh2AG103000 Rh2BG104400 Rh2CG106900 Rh2DG104600
rosa_wichuraiana Rw2G007830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AatII GACGTC 1 cut(s) 455
AciI CCGC 4 cut(s) 127, 202, 395, 424
AclWI GGATC 2 cut(s) 387, 487
AcyI GRCGYC 3 cut(s) 69, 87, 452
AfaI GTAC 6 cut(s) 33, 242, 269, 287, 461, 473
AfiI CCNNNNNNNGG 4 cut(s) 340, 358, 359, 502
AgeI ACCGGT 1 cut(s) 465
AgsI TTSAA 5 cut(s) 178, 419, 430, 550, 566
AjnI CCWGG 2 cut(s) 288, 324
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 509, 541
AluBI AGCT 3 cut(s) 20, 144, 229
AluI AGCT 3 cut(s) 20, 144, 229
Alw21I GWGCWC 2 cut(s) 231, 297
Alw26I GTCTC 3 cut(s) 128, 172, 187
AlwI GGATC 2 cut(s) 387, 487
AlwNI CAGNNNCTG 2 cut(s) 382, 536
AoxI GGCC 3 cut(s) 94, 331, 362
ApaI GGGCCC 1 cut(s) 366
AsiGI ACCGGT 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 524
AspS9I GGNCC 3 cut(s) 331, 362, 363
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 5 cut(s) 17, 139, 154, 309, 415
BaeGI GKGCMC 2 cut(s) 366, 480
BanII GRGCYC 2 cut(s) 231, 366
Bbv12I GWGCWC 2 cut(s) 231, 297
BccI CCATC 2 cut(s) 119, 158
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 2 cut(s) 290, 326
BclI TGATCA 1 cut(s) 405
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 3 cut(s) 128, 172, 187
Bme1390I CCNGG 3 cut(s) 290, 326, 485
BmgT120I GGNCC 3 cut(s) 331, 362, 363
BmiI GGNNCC 3 cut(s) 363, 364, 365
BmrFI CCNGG 3 cut(s) 290, 326, 485
BmsI GCATC 2 cut(s) 54, 363
BpmI CTGGAG 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 485
BsaAI YACGTR 1 cut(s) 240
BsaHI GRCGYC 3 cut(s) 69, 87, 452
BsaJI CCNNGG 3 cut(s) 73, 82, 91
BsaWI WCCGGW 1 cut(s) 465
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 4 cut(s) 340, 358, 359, 502
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 1 cut(s) 496
BseBI CCWGG 2 cut(s) 290, 326
BseDI CCNNGG 3 cut(s) 73, 82, 91
BseGI GGATG 2 cut(s) 45, 150
BseLI CCNNNNNNNGG 4 cut(s) 340, 358, 359, 502
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 496
BseRI GAGGAG 2 cut(s) 26, 160
BseSI GKGCMC 2 cut(s) 366, 480
BseYI CCCAGC 1 cut(s) 140
BshFI GGCC 3 cut(s) 96, 333, 364
BshTI ACCGGT 1 cut(s) 465
BsiHKAI GWGCWC 2 cut(s) 231, 297
BsiSI CCGG 2 cut(s) 466, 485
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 4 cut(s) 340, 358, 359, 502
BsmAI GTCTC 3 cut(s) 128, 172, 187
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 3 cut(s) 96, 333, 364
Bsp120I GGGCCC 1 cut(s) 362
Bsp1286I GDGCHC 4 cut(s) 231, 297, 366, 480
Bsp143I GATC 4 cut(s) 255, 379, 405, 492
BspACI CCGC 4 cut(s) 127, 202, 395, 424
BspANI GGCC 3 cut(s) 96, 333, 364
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 363, 364, 365
BspPI GGATC 2 cut(s) 387, 487
BsrFI RCCGGY 1 cut(s) 465
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 73, 82, 91
BssMI GATC 4 cut(s) 255, 379, 405, 492
BssNI GRCGYC 3 cut(s) 69, 87, 452
Bst2UI CCWGG 2 cut(s) 290, 326
Bst4CI ACNGT 2 cut(s) 166, 245
BstACI GRCGYC 3 cut(s) 69, 87, 452
BstAPI GCANNNNNTGC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 119
BstEII GGTNACC 1 cut(s) 315
BstF5I GGATG 2 cut(s) 45, 150
BstKTI GATC 4 cut(s) 258, 382, 408, 495
BstMAI GTCTC 3 cut(s) 128, 172, 187
BstMBI GATC 4 cut(s) 255, 379, 405, 492
BstMWI GCNNNNNNNGC 5 cut(s) 75, 84, 93, 226, 536
BstNI CCWGG 2 cut(s) 290, 326
BstNSI RCATGY 1 cut(s) 220
BstPI GGTNACC 1 cut(s) 315
BstSCI CCNGG 3 cut(s) 288, 324, 483
BstSLI GKGCMC 2 cut(s) 366, 480
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 3 cut(s) 96, 333, 364
BtgZI GCGATG 1 cut(s) 503
BtsCI GGATG 2 cut(s) 45, 150
BtsI GCAGTG 2 cut(s) 478, 537
BtsIMutI CAGTG 2 cut(s) 478, 537
CaiI CAGNNNCTG 2 cut(s) 382, 536
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 3 cut(s) 331, 362, 363
CseI GACGC 2 cut(s) 58, 76
Csp6I GTAC 6 cut(s) 32, 241, 268, 286, 460, 472
CspAI ACCGGT 1 cut(s) 465
CviAII CATG 3 cut(s) 217, 508, 575
CviQI GTAC 6 cut(s) 32, 241, 268, 286, 460, 472
DdeI CTNAG 1 cut(s) 119
DpnI GATC 4 cut(s) 257, 381, 407, 494
DpnII GATC 4 cut(s) 255, 379, 405, 492
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 2 cut(s) 231, 366
Eco53kI GAGCTC 1 cut(s) 229
Eco91I GGTNACC 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 2 cut(s) 362, 363
EcoO65I GGTNACC 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 288, 324
EcoT38I GRGCYC 2 cut(s) 231, 366
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 3 cut(s) 220, 511, 578
FaiI YATR 3 cut(s) 218, 509, 576
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 518
FatI CATG 3 cut(s) 216, 507, 574
FbaI TGATCA 1 cut(s) 405
FokI GGATG 2 cut(s) 32, 137
FriOI GRGCYC 2 cut(s) 231, 366
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 3 cut(s) 96, 333, 364
HapII CCGG 2 cut(s) 466, 485
HgaI GACGC 2 cut(s) 58, 76
Hin1I GRCGYC 3 cut(s) 69, 87, 452
Hin1II CATG 3 cut(s) 220, 511, 578
HpaII CCGG 2 cut(s) 466, 485
HphI GGTGA 5 cut(s) 17, 139, 154, 309, 415
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 2 cut(s) 372, 384
Hpy188III TCNNGA 3 cut(s) 106, 412, 580
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 4 cut(s) 184, 377, 413, 514
HpyCH4III ACNGT 2 cut(s) 166, 245
HpyCH4IV ACGT 5 cut(s) 239, 260, 284, 336, 452
HpyCH4V TGCA 3 cut(s) 220, 376, 539
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 84, 93, 226, 536
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 5 cut(s) 239, 260, 284, 336, 452
Hsp92I GRCGYC 3 cut(s) 69, 87, 452
Hsp92II CATG 3 cut(s) 220, 511, 578
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 4 cut(s) 255, 379, 405, 492
LmnI GCTCC 3 cut(s) 25, 226, 292
LweI GCATC 2 cut(s) 54, 363
MaeII ACGT 5 cut(s) 239, 260, 284, 336, 452
MaeIII GTNAC 3 cut(s) 245, 280, 315
MalI GATC 4 cut(s) 257, 381, 407, 494
MboI GATC 4 cut(s) 255, 379, 405, 492
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 4 cut(s) 231, 297, 366, 480
MluCI AATT 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 524
MslI CAYNNNNRTG 2 cut(s) 215, 221
MspI CCGG 2 cut(s) 466, 485
MspR9I CCNGG 3 cut(s) 290, 326, 485
MvaI CCWGG 2 cut(s) 290, 326
MwoI GCNNNNNNNGC 5 cut(s) 75, 84, 93, 226, 536
NciI CCSGG 1 cut(s) 485
NdeII GATC 4 cut(s) 255, 379, 405, 492
NlaIII CATG 3 cut(s) 220, 511, 578
NlaIV GGNNCC 3 cut(s) 363, 364, 365
NmeAIII GCCGAG 3 cut(s) 54, 63, 72
NmuCI GTSAC 3 cut(s) 245, 280, 315
NspI RCATGY 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 524
PinAI ACCGGT 1 cut(s) 465
Ppu21I YACGTR 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 288, 324
PspEI GGTNACC 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 2 cut(s) 288, 324
PspN4I GGNNCC 3 cut(s) 363, 364, 365
PspOMI GGGCCC 1 cut(s) 362
PspPI GGNCC 3 cut(s) 331, 362, 363
PstNI CAGNNNCTG 2 cut(s) 382, 536
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 6 cut(s) 33, 242, 269, 287, 461, 473
RsaNI GTAC 6 cut(s) 32, 241, 268, 286, 460, 472
RseI CAYNNNNRTG 2 cut(s) 215, 221
SacI GAGCTC 1 cut(s) 231
Sau3AI GATC 4 cut(s) 255, 379, 405, 492
Sau96I GGNCC 3 cut(s) 331, 362, 363
ScrFI CCNGG 3 cut(s) 290, 326, 485
SduI GDGCHC 4 cut(s) 231, 297, 366, 480
SfaNI GCATC 2 cut(s) 54, 363
SmiMI CAYNNNNRTG 2 cut(s) 215, 221
Sse9I AATT 1 cut(s) 568
SsiI CCGC 4 cut(s) 127, 202, 395, 424
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 3 cut(s) 288, 324, 483
TaaI ACNGT 2 cut(s) 166, 245
TaiI ACGT 5 cut(s) 242, 263, 287, 339, 455
TaqI TCGA 1 cut(s) 579
TasI AATT 1 cut(s) 568
TscAI CASTG 2 cut(s) 485, 537
TseFI GTSAC 3 cut(s) 245, 280, 315
Tsp45I GTSAC 3 cut(s) 245, 280, 315
TspRI CASTG 2 cut(s) 485, 537
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmnI GAANNNNTTC 1 cut(s) 524
ZraI GACGTC 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.