Rroxscaffold_2G00145970

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017146
Physical Location & Seq
Reverse (-)
83811000 .. 83811647
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145970.1

Sequence Viewer

Length: 648 bp
ATGGGTGACGACGACAAAGCTCCTGCGCCTGCACCTGGTTTTAGCATCCCTATACCCGTCATCTACAGCGTCGTCGGCTTCCTCTGCGTCTTCGGCCTCGTAGTCCTGATCATCTTTCTCAGTCTCCGCCCCTCCAAGCCCAGCTTCACCATCCAAGACATCACCGTCTCCTCCTTCAATGTCTCCACCAGCCAACCCTACCTCCTCTCCACCAACATGCAAGTCACCATCTCCTCTCGGAACACCATGTCCCGAGTGGCGATCATCTACGGGGAGATGGAGCTCTACGCCACATACCGCAACGAGCAGATCACGTTCCGGTACTCCCTCCCCGTGACGTACCAGGAGCACAATGAGTTCGTGGTGTGGTCACCCTACCTGGAGGGCCACGTTGCGGCTATTTCCCCGATTTCGGGGCCCGTTCTGATGCAGGATCTGAACTACGGGGCGGTGTTGGTGATCATCAAGATTGAAGGGCCGTTGAAGTTTAGAGTGGGTGCGTGGACGTCTGCGGACTACCGGTTGTACGGGCACTGCCCGGCGATGATCCAGTTGGGGGACATGGACACCAAGAAGGATTTCGCAGTGTCTGCAAAAGAGTTCAAGTTTCTGTTGGTGCAAAATTGTCATGTCGAGATTGCTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

215

Amino Acids

23.99

Weight (kDa)

6.06

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52470
fragaria_vesca FvH4_1g09370
malus_domestica MD00G1128800.v1.1
rosa_chinensis RchiOBHm_Chr2g0095911
rosa_laevigata RLG00000016606
rosa_multiflora Rmu_co8128420.1_g000001
rosa_roxburghii Rroxscaffold_2G00145970
rosa_rugosa Rorug02G0053900
rosa_samantha Rh2AG103000 Rh2BG104400 Rh2CG106900 Rh2DG104600
rosa_wichuraiana Rw2G007830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AatII GACGTC 1 cut(s) 509
AciI CCGC 5 cut(s) 127, 298, 395, 449, 512
AclWI GGATC 2 cut(s) 441, 541
AcyI GRCGYC 1 cut(s) 506
AfaI GTAC 3 cut(s) 323, 341, 527
AfiI CCNNNNNNNGG 5 cut(s) 35, 394, 412, 413, 556
AgeI ACCGGT 1 cut(s) 519
AgsI TTSAA 4 cut(s) 178, 473, 484, 604
AjnI CCWGG 3 cut(s) 34, 342, 378
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 563, 595
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 20, 144, 283
AluI AGCT 3 cut(s) 20, 144, 283
Alw21I GWGCWC 2 cut(s) 285, 351
Alw26I GTCTC 3 cut(s) 128, 172, 187
AlwI GGATC 2 cut(s) 441, 541
AlwNI CAGNNNCTG 2 cut(s) 436, 590
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 4 cut(s) 94, 385, 416, 476
ApaI GGGCCC 1 cut(s) 420
AsiGI ACCGGT 1 cut(s) 519
Asp700I GAANNNNTTC 1 cut(s) 578
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 4 cut(s) 385, 416, 417, 476
AsuC2I CCSGG 1 cut(s) 539
AsuHPI GGTGA 6 cut(s) 17, 139, 154, 217, 363, 469
AvaI CYCGRG 1 cut(s) 252
BaeGI GKGCMC 2 cut(s) 420, 534
BanII GRGCYC 2 cut(s) 285, 420
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 285, 351
BccI CCATC 3 cut(s) 158, 236, 271
BceAI ACGGC 1 cut(s) 463
BciT130I CCWGG 3 cut(s) 36, 344, 380
BclI TGATCA 2 cut(s) 108, 459
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 3 cut(s) 128, 172, 187
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme1390I CCNGG 4 cut(s) 36, 344, 380, 539
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 4 cut(s) 385, 416, 417, 476
BmiI GGNNCC 2 cut(s) 417, 418
BmrFI CCNGG 4 cut(s) 36, 344, 380, 539
BmsI GCATC 2 cut(s) 54, 417
BpiI GAAGAC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 539
BsaHI GRCGYC 1 cut(s) 506
BsaWI WCCGGW 2 cut(s) 318, 519
BsaXI ACNNNNNCTCC 4 cut(s) 186, 191, 216, 221
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 394, 412, 413, 556
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 1 cut(s) 550
BseBI CCWGG 3 cut(s) 36, 344, 380
BseGI GGATG 2 cut(s) 45, 150
BseLI CCNNNNNNNGG 5 cut(s) 35, 394, 412, 413, 556
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 550
BseRI GAGGAG 3 cut(s) 160, 194, 223
BseSI GKGCMC 2 cut(s) 420, 534
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 15
BshFI GGCC 4 cut(s) 96, 387, 418, 478
BshTI ACCGGT 1 cut(s) 519
BsiHKAI GWGCWC 2 cut(s) 285, 351
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 3 cut(s) 319, 520, 539
BslFI GGGAC 2 cut(s) 235, 572
BslI CCNNNNNNNGG 5 cut(s) 35, 394, 412, 413, 556
BsmAI GTCTC 3 cut(s) 128, 172, 187
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 2 cut(s) 235, 572
BsnI GGCC 4 cut(s) 96, 387, 418, 478
BsoBI CYCGRG 1 cut(s) 252
Bsp120I GGGCCC 1 cut(s) 416
Bsp1286I GDGCHC 4 cut(s) 285, 351, 420, 534
Bsp143I GATC 6 cut(s) 108, 261, 309, 433, 459, 546
BspACI CCGC 5 cut(s) 127, 298, 395, 449, 512
BspANI GGCC 4 cut(s) 96, 387, 418, 478
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 417, 418
BspPI GGATC 2 cut(s) 441, 541
BsrFI RCCGGY 1 cut(s) 519
BsrI ACTGG 1 cut(s) 550
BssAI RCCGGY 1 cut(s) 519
BssMI GATC 6 cut(s) 108, 261, 309, 433, 459, 546
BssNI GRCGYC 1 cut(s) 506
Bst2UI CCWGG 3 cut(s) 36, 344, 380
Bst4CI ACNGT 1 cut(s) 166
BstACI GRCGYC 1 cut(s) 506
BstAPI GCANNNNNTGC 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 119
BstEII GGTNACC 1 cut(s) 369
BstF5I GGATG 2 cut(s) 45, 150
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 6 cut(s) 111, 264, 312, 436, 462, 549
BstMAI GTCTC 3 cut(s) 128, 172, 187
BstMBI GATC 6 cut(s) 108, 261, 309, 433, 459, 546
BstMWI GCNNNNNNNGC 4 cut(s) 75, 84, 93, 590
BstNI CCWGG 3 cut(s) 36, 344, 380
BstNSI RCATGY 1 cut(s) 220
BstPI GGTNACC 1 cut(s) 369
BstSCI CCNGG 4 cut(s) 34, 342, 378, 537
BstSFI CTRYAG 1 cut(s) 64
BstSLI GKGCMC 2 cut(s) 420, 534
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 4 cut(s) 96, 387, 418, 478
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 2 cut(s) 45, 150
BtsI GCAGTG 2 cut(s) 532, 591
BtsIMutI CAGTG 2 cut(s) 532, 591
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 2 cut(s) 436, 590
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 4 cut(s) 385, 416, 417, 476
CseI GACGC 2 cut(s) 58, 76
CsiI ACCWGGT 1 cut(s) 34
Csp6I GTAC 3 cut(s) 322, 340, 526
CspAI ACCGGT 1 cut(s) 519
CviAII CATG 4 cut(s) 217, 247, 562, 629
CviQI GTAC 3 cut(s) 322, 340, 526
DdeI CTNAG 1 cut(s) 119
DpnI GATC 6 cut(s) 110, 263, 311, 435, 461, 548
DpnII GATC 6 cut(s) 108, 261, 309, 433, 459, 546
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 283
Eco24I GRGCYC 2 cut(s) 285, 420
Eco53kI GAGCTC 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 369
EcoRII CCWGG 3 cut(s) 34, 342, 378
EcoT38I GRGCYC 2 cut(s) 285, 420
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 4 cut(s) 220, 250, 565, 632
FaiI YATR 6 cut(s) 53, 218, 248, 295, 563, 630
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 2 cut(s) 235, 572
FatI CATG 4 cut(s) 216, 246, 561, 628
FbaI TGATCA 2 cut(s) 108, 459
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 2 cut(s) 32, 137
FriOI GRGCYC 2 cut(s) 285, 420
Fsp4HI GCNGC 1 cut(s) 396
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 396
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 4 cut(s) 96, 387, 418, 478
HapII CCGG 3 cut(s) 319, 520, 539
HgaI GACGC 2 cut(s) 58, 76
HhaI GCGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 4 cut(s) 220, 250, 565, 632
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HpaII CCGG 3 cut(s) 319, 520, 539
HphI GGTGA 6 cut(s) 17, 139, 154, 217, 363, 469
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 3 cut(s) 240, 426, 438
Hpy188III TCNNGA 4 cut(s) 106, 252, 466, 634
Hpy8I GTNNAC 1 cut(s) 504
Hpy99I CGWCG 3 cut(s) 14, 74, 77
HpyAV CCTTC 3 cut(s) 184, 467, 568
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 4 cut(s) 314, 338, 390, 506
HpyCH4V TGCA 5 cut(s) 32, 220, 430, 593, 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 84, 93, 590
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 4 cut(s) 314, 338, 390, 506
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 4 cut(s) 220, 250, 565, 632
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 2 cut(s) 108, 459
Kzo9I GATC 6 cut(s) 108, 261, 309, 433, 459, 546
LmnI GCTCC 3 cut(s) 25, 280, 346
LweI GCATC 2 cut(s) 54, 417
MabI ACCWGGT 1 cut(s) 34
MaeII ACGT 4 cut(s) 314, 338, 390, 506
MaeIII GTNAC 4 cut(s) 5, 223, 334, 369
MalI GATC 6 cut(s) 110, 263, 311, 435, 461, 548
MboI GATC 6 cut(s) 108, 261, 309, 433, 459, 546
MboII GAAGA 1 cut(s) 82
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 4 cut(s) 285, 351, 420, 534
MluCI AATT 1 cut(s) 622
MnlI CCTC 9 cut(s) 92, 107, 142, 181, 212, 215, 244, 338, 376
MroXI GAANNNNTTC 1 cut(s) 578
MslI CAYNNNNRTG 1 cut(s) 215
MspI CCGG 3 cut(s) 319, 520, 539
MspR9I CCNGG 4 cut(s) 36, 344, 380, 539
MvaI CCWGG 3 cut(s) 36, 344, 380
MwoI GCNNNNNNNGC 4 cut(s) 75, 84, 93, 590
NciI CCSGG 1 cut(s) 539
NdeII GATC 6 cut(s) 108, 261, 309, 433, 459, 546
NlaIII CATG 4 cut(s) 220, 250, 565, 632
NlaIV GGNNCC 2 cut(s) 417, 418
NmuCI GTSAC 4 cut(s) 5, 223, 334, 369
NspI RCATGY 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 578
PinAI ACCGGT 1 cut(s) 519
PkrI GCNGC 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 285
Psp6I CCWGG 3 cut(s) 34, 342, 378
PspEI GGTNACC 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 3 cut(s) 34, 342, 378
PspN4I GGNNCC 2 cut(s) 417, 418
PspOMI GGGCCC 1 cut(s) 416
PspPI GGNCC 4 cut(s) 385, 416, 417, 476
PstNI CAGNNNCTG 2 cut(s) 436, 590
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 3 cut(s) 323, 341, 527
RsaNI GTAC 3 cut(s) 322, 340, 526
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 1 cut(s) 285
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 6 cut(s) 108, 261, 309, 433, 459, 546
Sau96I GGNCC 4 cut(s) 385, 416, 417, 476
ScrFI CCNGG 4 cut(s) 36, 344, 380, 539
SduI GDGCHC 4 cut(s) 285, 351, 420, 534
SexAI ACCWGGT 1 cut(s) 34
SfaNI GCATC 2 cut(s) 54, 417
SfcI CTRYAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 1 cut(s) 622
SsiI CCGC 5 cut(s) 127, 298, 395, 449, 512
SstI GAGCTC 1 cut(s) 285
StyD4I CCNGG 4 cut(s) 34, 342, 378, 537
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 4 cut(s) 317, 341, 393, 509
TaqI TCGA 1 cut(s) 633
TasI AATT 1 cut(s) 622
TauI GCSGC 1 cut(s) 398
TscAI CASTG 2 cut(s) 539, 591
TseFI GTSAC 4 cut(s) 5, 223, 334, 369
Tsp45I GTSAC 4 cut(s) 5, 223, 334, 369
TspRI CASTG 2 cut(s) 539, 591
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 578
ZraI GACGTC 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.