FvH4_1g09370

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017146
Physical Location & Seq
Forward (+)
5030973 .. 5031614
642 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09370.t1

Sequence Viewer

Length: 642 bp
ATGCCTGACGAAGAGAGTGCTGCCCTCCCTGCAGCTGGTTCCAACACCACTAAATACGTCATCGGTGGCATCATCGGCCTCGTCGTTGTCGTCGGGCTCGTAGCATTCATCTCCGGGCTCAGTCTCCGCCCCTCCAAACCCAGCTTCACCCTCCAAGACATCACCGTCTCGTCCTTCAACGTCTCCACCACCCAACCCTACCTCCTATCCACCAACATGCAAGTCACCATCTCCACGCAGAACAGCATGCCCCACGTGGGCATCATCTACGAGAAGGTGGAGCTCTACGCCACGTACCGCGACGAGCAAATCACGTTTCGGTACACCCTCCCCAAGACGTACCAAGAGCACAGTGAGGTCGTGGTGTGGTCGCCCTATTTAGAAGGTCACACCACGCCTATTTCCCCGATATCGGGGCCTGTTCTGATGCAGGATCTGAACTACGGGGCAGTGCTGGTGATGGTCAAGATTGACGGGCGGATAAAGTTTAGGGTGGCTCAGTGGACGTCGGGGATTTATCGGCTGTACGTGCACTGCCCGGCGATGATCCAGTTGGGGGACATGAACACCGACAAGGAATTCGCAGCGTCTGCAAAAGAGTTCAAGTTCACGTTGGTACAAAATTGTCACGTCGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

214

Amino Acids

23.63

Weight (kDa)

5.93

Isoelectric Point (pI)

28.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52470
fragaria_vesca FvH4_1g09370
malus_domestica MD00G1128800.v1.1
rosa_chinensis RchiOBHm_Chr2g0095911
rosa_laevigata RLG00000016606
rosa_multiflora Rmu_co8128420.1_g000001
rosa_roxburghii Rroxscaffold_2G00145970
rosa_rugosa Rorug02G0053900
rosa_samantha Rh2AG103000 Rh2BG104400 Rh2CG106900 Rh2DG104600
rosa_wichuraiana Rw2G007830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AatII GACGTC 1 cut(s) 509
AccII CGCG 1 cut(s) 300
AciI CCGC 3 cut(s) 127, 298, 478
AclWI GGATC 2 cut(s) 441, 541
AcsI RAATTY 1 cut(s) 578
AcvI CACGTG 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 506
AfaI GTAC 5 cut(s) 296, 323, 341, 527, 618
AfiI CCNNNNNNNGG 5 cut(s) 35, 257, 412, 413, 556
AgsI TTSAA 2 cut(s) 178, 604
AjiI CACGTC 1 cut(s) 631
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 3 cut(s) 35, 144, 283
AluI AGCT 3 cut(s) 35, 144, 283
Alw21I GWGCWC 3 cut(s) 285, 351, 534
Alw26I GTCTC 3 cut(s) 128, 172, 187
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 2 cut(s) 441, 541
AlwNI CAGNNNCTG 2 cut(s) 436, 590
AoxI GGCC 2 cut(s) 76, 416
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 3 cut(s) 20, 32, 584
ApoI RAATTY 1 cut(s) 578
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 2 cut(s) 115, 539
AsuHPI GGTGA 4 cut(s) 139, 154, 217, 469
BaeGI GKGCMC 1 cut(s) 534
BanII GRGCYC 3 cut(s) 99, 120, 285
BbrPI CACGTG 1 cut(s) 256
Bbv12I GWGCWC 3 cut(s) 285, 351, 534
BbvI GCAGC 3 cut(s) 7, 44, 596
BccI CCATC 2 cut(s) 236, 454
BcgI CGANNNNNNTGC 1 cut(s) 33
BcnI CCSGG 2 cut(s) 115, 539
BcoDI GTCTC 3 cut(s) 128, 172, 187
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 3 cut(s) 21, 33, 585
BlsI GCNGC 3 cut(s) 22, 34, 586
Bme1390I CCNGG 2 cut(s) 115, 539
BmgBI CACGTC 1 cut(s) 631
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 2 cut(s) 40, 417
BmrFI CCNGG 2 cut(s) 115, 539
BmsI GCATC 3 cut(s) 78, 270, 417
BpuMI CCSGG 2 cut(s) 115, 539
BsaAI YACGTR 3 cut(s) 256, 294, 529
BsaHI GRCGYC 1 cut(s) 506
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 257, 412, 413, 556
Bse1I ACTGG 1 cut(s) 550
BseLI CCNNNNNNNGG 5 cut(s) 35, 257, 412, 413, 556
BseMII CTCAG 2 cut(s) 133, 512
BseNI ACTGG 1 cut(s) 550
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 3 cut(s) 7, 44, 596
BseYI CCCAGC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 2 cut(s) 78, 418
BsiHKAI GWGCWC 3 cut(s) 285, 351, 534
BsiSI CCGG 2 cut(s) 114, 539
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 5 cut(s) 35, 257, 412, 413, 556
BsmAI GTCTC 3 cut(s) 128, 172, 187
BsmBI CGTCTC 2 cut(s) 172, 187
BsmFI GGGAC 1 cut(s) 572
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 2 cut(s) 78, 418
Bsp1286I GDGCHC 5 cut(s) 99, 120, 285, 351, 534
Bsp143I GATC 2 cut(s) 433, 546
BspACI CCGC 3 cut(s) 127, 298, 478
BspANI GGCC 2 cut(s) 78, 418
BspCNI CTCAG 2 cut(s) 132, 511
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 40, 417
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 2 cut(s) 441, 541
BsrI ACTGG 1 cut(s) 550
BssMI GATC 2 cut(s) 433, 546
BssNI GRCGYC 1 cut(s) 506
Bst4CI ACNGT 2 cut(s) 166, 353
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 506
BstAPI GCANNNNNTGC 1 cut(s) 590
BstBAI YACGTR 3 cut(s) 256, 294, 529
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 119, 498
BstFNI CGCG 1 cut(s) 300
BstKTI GATC 2 cut(s) 436, 549
BstMAI GTCTC 3 cut(s) 128, 172, 187
BstMBI GATC 2 cut(s) 433, 546
BstMWI GCNNNNNNNGC 4 cut(s) 29, 75, 529, 590
BstNSI RCATGY 2 cut(s) 220, 250
BstSCI CCNGG 2 cut(s) 113, 537
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 534
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 3 cut(s) 7, 44, 596
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 2 cut(s) 78, 418
BtgZI GCGATG 1 cut(s) 557
BtrI CACGTC 1 cut(s) 631
BtsI GCAGTG 2 cut(s) 456, 532
BtsIMutI CAGTG 4 cut(s) 358, 456, 506, 532
Cac8I GCNNGC 1 cut(s) 248
CaiI CAGNNNCTG 2 cut(s) 436, 590
Cfr13I GGNCC 1 cut(s) 416
CseI GACGC 1 cut(s) 576
Csp6I GTAC 5 cut(s) 295, 322, 340, 526, 617
CviAII CATG 3 cut(s) 217, 247, 562
CviJI RGCY 9 cut(s) 35, 78, 97, 118, 144, 283, 418, 497, 523
CviKI_1 RGCY 9 cut(s) 35, 78, 97, 118, 144, 283, 418, 497, 523
CviQI GTAC 5 cut(s) 295, 322, 340, 526, 617
DdeI CTNAG 2 cut(s) 119, 498
DpnI GATC 2 cut(s) 435, 548
DpnII GATC 2 cut(s) 433, 546
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 2 cut(s) 116, 493
Ecl136II GAGCTC 1 cut(s) 283
Eco24I GRGCYC 3 cut(s) 99, 120, 285
Eco32I GATATC 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 283
Eco72I CACGTG 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 578
EcoRV GATATC 1 cut(s) 411
EcoT38I GRGCYC 3 cut(s) 99, 120, 285
Esp3I CGTCTC 2 cut(s) 172, 187
FaeI CATG 3 cut(s) 220, 250, 565
FaiI YATR 3 cut(s) 218, 248, 563
FaqI GGGAC 1 cut(s) 572
FatI CATG 3 cut(s) 216, 246, 561
Fnu4HI GCNGC 3 cut(s) 21, 33, 585
FriOI GRGCYC 3 cut(s) 99, 120, 285
Fsp4HI GCNGC 3 cut(s) 21, 33, 585
GluI GCNGC 3 cut(s) 21, 33, 585
GsaI CCCAGC 1 cut(s) 144
HaeIII GGCC 2 cut(s) 78, 418
HapII CCGG 2 cut(s) 114, 539
HgaI GACGC 1 cut(s) 576
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 3 cut(s) 220, 250, 565
HpaII CCGG 2 cut(s) 114, 539
HphI GGTGA 4 cut(s) 139, 154, 217, 469
Hpy166II GTNNAC 4 cut(s) 324, 504, 532, 609
Hpy188I TCNGA 2 cut(s) 426, 438
Hpy188III TCNNGA 2 cut(s) 466, 634
Hpy8I GTNNAC 4 cut(s) 324, 504, 532, 609
Hpy99I CGWCG 5 cut(s) 86, 95, 305, 511, 635
HpyAV CCTTC 3 cut(s) 184, 268, 377
HpyCH4III ACNGT 2 cut(s) 166, 353
HpyCH4V TGCA 5 cut(s) 32, 220, 430, 532, 593
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 75, 529, 590
HpyF3I CTNAG 2 cut(s) 119, 498
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 3 cut(s) 220, 250, 565
Kzo9I GATC 2 cut(s) 433, 546
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 3 cut(s) 7, 44, 596
LweI GCATC 3 cut(s) 78, 270, 417
MaeIII GTNAC 3 cut(s) 223, 386, 626
MalI GATC 2 cut(s) 435, 548
MboI GATC 2 cut(s) 433, 546
MboII GAAGA 1 cut(s) 23
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 5 cut(s) 99, 120, 285, 351, 534
MluCI AATT 2 cut(s) 578, 622
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 7 cut(s) 35, 89, 142, 161, 212, 338, 349
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 2 cut(s) 114, 539
MspR9I CCNGG 2 cut(s) 115, 539
Mva1269I GAATGC 1 cut(s) 104
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 4 cut(s) 29, 75, 529, 590
NciI CCSGG 2 cut(s) 115, 539
NdeII GATC 2 cut(s) 433, 546
NlaIII CATG 3 cut(s) 220, 250, 565
NlaIV GGNNCC 2 cut(s) 40, 417
NmuCI GTSAC 3 cut(s) 223, 386, 626
NspI RCATGY 2 cut(s) 220, 250
PaeI GCATGC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 87, 96
PctI GAATGC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 22, 34, 586
PmaCI CACGTG 1 cut(s) 256
PmlI CACGTG 1 cut(s) 256
Ppu21I YACGTR 3 cut(s) 256, 294, 529
Psp124BI GAGCTC 1 cut(s) 285
PspCI CACGTG 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 40, 417
PspPI GGNCC 1 cut(s) 416
PstI CTGCAG 1 cut(s) 34
PstNI CAGNNNCTG 2 cut(s) 436, 590
PsuI RGATCY 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 5 cut(s) 296, 323, 341, 527, 618
RsaNI GTAC 5 cut(s) 295, 322, 340, 526, 617
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 1 cut(s) 285
SatI GCNGC 3 cut(s) 21, 33, 585
Sau3AI GATC 2 cut(s) 433, 546
Sau96I GGNCC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 115, 539
SduI GDGCHC 5 cut(s) 99, 120, 285, 351, 534
SfaNI GCATC 3 cut(s) 78, 270, 417
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 215
SphI GCATGC 1 cut(s) 250
Sse9I AATT 2 cut(s) 578, 622
SsiI CCGC 3 cut(s) 127, 298, 478
SstI GAGCTC 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 113, 537
TaaI ACNGT 2 cut(s) 166, 353
TaqI TCGA 1 cut(s) 633
TasI AATT 2 cut(s) 578, 622
TscAI CASTG 4 cut(s) 358, 456, 506, 539
TseFI GTSAC 3 cut(s) 223, 386, 626
TseI GCWGC 3 cut(s) 20, 32, 584
Tsp45I GTSAC 3 cut(s) 223, 386, 626
TspDTI ATGAA 2 cut(s) 97, 578
TspRI CASTG 4 cut(s) 358, 456, 506, 539
VneI GTGCAC 1 cut(s) 530
XapI RAATTY 1 cut(s) 578
XceI RCATGY 2 cut(s) 220, 250
ZraI GACGTC 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.