Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013917

Physical Location & Seq

Genomic Coordinates Forward (+)

13321028 .. 13323909

Gene Structure 2882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACGCTAGGCTCAGGAGGATCAGGTGTTGTGGTCCCGAGAAACTTCAGATTGCTGGAGGAACTTGAACGTGGAGAGAAAGGTATTGGAGATGGCACTGTGAGCTATGGGATGGACGACGGAGATGATATCTACATGCGTTCTTGGACTGGCACCATCATTGGCCCCCATAATACTGTTCATGAGGGTCGGATCTATCAATTGAAGCTGTTCTGTGATAAAGATTACCCGGAGAAGCCACCAACTGTTCGATTTCATTCACGGATTAACATGACTTGTGTCAACCATGAAACTGGAGTGGTGGATGCAAAGAAATTCGGGCTTCTTGCAAACTGGCAGAGAGAGTACACCATGGAGGATATTCTTACACAGCTGAAAAAGGAGATGGCAGCTGCACATAACCGGAAGTTGGTCCAGCCTCCGGAAGGTACCTACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04624 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

147

Amino Acids

16.52

Weight (kDa)

6.2

Isoelectric Point (pI)

20.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	44 - 132	1.3e-14	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52560 AT3G52560 AT3G52560 AT3G52560
fragaria_vesca	FvH4_6g19850
malus_domestica	MD12G1034000.v1.1 MD14G1035400.v1.1
prunus_persica	Prupe.7G098800_v2.0.a1 Prupe.7G098800_v2.0.a1
pyrus_communis	pycom14g03110
rosa_chinensis	RchiOBHm_Chr3g0475251
rosa_laevigata	RLG00000023856
rosa_multiflora	Rmu_co8404831.1_g000001 Rmu_sc0003093.1_g000044
rosa_roxburghii	Rroxscaffold_6G00406430
rosa_rugosa	Rorug03G0147500
rosa_wichuraiana	Rw3G017950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	428
AccB1I	GGYRCC	2 cut(s)	152, 428
AccIII	TCCGGA	1 cut(s)	421
AclWI	GGATC	2 cut(s)	28, 200
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	31
AfaI	GTAC	2 cut(s)	347, 430
AfiI	CCNNNNNNNGG	3 cut(s)	409, 421, 425
AgsI	TTSAA	2 cut(s)	68, 205
AluBI	AGCT	4 cut(s)	105, 208, 373, 392
AluI	AGCT	4 cut(s)	105, 208, 373, 392
AlwI	GGATC	2 cut(s)	28, 200
Ama87I	CYCGRG	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	389, 392
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	209
Asp718I	GGTACC	1 cut(s)	428
AspS9I	GGNCC	3 cut(s)	34, 164, 412
AsuC2I	CCSGG	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	34, 412
BanI	GGYRCC	2 cut(s)	152, 428
BbvI	GCAGC	2 cut(s)	379, 401
BccI	CCATC	4 cut(s)	86, 106, 164, 379
BcnI	CCSGG	1 cut(s)	230
BfaI	CTAG	2 cut(s)	8, 439
BisI	GCNGC	2 cut(s)	390, 393
BlsI	GCNGC	2 cut(s)	391, 394
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	2 cut(s)	34, 412
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	3 cut(s)	34, 164, 412
BmiI	GGNNCC	4 cut(s)	36, 154, 166, 430
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	295
BoxI	GACNNNNGTC	1 cut(s)	278
BpmI	CTGGAG	2 cut(s)	77, 315
Bpu10I	CCTNAGC	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	2 cut(s)	402, 421
Bsc4I	CCNNNNNNNGG	3 cut(s)	409, 421, 425
Bse1I	ACTGG	3 cut(s)	154, 298, 338
BseAI	TCCGGA	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	117, 310
BseLI	CCNNNNNNNGG	3 cut(s)	409, 421, 425
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	3 cut(s)	154, 298, 338
BseXI	GCAGC	2 cut(s)	379, 401
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	2 cut(s)	152, 428
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	3 cut(s)	230, 403, 422
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	3 cut(s)	409, 421, 425
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	20, 192
Bsp19I	CCATGG	1 cut(s)	351
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	26
BspEI	TCCGGA	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	4 cut(s)	36, 154, 166, 430
BspPI	GGATC	2 cut(s)	28, 200
BspT107I	GGYRCC	2 cut(s)	152, 428
BsrI	ACTGG	3 cut(s)	154, 298, 338
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	2 cut(s)	20, 192
BssT1I	CCWWGG	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	100, 178, 247
BstDEI	CTNAG	1 cut(s)	13
BstDSI	CCRYGG	1 cut(s)	351
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	117, 310
BstKTI	GATC	2 cut(s)	23, 195
BstMBI	GATC	2 cut(s)	20, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	139
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	379, 401
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	117, 310
BtsIMutI	CAGTG	1 cut(s)	96
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	3 cut(s)	34, 164, 412
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	346, 429
CviAII	CATG	5 cut(s)	136, 182, 271, 287, 352
CviJI	RGCY	9 cut(s)	12, 105, 165, 208, 238, 322, 373, 392, 418
CviKI_1	RGCY	9 cut(s)	12, 105, 165, 208, 238, 322, 373, 392, 418
CviQI	GTAC	2 cut(s)	346, 429
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	2 cut(s)	22, 194
DpnII	GATC	2 cut(s)	20, 192
Eco130I	CCWWGG	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	34, 412
Eco57I	CTGAAG	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	37
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	5 cut(s)	139, 185, 274, 290, 355
FaiI	YATR	8 cut(s)	108, 137, 171, 183, 272, 288, 353, 399
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	5 cut(s)	135, 181, 270, 286, 351
Fnu4HI	GCNGC	2 cut(s)	390, 393
FokI	GGATG	2 cut(s)	124, 317
Fsp4HI	GCNGC	2 cut(s)	390, 393
FspBI	CTAG	2 cut(s)	8, 439
GluI	GCNGC	2 cut(s)	390, 393
GsuI	CTGGAG	2 cut(s)	77, 315
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	3 cut(s)	230, 403, 422
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	5 cut(s)	139, 185, 274, 290, 355
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HpaII	CCGG	3 cut(s)	230, 403, 422
Hpy166II	GTNNAC	2 cut(s)	283, 348
Hpy188I	TCNGA	2 cut(s)	50, 192
Hpy188III	TCNNGA	4 cut(s)	15, 37, 182, 422
Hpy8I	GTNNAC	2 cut(s)	283, 348
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	3 cut(s)	100, 178, 247
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	308, 329, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	5 cut(s)	139, 185, 274, 290, 355
Kpn2I	TCCGGA	1 cut(s)	421
KpnI	GGTACC	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	20, 192
LpnPI	CCDG	9 cut(s)	9, 41, 135, 243, 279, 319, 416, 428, 435
Lsp1109I	GCAGC	2 cut(s)	379, 401
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	2 cut(s)	8, 439
MaeII	ACGT	1 cut(s)	70
MalI	GATC	2 cut(s)	22, 194
MboI	GATC	2 cut(s)	20, 192
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	2 cut(s)	200, 314
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	5 cut(s)	11, 52, 178, 349, 429
MroI	TCCGGA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	2 cut(s)	373, 392
MspI	CCGG	3 cut(s)	230, 403, 422
MspR9I	CCNGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	2 cut(s)	20, 192
NlaIII	CATG	5 cut(s)	139, 185, 274, 290, 355
NlaIV	GGNNCC	4 cut(s)	36, 154, 166, 430
NspI	RCATGY	1 cut(s)	139
PagI	TCATGA	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	391, 394
PshAI	GACNNNNGTC	1 cut(s)	278
PspN4I	GGNNCC	4 cut(s)	36, 154, 166, 430
PspPI	GGNCC	3 cut(s)	34, 164, 412
PsuI	RGATCY	1 cut(s)	192
PvuII	CAGCTG	2 cut(s)	373, 392
RsaI	GTAC	2 cut(s)	347, 430
RsaNI	GTAC	2 cut(s)	346, 429
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	2 cut(s)	390, 393
Sau3AI	GATC	2 cut(s)	20, 192
Sau96I	GGNCC	3 cut(s)	34, 164, 412
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	9 cut(s)	28, 73, 85, 107, 210, 375, 394, 430, 434
SfaNI	GCATC	1 cut(s)	295
SinI	GGWCC	2 cut(s)	34, 412
Sse9I	AATT	2 cut(s)	200, 314
SspMI	CTAG	2 cut(s)	8, 439
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	3 cut(s)	100, 178, 247
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	250
TasI	AATT	2 cut(s)	200, 314
TatI	WGTACW	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	2 cut(s)	389, 392
TspDTI	ATGAA	3 cut(s)	170, 245, 303
TspGWI	ACGGA	2 cut(s)	135, 277
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	2 cut(s)	34, 412
XagI	CCTNNNNNAGG	1 cut(s)	423
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	2 cut(s)	8, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.