Rmu_co8128420.1_g000001

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8128420.1
OG0017146
Physical Location & Seq
Forward (+)
1 .. 516
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8128420.1_g000001.1.cds

Sequence Viewer

Length: 516 bp
tccaagcccagcttcaccatccaagacatcaccgtctcctccttcaatgtctccaccagccaaccctaccgcctctccaccaacatgcaagtcaccatctcctctcggaacaccatgtcccgagtggcgatcatctacggggaggtggagctctacgccacgtaccgtgacgagcagatcacgtttcggtactccctccccgtgacgtaccaggagcacaatgagttcgtggtgtggtcaccctacctggagggccacgttgaggctatttccccgatttcggggccccttctgatgcaggatctgaactacggggcggtgttggtgatcatcaagattgaagggcggttgaagtttagagtgggtgggtggacgtctgcgtactaccggttgtacgggcactgcccggcgatgatccagttgggggacatggacaccaagaaggatttcgcagtgtctgcaaaagagttcaagtttctgttggtgcaaaattgtcatgtcgagattgctcggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

171

Amino Acids

19.54

Weight (kDa)

6.88

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52470
fragaria_vesca FvH4_1g09370
malus_domestica MD00G1128800.v1.1
rosa_chinensis RchiOBHm_Chr2g0095911
rosa_laevigata RLG00000016606
rosa_multiflora Rmu_co8128420.1_g000001
rosa_roxburghii Rroxscaffold_2G00145970
rosa_rugosa Rorug02G0053900
rosa_samantha Rh2AG103000 Rh2BG104400 Rh2CG106900 Rh2DG104600
rosa_wichuraiana Rw2G007830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AatII GACGTC 1 cut(s) 377
AciI CCGC 3 cut(s) 70, 317, 346
AclWI GGATC 2 cut(s) 309, 409
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 5 cut(s) 164, 191, 209, 383, 395
AfiI CCNNNNNNNGG 4 cut(s) 262, 280, 281, 424
AgeI ACCGGT 1 cut(s) 387
AgsI TTSAA 4 cut(s) 46, 341, 352, 472
AjnI CCWGG 2 cut(s) 210, 246
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 431, 463
AloI GAACNNNNNNTCC 2 cut(s) 101, 133
AluBI AGCT 2 cut(s) 12, 151
AluI AGCT 2 cut(s) 12, 151
Alw21I GWGCWC 2 cut(s) 153, 219
Alw26I GTCTC 2 cut(s) 40, 55
AlwI GGATC 2 cut(s) 309, 409
AlwNI CAGNNNCTG 2 cut(s) 304, 458
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 2 cut(s) 253, 284
ApaI GGGCCC 1 cut(s) 288
AsiGI ACCGGT 1 cut(s) 387
Asp700I GAANNNNTTC 1 cut(s) 446
AspS9I GGNCC 3 cut(s) 253, 284, 285
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 5 cut(s) 7, 22, 85, 231, 337
AvaI CYCGRG 1 cut(s) 120
BaeGI GKGCMC 2 cut(s) 288, 402
BanII GRGCYC 2 cut(s) 153, 288
Bbv12I GWGCWC 2 cut(s) 153, 219
BccI CCATC 2 cut(s) 26, 104
BciT130I CCWGG 2 cut(s) 212, 248
BclI TGATCA 1 cut(s) 327
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 2 cut(s) 40, 55
Bme1390I CCNGG 3 cut(s) 212, 248, 407
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 3 cut(s) 253, 284, 285
BmiI GGNNCC 3 cut(s) 285, 286, 287
BmrFI CCNGG 3 cut(s) 212, 248, 407
BmsI GCATC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 407
BsaAI YACGTR 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 374
BsaWI WCCGGW 1 cut(s) 387
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 280, 281, 424
Bse118I RCCGGY 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 418
BseBI CCWGG 2 cut(s) 212, 248
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 4 cut(s) 262, 280, 281, 424
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 2 cut(s) 28, 91
BseSI GKGCMC 2 cut(s) 288, 402
BseYI CCCAGC 1 cut(s) 8
BshFI GGCC 2 cut(s) 255, 286
BshTI ACCGGT 1 cut(s) 387
BsiHKAI GWGCWC 2 cut(s) 153, 219
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 2 cut(s) 388, 407
BslFI GGGAC 2 cut(s) 103, 440
BslI CCNNNNNNNGG 4 cut(s) 262, 280, 281, 424
BsmAI GTCTC 2 cut(s) 40, 55
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 2 cut(s) 103, 440
BsnI GGCC 2 cut(s) 255, 286
BsoBI CYCGRG 1 cut(s) 120
Bsp120I GGGCCC 1 cut(s) 284
Bsp1286I GDGCHC 4 cut(s) 153, 219, 288, 402
Bsp143I GATC 5 cut(s) 129, 177, 301, 327, 414
BspACI CCGC 3 cut(s) 70, 317, 346
BspANI GGCC 2 cut(s) 255, 286
BspLI GGNNCC 3 cut(s) 285, 286, 287
BspPI GGATC 2 cut(s) 309, 409
BsrFI RCCGGY 1 cut(s) 387
BsrI ACTGG 1 cut(s) 418
BssAI RCCGGY 1 cut(s) 387
BssMI GATC 5 cut(s) 129, 177, 301, 327, 414
BssNI GRCGYC 1 cut(s) 374
Bst2UI CCWGG 2 cut(s) 212, 248
Bst4CI ACNGT 2 cut(s) 34, 167
BstACI GRCGYC 1 cut(s) 374
BstAPI GCANNNNNTGC 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 162
BstEII GGTNACC 1 cut(s) 237
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 5 cut(s) 132, 180, 304, 330, 417
BstMAI GTCTC 2 cut(s) 40, 55
BstMBI GATC 5 cut(s) 129, 177, 301, 327, 414
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 2 cut(s) 212, 248
BstNSI RCATGY 1 cut(s) 88
BstPI GGTNACC 1 cut(s) 237
BstSCI CCNGG 3 cut(s) 210, 246, 405
BstSLI GKGCMC 2 cut(s) 288, 402
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 2 cut(s) 255, 286
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 1 cut(s) 18
BtsI GCAGTG 2 cut(s) 400, 459
BtsIMutI CAGTG 2 cut(s) 400, 459
CaiI CAGNNNCTG 2 cut(s) 304, 458
Cfr10I RCCGGY 1 cut(s) 387
Cfr13I GGNCC 3 cut(s) 253, 284, 285
Csp6I GTAC 5 cut(s) 163, 190, 208, 382, 394
CspAI ACCGGT 1 cut(s) 387
CviAII CATG 4 cut(s) 85, 115, 430, 497
CviJI RGCY 7 cut(s) 7, 12, 60, 151, 255, 266, 286
CviKI_1 RGCY 7 cut(s) 7, 12, 60, 151, 255, 266, 286
CviQI GTAC 5 cut(s) 163, 190, 208, 382, 394
DpnI GATC 5 cut(s) 131, 179, 303, 329, 416
DpnII GATC 5 cut(s) 129, 177, 301, 327, 414
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 2 cut(s) 153, 288
Eco53kI GAGCTC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 120
Eco91I GGTNACC 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 151
EcoO109I RGGNCCY 2 cut(s) 284, 285
EcoO65I GGTNACC 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 210, 246
EcoT38I GRGCYC 2 cut(s) 153, 288
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 4 cut(s) 88, 118, 433, 500
FaiI YATR 4 cut(s) 86, 116, 431, 498
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 2 cut(s) 103, 440
FatI CATG 4 cut(s) 84, 114, 429, 496
FbaI TGATCA 1 cut(s) 327
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 2 cut(s) 153, 288
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 2 cut(s) 255, 286
HapII CCGG 2 cut(s) 388, 407
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 4 cut(s) 88, 118, 433, 500
HpaII CCGG 2 cut(s) 388, 407
HphI GGTGA 5 cut(s) 7, 22, 85, 231, 337
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 3 cut(s) 108, 294, 306
Hpy188III TCNNGA 3 cut(s) 120, 334, 502
Hpy8I GTNNAC 1 cut(s) 372
HpyAV CCTTC 4 cut(s) 52, 299, 335, 436
HpyCH4III ACNGT 2 cut(s) 34, 167
HpyCH4IV ACGT 5 cut(s) 161, 182, 206, 258, 374
HpyCH4V TGCA 4 cut(s) 88, 298, 461, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpySE526I ACGT 5 cut(s) 161, 182, 206, 258, 374
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 4 cut(s) 88, 118, 433, 500
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 5 cut(s) 129, 177, 301, 327, 414
LmnI GCTCC 2 cut(s) 148, 214
LweI GCATC 1 cut(s) 285
MaeII ACGT 5 cut(s) 161, 182, 206, 258, 374
MaeIII GTNAC 4 cut(s) 91, 167, 202, 237
MalI GATC 5 cut(s) 131, 179, 303, 329, 416
MboI GATC 5 cut(s) 129, 177, 301, 327, 414
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 4 cut(s) 153, 219, 288, 402
MluCI AATT 1 cut(s) 490
MnlI CCTC 7 cut(s) 49, 83, 112, 136, 206, 244, 256
MroXI GAANNNNTTC 1 cut(s) 446
MslI CAYNNNNRTG 1 cut(s) 83
MspI CCGG 2 cut(s) 388, 407
MspR9I CCNGG 3 cut(s) 212, 248, 407
MvaI CCWGG 2 cut(s) 212, 248
MwoI GCNNNNNNNGC 1 cut(s) 458
NciI CCSGG 1 cut(s) 407
NdeII GATC 5 cut(s) 129, 177, 301, 327, 414
NlaIII CATG 4 cut(s) 88, 118, 433, 500
NlaIV GGNNCC 3 cut(s) 285, 286, 287
NmuCI GTSAC 4 cut(s) 91, 167, 202, 237
NspI RCATGY 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 446
PinAI ACCGGT 1 cut(s) 387
Ppu21I YACGTR 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 210, 246
PspEI GGTNACC 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 2 cut(s) 210, 246
PspN4I GGNNCC 3 cut(s) 285, 286, 287
PspOMI GGGCCC 1 cut(s) 284
PspPI GGNCC 3 cut(s) 253, 284, 285
PstNI CAGNNNCTG 2 cut(s) 304, 458
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 5 cut(s) 164, 191, 209, 383, 395
RsaNI GTAC 5 cut(s) 163, 190, 208, 382, 394
RseI CAYNNNNRTG 1 cut(s) 83
SacI GAGCTC 1 cut(s) 153
Sau3AI GATC 5 cut(s) 129, 177, 301, 327, 414
Sau96I GGNCC 3 cut(s) 253, 284, 285
ScrFI CCNGG 3 cut(s) 212, 248, 407
SduI GDGCHC 4 cut(s) 153, 219, 288, 402
SetI ASST 9 cut(s) 14, 147, 153, 164, 185, 209, 249, 261, 377
SfaNI GCATC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 1 cut(s) 490
SsiI CCGC 3 cut(s) 70, 317, 346
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 210, 246, 405
TaaI ACNGT 2 cut(s) 34, 167
TaiI ACGT 5 cut(s) 164, 185, 209, 261, 377
TaqI TCGA 1 cut(s) 501
TasI AATT 1 cut(s) 490
TscAI CASTG 2 cut(s) 407, 459
TseFI GTSAC 4 cut(s) 91, 167, 202, 237
Tsp45I GTSAC 4 cut(s) 91, 167, 202, 237
TspRI CASTG 2 cut(s) 407, 459
XceI RCATGY 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 446
ZraI GACGTC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.