AT3G52560

ubiquitin-conjugating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013917
Physical Location & Seq
Reverse (-)
19494369 .. 19496147
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52560.4

Sequence Viewer

Length: 441 bp
ATGACTCTTGGCTCAGGAGGATCTAGCGTTGTTGTTCCGAGGAATTTTCGGTTGTTGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCGGAGAAACCTCCAACTGTCCGATTCCATTCACGTGTCAACATGGCTTGTGTCAACCACGAAACAGGAGTGGTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGAGTACACAATGGAGGATATACTGGTACAGTTGAAGAAGGAAATGTCTACGTCGCATAACCGTAAGCTTGTTCAACCTCCGGAAGGTACTTGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04624 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

146

Amino Acids

16.53

Weight (kDa)

6.2

Isoelectric Point (pI)

29.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 71 - 152 3.6e-09 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013917)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52560 AT3G52560 AT3G52560 AT3G52560
fragaria_vesca FvH4_6g19850
malus_domestica MD12G1034000.v1.1 MD14G1035400.v1.1
prunus_persica Prupe.7G098800_v2.0.a1 Prupe.7G098800_v2.0.a1
pyrus_communis pycom14g03110
rosa_chinensis RchiOBHm_Chr3g0475251
rosa_laevigata RLG00000023856
rosa_multiflora Rmu_co8404831.1_g000001 Rmu_sc0003093.1_g000044
rosa_roxburghii Rroxscaffold_6G00406430
rosa_rugosa Rorug03G0147500
rosa_wichuraiana Rw3G017950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 389
AccIII TCCGGA 1 cut(s) 421
AclWI GGATC 3 cut(s) 28, 299, 312
AcsI RAATTY 2 cut(s) 43, 314
AcvI CACGTG 1 cut(s) 263
AfaI GTAC 3 cut(s) 347, 369, 430
AfiI CCNNNNNNNGG 1 cut(s) 425
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 4 cut(s) 68, 205, 376, 416
AluBI AGCT 4 cut(s) 64, 105, 208, 409
AluI AGCT 4 cut(s) 64, 105, 208, 409
AlwI GGATC 3 cut(s) 28, 299, 312
Aor13HI TCCGGA 1 cut(s) 421
ApoI RAATTY 2 cut(s) 43, 314
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 164
BamHI GGATCC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 152
BbrPI CACGTG 1 cut(s) 263
BccI CCATC 3 cut(s) 86, 113, 164
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcnI CCSGG 1 cut(s) 230
BfaI CTAG 2 cut(s) 24, 439
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 154, 306
BmrFI CCNGG 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 421
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 3 cut(s) 154, 338, 369
BseAI TCCGGA 1 cut(s) 421
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 97, 121
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 3 cut(s) 154, 338, 369
BseRI GAGGAG 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 152
BsiSI CCGG 2 cut(s) 230, 422
BslI CCNNNNNNNGG 1 cut(s) 425
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 2 cut(s) 20, 304
BspCNI CTCAG 1 cut(s) 26
BspEI TCCGGA 1 cut(s) 421
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 154, 306
BspPI GGATC 3 cut(s) 28, 299, 312
BspT107I GGYRCC 1 cut(s) 152
BsrI ACTGG 3 cut(s) 154, 338, 369
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 2 cut(s) 20, 304
Bst4CI ACNGT 5 cut(s) 100, 178, 247, 372, 404
BstBAI YACGTR 1 cut(s) 263
BstDEI CTNAG 2 cut(s) 13, 309
BstENI CCTNNNNNAGG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 97, 121
BstKTI GATC 2 cut(s) 23, 307
BstMBI GATC 2 cut(s) 20, 304
BstSCI CCNGG 1 cut(s) 228
BstX2I RGATCY 2 cut(s) 20, 304
BstYI RGATCY 2 cut(s) 20, 304
BtsCI GGATG 2 cut(s) 97, 121
BtsIMutI CAGTG 1 cut(s) 174
CciI TCATGA 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 3 cut(s) 346, 368, 429
CviAII CATG 2 cut(s) 182, 271
CviJI RGCY 7 cut(s) 12, 64, 105, 208, 275, 322, 409
CviKI_1 RGCY 7 cut(s) 12, 64, 105, 208, 275, 322, 409
CviQI GTAC 3 cut(s) 346, 368, 429
DdeI CTNAG 2 cut(s) 13, 309
DpnI GATC 2 cut(s) 22, 306
DpnII GATC 2 cut(s) 20, 304
Eco47I GGWCC 1 cut(s) 164
Eco72I CACGTG 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 423
FaeI CATG 2 cut(s) 185, 274
FaiI YATR 7 cut(s) 108, 135, 137, 183, 272, 362, 399
FatI CATG 2 cut(s) 181, 270
FblI GTMKAC 1 cut(s) 389
FokI GGATG 2 cut(s) 104, 128
FspBI CTAG 2 cut(s) 24, 439
HapII CCGG 2 cut(s) 230, 422
Hin1II CATG 2 cut(s) 185, 274
HincII GTYRAC 2 cut(s) 268, 283
HindII GTYRAC 2 cut(s) 268, 283
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 3 cut(s) 4, 192, 252
HpaII CCGG 2 cut(s) 230, 422
Hpy166II GTNNAC 4 cut(s) 268, 283, 348, 390
Hpy188I TCNGA 2 cut(s) 39, 251
Hpy188III TCNNGA 3 cut(s) 15, 182, 422
Hpy8I GTNNAC 4 cut(s) 268, 283, 348, 390
Hpy99I CGWCG 1 cut(s) 397
HpyAV CCTTC 3 cut(s) 179, 373, 419
HpyCH4III ACNGT 5 cut(s) 100, 178, 247, 372, 404
HpyCH4IV ACGT 3 cut(s) 70, 262, 392
HpyCH4V TGCA 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 13, 309
HpySE526I ACGT 3 cut(s) 70, 262, 392
Hsp92II CATG 2 cut(s) 185, 274
Kpn2I TCCGGA 1 cut(s) 421
Kzo9I GATC 2 cut(s) 20, 304
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 6 cut(s) 135, 243, 279, 319, 350, 435
MaeI CTAG 2 cut(s) 24, 439
MaeII ACGT 3 cut(s) 70, 262, 392
MaeIII GTNAC 1 cut(s) 215
MalI GATC 2 cut(s) 22, 306
MboI GATC 2 cut(s) 20, 304
MboII GAAGA 1 cut(s) 388
MflI RGATCY 2 cut(s) 20, 304
MluCI AATT 2 cut(s) 43, 314
MmeI TCCRAC 2 cut(s) 36, 266
MnlI CCTC 7 cut(s) 11, 33, 52, 177, 249, 349, 429
MroI TCCGGA 1 cut(s) 421
MslI CAYNNNNRTG 2 cut(s) 134, 261
MspI CCGG 2 cut(s) 230, 422
MspR9I CCNGG 1 cut(s) 230
NciI CCSGG 1 cut(s) 230
NdeII GATC 2 cut(s) 20, 304
NlaIII CATG 2 cut(s) 185, 274
NlaIV GGNNCC 2 cut(s) 154, 306
NmuCI GTSAC 1 cut(s) 215
PagI TCATGA 1 cut(s) 181
PfeI GAWTC 2 cut(s) 192, 252
PmaCI CACGTG 1 cut(s) 263
PmlI CACGTG 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 263
PspCI CACGTG 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 154, 306
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 2 cut(s) 20, 304
RsaI GTAC 3 cut(s) 347, 369, 430
RsaNI GTAC 3 cut(s) 346, 368, 429
RseI CAYNNNNRTG 2 cut(s) 134, 261
Sau3AI GATC 2 cut(s) 20, 304
Sau96I GGNCC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 230
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 134, 261
Sse9I AATT 2 cut(s) 43, 314
SspMI CTAG 2 cut(s) 24, 439
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 5 cut(s) 100, 178, 247, 372, 404
TaiI ACGT 3 cut(s) 73, 265, 395
TaqII GACCGA 1 cut(s) 152
TasI AATT 2 cut(s) 43, 314
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 2 cut(s) 192, 252
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 170, 198
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 423
XapI RAATTY 2 cut(s) 43, 314
XmiI GTMKAC 1 cut(s) 389
XspI CTAG 2 cut(s) 24, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.