RchiOBHm_Chr2g0095911

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017146
Physical Location & Seq
Forward (+)
8891351 .. 8891998
648 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47088

Sequence Viewer

Length: 648 bp
ATGGGTGACGAAGAGAAAGCTCCTGTGCCTGCACCTGATTTTAGCATCCCTAAACCCGTCATCTACGGCGTCCTCGGCTTCCTCGGCGTCCTCGGCCTCGTAGTCCTGACCATCTTTCTCAGTCTCCGCCCCTCCAAGCCCAGCTTCACCATCCAAGACATCACCGTCTCCTCCTTCAATGTCTCCACCAGCCAACCCTACCGCCTCTCCACCAACATGCAAGTCACCATCTCCTCTCGGAACACCATGTCCCGAGTGGCGATCATCTACCGGGAGATGGAGCTCTACGCCACGTACCGCAACGAGCAGATCACGTTCCGGTACTCCCTCCCCTTGACGTACCAGGAGCACAATGAGTTCGTGGTGTGGTCACCCTACCTGGAGGGCCACGTTGCGGCTATTTCCCCGATTTCGGGGCCCGTTCTGATGCAGGATCTGAACTACGGGGCGGTGTTGGTGATCATCAAGATTGAAGGGCGGTTGAAGTTTAGAGTGGGTGGGTGGACGTCTGCGTACTACCGGTTGTACGGGCACTGCCCGGCGATGATCCAGTTGGGGGACATGGACACCAAGAAGGATTTCGCAGTGTCTGCAAAAGAGTTCAAGTTTCTGTTGGTGCAAAATTGTCATGTCGAGATTGCTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

215

Amino Acids

24.26

Weight (kDa)

8.46

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52470
fragaria_vesca FvH4_1g09370
malus_domestica MD00G1128800.v1.1
rosa_chinensis RchiOBHm_Chr2g0095911
rosa_laevigata RLG00000016606
rosa_multiflora Rmu_co8128420.1_g000001
rosa_roxburghii Rroxscaffold_2G00145970
rosa_rugosa Rorug02G0053900
rosa_samantha Rh2AG103000 Rh2BG104400 Rh2CG106900 Rh2DG104600
rosa_wichuraiana Rw2G007830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AatII GACGTC 1 cut(s) 509
AciI CCGC 6 cut(s) 127, 202, 298, 395, 449, 478
AclWI GGATC 2 cut(s) 441, 541
AcyI GRCGYC 3 cut(s) 69, 87, 506
AfaI GTAC 5 cut(s) 296, 323, 341, 515, 527
AfiI CCNNNNNNNGG 5 cut(s) 277, 394, 412, 413, 556
AgeI ACCGGT 1 cut(s) 519
AgsI TTSAA 4 cut(s) 178, 473, 484, 604
AjnI CCWGG 2 cut(s) 342, 378
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 563, 595
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 20, 144, 283
AluI AGCT 3 cut(s) 20, 144, 283
Alw21I GWGCWC 2 cut(s) 285, 351
Alw26I GTCTC 3 cut(s) 128, 172, 187
AlwI GGATC 2 cut(s) 441, 541
AlwNI CAGNNNCTG 2 cut(s) 436, 590
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 3 cut(s) 94, 385, 416
ApaI GGGCCC 1 cut(s) 420
AsiGI ACCGGT 1 cut(s) 519
Asp700I GAANNNNTTC 1 cut(s) 578
AspS9I GGNCC 3 cut(s) 385, 416, 417
AsuC2I CCSGG 2 cut(s) 272, 539
AsuHPI GGTGA 6 cut(s) 17, 139, 154, 217, 363, 469
AvaI CYCGRG 1 cut(s) 252
BaeGI GKGCMC 2 cut(s) 420, 534
BanII GRGCYC 2 cut(s) 285, 420
Bbv12I GWGCWC 2 cut(s) 285, 351
BccI CCATC 4 cut(s) 119, 158, 236, 271
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 2 cut(s) 344, 380
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 2 cut(s) 272, 539
BcoDI GTCTC 3 cut(s) 128, 172, 187
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme1390I CCNGG 4 cut(s) 272, 344, 380, 539
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 3 cut(s) 385, 416, 417
BmiI GGNNCC 2 cut(s) 417, 418
BmrFI CCNGG 4 cut(s) 272, 344, 380, 539
BmsI GCATC 2 cut(s) 54, 417
BpmI CTGGAG 1 cut(s) 401
BpuMI CCSGG 2 cut(s) 272, 539
BsaAI YACGTR 1 cut(s) 294
BsaHI GRCGYC 3 cut(s) 69, 87, 506
BsaJI CCNNGG 3 cut(s) 73, 82, 91
BsaWI WCCGGW 2 cut(s) 318, 519
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 5 cut(s) 277, 394, 412, 413, 556
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 1 cut(s) 550
BseBI CCWGG 2 cut(s) 344, 380
BseDI CCNNGG 3 cut(s) 73, 82, 91
BseGI GGATG 2 cut(s) 45, 150
BseLI CCNNNNNNNGG 5 cut(s) 277, 394, 412, 413, 556
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 550
BseRI GAGGAG 2 cut(s) 160, 223
BseSI GKGCMC 2 cut(s) 420, 534
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 15
BshFI GGCC 3 cut(s) 96, 387, 418
BshTI ACCGGT 1 cut(s) 519
BsiHKAI GWGCWC 2 cut(s) 285, 351
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 4 cut(s) 271, 319, 520, 539
BslFI GGGAC 2 cut(s) 235, 572
BslI CCNNNNNNNGG 5 cut(s) 277, 394, 412, 413, 556
BsmAI GTCTC 3 cut(s) 128, 172, 187
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 2 cut(s) 235, 572
BsnI GGCC 3 cut(s) 96, 387, 418
BsoBI CYCGRG 1 cut(s) 252
Bsp120I GGGCCC 1 cut(s) 416
Bsp1286I GDGCHC 4 cut(s) 285, 351, 420, 534
Bsp143I GATC 5 cut(s) 261, 309, 433, 459, 546
BspACI CCGC 6 cut(s) 127, 202, 298, 395, 449, 478
BspANI GGCC 3 cut(s) 96, 387, 418
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 417, 418
BspPI GGATC 2 cut(s) 441, 541
BsrFI RCCGGY 1 cut(s) 519
BsrI ACTGG 1 cut(s) 550
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 3 cut(s) 73, 82, 91
BssMI GATC 5 cut(s) 261, 309, 433, 459, 546
BssNI GRCGYC 3 cut(s) 69, 87, 506
Bst2UI CCWGG 2 cut(s) 344, 380
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 3 cut(s) 69, 87, 506
BstAPI GCANNNNNTGC 1 cut(s) 590
BstBAI YACGTR 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 119
BstEII GGTNACC 1 cut(s) 369
BstF5I GGATG 2 cut(s) 45, 150
BstKTI GATC 5 cut(s) 264, 312, 436, 462, 549
BstMAI GTCTC 3 cut(s) 128, 172, 187
BstMBI GATC 5 cut(s) 261, 309, 433, 459, 546
BstMWI GCNNNNNNNGC 4 cut(s) 75, 84, 93, 590
BstNI CCWGG 2 cut(s) 344, 380
BstNSI RCATGY 1 cut(s) 220
BstPI GGTNACC 1 cut(s) 369
BstSCI CCNGG 4 cut(s) 270, 342, 378, 537
BstSLI GKGCMC 2 cut(s) 420, 534
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 3 cut(s) 96, 387, 418
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 2 cut(s) 45, 150
BtsI GCAGTG 2 cut(s) 532, 591
BtsIMutI CAGTG 2 cut(s) 532, 591
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 2 cut(s) 436, 590
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 3 cut(s) 385, 416, 417
CseI GACGC 2 cut(s) 58, 76
Csp6I GTAC 5 cut(s) 295, 322, 340, 514, 526
CspAI ACCGGT 1 cut(s) 519
CviAII CATG 4 cut(s) 217, 247, 562, 629
CviQI GTAC 5 cut(s) 295, 322, 340, 514, 526
DdeI CTNAG 1 cut(s) 119
DpnI GATC 5 cut(s) 263, 311, 435, 461, 548
DpnII GATC 5 cut(s) 261, 309, 433, 459, 546
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 283
Eco24I GRGCYC 2 cut(s) 285, 420
Eco53kI GAGCTC 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 342, 378
EcoT38I GRGCYC 2 cut(s) 285, 420
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 4 cut(s) 220, 250, 565, 632
FaiI YATR 4 cut(s) 218, 248, 563, 630
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 2 cut(s) 235, 572
FatI CATG 4 cut(s) 216, 246, 561, 628
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 2 cut(s) 32, 137
FriOI GRGCYC 2 cut(s) 285, 420
Fsp4HI GCNGC 1 cut(s) 396
GluI GCNGC 1 cut(s) 396
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 3 cut(s) 96, 387, 418
HapII CCGG 4 cut(s) 271, 319, 520, 539
HgaI GACGC 2 cut(s) 58, 76
Hin1I GRCGYC 3 cut(s) 69, 87, 506
Hin1II CATG 4 cut(s) 220, 250, 565, 632
HpaII CCGG 4 cut(s) 271, 319, 520, 539
HphI GGTGA 6 cut(s) 17, 139, 154, 217, 363, 469
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 3 cut(s) 240, 426, 438
Hpy188III TCNNGA 4 cut(s) 106, 252, 466, 634
Hpy8I GTNNAC 1 cut(s) 504
HpyAV CCTTC 3 cut(s) 184, 467, 568
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 5 cut(s) 293, 314, 338, 390, 506
HpyCH4V TGCA 5 cut(s) 32, 220, 430, 593, 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 84, 93, 590
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 5 cut(s) 293, 314, 338, 390, 506
Hsp92I GRCGYC 3 cut(s) 69, 87, 506
Hsp92II CATG 4 cut(s) 220, 250, 565, 632
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 5 cut(s) 261, 309, 433, 459, 546
LmnI GCTCC 3 cut(s) 25, 280, 346
LweI GCATC 2 cut(s) 54, 417
MaeII ACGT 5 cut(s) 293, 314, 338, 390, 506
MaeIII GTNAC 3 cut(s) 5, 223, 369
MalI GATC 5 cut(s) 263, 311, 435, 461, 548
MboI GATC 5 cut(s) 261, 309, 433, 459, 546
MboII GAAGA 1 cut(s) 23
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 4 cut(s) 285, 351, 420, 534
MluCI AATT 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 578
MslI CAYNNNNRTG 1 cut(s) 215
MspI CCGG 4 cut(s) 271, 319, 520, 539
MspR9I CCNGG 4 cut(s) 272, 344, 380, 539
MvaI CCWGG 2 cut(s) 344, 380
MwoI GCNNNNNNNGC 4 cut(s) 75, 84, 93, 590
NciI CCSGG 2 cut(s) 272, 539
NdeII GATC 5 cut(s) 261, 309, 433, 459, 546
NlaIII CATG 4 cut(s) 220, 250, 565, 632
NlaIV GGNNCC 2 cut(s) 417, 418
NmeAIII GCCGAG 3 cut(s) 54, 63, 72
NmuCI GTSAC 3 cut(s) 5, 223, 369
NspI RCATGY 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 578
PinAI ACCGGT 1 cut(s) 519
PkrI GCNGC 1 cut(s) 397
Ppu21I YACGTR 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 342, 378
PspEI GGTNACC 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 2 cut(s) 342, 378
PspN4I GGNNCC 2 cut(s) 417, 418
PspOMI GGGCCC 1 cut(s) 416
PspPI GGNCC 3 cut(s) 385, 416, 417
PstNI CAGNNNCTG 2 cut(s) 436, 590
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 5 cut(s) 296, 323, 341, 515, 527
RsaNI GTAC 5 cut(s) 295, 322, 340, 514, 526
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 1 cut(s) 285
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 5 cut(s) 261, 309, 433, 459, 546
Sau96I GGNCC 3 cut(s) 385, 416, 417
ScrFI CCNGG 4 cut(s) 272, 344, 380, 539
SduI GDGCHC 4 cut(s) 285, 351, 420, 534
SfaNI GCATC 2 cut(s) 54, 417
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 1 cut(s) 622
SsiI CCGC 6 cut(s) 127, 202, 298, 395, 449, 478
SstI GAGCTC 1 cut(s) 285
StyD4I CCNGG 4 cut(s) 270, 342, 378, 537
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 5 cut(s) 296, 317, 341, 393, 509
TaqI TCGA 1 cut(s) 633
TasI AATT 1 cut(s) 622
TauI GCSGC 1 cut(s) 398
TscAI CASTG 2 cut(s) 539, 591
TseFI GTSAC 3 cut(s) 5, 223, 369
Tsp45I GTSAC 3 cut(s) 5, 223, 369
TspRI CASTG 2 cut(s) 539, 591
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 578
ZraI GACGTC 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.